HEADER SUGAR BINDING PROTEIN 06-JUL-21 7P2J TITLE DIMETHYLATED FUSION PROTEIN OF RSL AND TRIMERIC COILED COIL (4DZN) IN TITLE 2 COMPLEX WITH CUCURBIT[7]URIL, H3 SHEET ASSEMBLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PUTATIVE FUCOSE-BINDING LECTIN PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA SOLANACEARUM; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS SOLANACEARUM; SOURCE 4 ORGANISM_TAXID: 305; SOURCE 5 GENE: E7Z57_08365, HXP36_18875, RSP795_21825, RSP822_19650, SOURCE 6 RUN39_V1_50103; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIOMATERIALS, COILED COIL, CRYSTAL ENGINEERING, IDP, MACROCYCLE, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.RAMBERG,S.ENGILBERGE,P.B.CROWLEY REVDAT 3 31-JAN-24 7P2J 1 REMARK REVDAT 2 03-NOV-21 7P2J 1 JRNL REVDAT 1 08-SEP-21 7P2J 0 JRNL AUTH K.O.RAMBERG,F.GUAGNINI,S.ENGILBERGE,M.A.WRONSKA,M.L.RENNIE, JRNL AUTH 2 J.PEREZ,P.B.CROWLEY JRNL TITL SEGREGATED PROTEIN-CUCURBIT[7]URIL CRYSTALLINE ARCHITECTURES JRNL TITL 2 VIA MODULATORY PEPTIDE TECTONS. JRNL REF CHEMISTRY V. 27 14619 2021 JRNL REFN ISSN 0947-6539 JRNL PMID 34432924 JRNL DOI 10.1002/CHEM.202103025 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 107.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0800 - 3.9600 1.00 2658 138 0.1607 0.1851 REMARK 3 2 3.9600 - 3.1400 1.00 2674 132 0.1786 0.2205 REMARK 3 3 3.1400 - 2.7500 1.00 2654 129 0.2142 0.3036 REMARK 3 4 2.7500 - 2.4900 1.00 2649 144 0.2257 0.2915 REMARK 3 5 2.4900 - 2.3200 1.00 2667 114 0.2214 0.2931 REMARK 3 6 2.3200 - 2.1800 1.00 2644 146 0.2478 0.2736 REMARK 3 7 2.1800 - 2.0700 1.00 2610 137 0.2843 0.3440 REMARK 3 8 2.0700 - 1.9800 1.00 2657 142 0.3187 0.3860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7P2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292116848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22317 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 107.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BT9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 8000 0.1 M TRIS-HCL PH 8.5 REMARK 280 0.2 M MGCL2 2 MM Q7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.80850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.90054 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.54433 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 25.80850 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 14.90054 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 107.54433 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 25.80850 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 14.90054 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 107.54433 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.80109 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 215.08867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.80109 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 215.08867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.80109 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 215.08867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 104 LIES ON A SPECIAL POSITION. REMARK 375 NA NA B 104 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 279 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 286 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 293 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 306 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 324 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 281 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 299 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 317 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -23 REMARK 465 SER B -23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -22 OG REMARK 470 GLU A -21 CG CD OE1 OE2 REMARK 470 ILE A -20 CG1 CG2 CD1 REMARK 470 LEU A -17 CG CD1 CD2 REMARK 470 MLY A -16 CG CD CE NZ CH1 CH2 REMARK 470 GLN A -15 CG CD OE1 NE2 REMARK 470 GLU A -14 CG CD OE1 OE2 REMARK 470 ILE A -13 CG1 CG2 CD1 REMARK 470 LEU A -10 CG CD1 CD2 REMARK 470 SER B -22 OG REMARK 470 GLU B -21 CG CD OE1 OE2 REMARK 470 ILE B -20 CG1 CG2 CD1 REMARK 470 LEU B -17 CG CD1 CD2 REMARK 470 MLY B -16 CG CD CE NZ CH1 CH2 REMARK 470 GLN B -15 CG CD OE1 NE2 REMARK 470 GLU B -14 CG CD OE1 OE2 REMARK 470 ILE B -13 CG1 CG2 CD1 REMARK 470 LEU B -10 CG CD1 CD2 REMARK 470 ASN B 90 CB CG OD1 ND2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU A -21 REMARK 475 ILE A -20 REMARK 475 ALA A -18 REMARK 475 MLY A -16 REMARK 475 GLN A -15 REMARK 475 GLU A -14 REMARK 475 ILE A -13 REMARK 475 ALA A -12 REMARK 475 ALA A -11 REMARK 475 SER B -22 REMARK 475 GLU B -21 REMARK 475 ILE B -20 REMARK 475 ALA B -19 REMARK 475 ALA B -18 REMARK 475 LEU B -17 REMARK 475 MLY B -16 REMARK 475 GLN B -15 REMARK 475 GLU B -14 REMARK 475 ILE B -13 REMARK 475 ALA B -12 REMARK 475 ALA B -11 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A -22 N CA CB REMARK 480 ALA A -19 CA C O CB REMARK 480 LEU A -17 CA CB REMARK 480 LEU A -10 CB REMARK 480 MLY A -9 CB CG CD CE NZ CH1 CH2 REMARK 480 MLY A -8 CB CG CD CE NZ CH1 CH2 REMARK 480 GLU A -7 CB CG CD OE1 OE2 REMARK 480 ILE A -6 CB CG1 CG2 CD1 REMARK 480 ALA A -5 CB REMARK 480 LEU A -3 CG CD1 CD2 REMARK 480 MLY A -2 CG CD CE CH1 CH2 REMARK 480 ALA A -1 C O CB REMARK 480 LEU B -10 CB REMARK 480 MLY B -9 CB CG CD CE NZ CH1 CH2 REMARK 480 MLY B -8 CB CG CD CE NZ CH1 CH2 REMARK 480 GLU B -7 CB CG CD OE1 OE2 REMARK 480 ILE B -6 CB CG1 CG2 CD1 REMARK 480 ALA B -5 CB REMARK 480 ALA B -4 CB REMARK 480 LEU B -3 CB CG CD1 CD2 REMARK 480 MLY B -2 CD CE NZ CH1 CH2 REMARK 480 ALA B -1 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 79 49.61 -143.13 REMARK 500 ASN B 42 93.55 -161.44 REMARK 500 ASN B 79 55.99 -152.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 321 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 322 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A 323 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A 324 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH A 325 DISTANCE = 8.62 ANGSTROMS REMARK 525 HOH B 315 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 316 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B 317 DISTANCE = 7.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 QQ7 A 101 O07 REMARK 620 2 QQ7 A 101 O10 78.4 REMARK 620 3 QQ7 A 101 O07 0.0 78.4 REMARK 620 4 QQ7 A 101 O10 78.4 0.0 78.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 QQ7 B 101 O06 REMARK 620 2 QQ7 B 101 O 78.6 REMARK 620 3 QQ7 B 101 O06 0.0 78.6 REMARK 620 4 QQ7 B 101 O 78.6 0.0 78.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6F37 RELATED DB: PDB REMARK 900 RSL FUSION PROTEIN REMARK 900 RELATED ID: 6S99 RELATED DB: PDB REMARK 900 RSL FUSION PROTEIN IN COMPLEX WITH Q7: SHEET ASSEMBLY REMARK 900 RELATED ID: 7P2H RELATED DB: PDB REMARK 900 RSL FUSION PROTEIN IN COMPLEX WITH Q7: SHEET ASSEMBLY REMARK 900 RELATED ID: 7P2I RELATED DB: PDB REMARK 900 RSL FUSION PROTEIN IN COMPLEX WITH Q7: CAGE ASSEMBLY DBREF1 7P2J A 2 90 UNP A0A0S4TLR1_RALSL DBREF2 7P2J A A0A0S4TLR1 3 91 DBREF1 7P2J B 2 90 UNP A0A0S4TLR1_RALSL DBREF2 7P2J B A0A0S4TLR1 3 91 SEQADV 7P2J SER A -23 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J SER A -22 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J GLU A -21 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ILE A -20 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA A -19 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA A -18 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J LEU A -17 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J MLY A -16 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J GLN A -15 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J GLU A -14 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ILE A -13 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA A -12 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA A -11 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J LEU A -10 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J MLY A -9 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J MLY A -8 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J GLU A -7 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ILE A -6 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA A -5 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA A -4 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J LEU A -3 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J MLY A -2 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA A -1 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J GLY A 0 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA A 1 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J SER B -23 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J SER B -22 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J GLU B -21 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ILE B -20 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA B -19 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA B -18 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J LEU B -17 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J MLY B -16 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J GLN B -15 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J GLU B -14 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ILE B -13 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA B -12 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA B -11 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J LEU B -10 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J MLY B -9 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J MLY B -8 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J GLU B -7 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ILE B -6 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA B -5 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA B -4 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J LEU B -3 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J MLY B -2 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA B -1 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J GLY B 0 UNP A0A0S4TLR EXPRESSION TAG SEQADV 7P2J ALA B 1 UNP A0A0S4TLR EXPRESSION TAG SEQRES 1 A 114 SER SER GLU ILE ALA ALA LEU MLY GLN GLU ILE ALA ALA SEQRES 2 A 114 LEU MLY MLY GLU ILE ALA ALA LEU MLY ALA GLY ALA SER SEQRES 3 A 114 VAL GLN THR ALA ALA THR SER TRP GLY THR VAL PRO SER SEQRES 4 A 114 ILE ARG VAL TYR THR ALA ASN ASN GLY MLY ILE THR GLU SEQRES 5 A 114 ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY ALA PHE SEQRES 6 A 114 ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER TRP LEU SEQRES 7 A 114 VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SER THR SEQRES 8 A 114 GLY THR THR THR THR GLU TRP CYS TRP ASP GLY ASN GLY SEQRES 9 A 114 TRP THR MLY GLY ALA TYR THR ALA THR ASN SEQRES 1 B 114 SER SER GLU ILE ALA ALA LEU MLY GLN GLU ILE ALA ALA SEQRES 2 B 114 LEU MLY MLY GLU ILE ALA ALA LEU MLY ALA GLY ALA SER SEQRES 3 B 114 VAL GLN THR ALA ALA THR SER TRP GLY THR VAL PRO SER SEQRES 4 B 114 ILE ARG VAL TYR THR ALA ASN ASN GLY MLY ILE THR GLU SEQRES 5 B 114 ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY ALA PHE SEQRES 6 B 114 ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER TRP LEU SEQRES 7 B 114 VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SER THR SEQRES 8 B 114 GLY THR THR THR THR GLU TRP CYS TRP ASP GLY ASN GLY SEQRES 9 B 114 TRP THR MLY GLY ALA TYR THR ALA THR ASN MODRES 7P2J MLY A 25 LYS MODIFIED RESIDUE MODRES 7P2J MLY A 34 LYS MODIFIED RESIDUE MODRES 7P2J MLY A 83 LYS MODIFIED RESIDUE MODRES 7P2J MLY B 25 LYS MODIFIED RESIDUE MODRES 7P2J MLY B 34 LYS MODIFIED RESIDUE MODRES 7P2J MLY B 83 LYS MODIFIED RESIDUE HET MLY A -16 5 HET MLY A -9 11 HET MLY A -8 11 HET MLY A -2 11 HET MLY A 25 11 HET MLY A 34 11 HET MLY A 83 11 HET MLY B -16 5 HET MLY B -9 11 HET MLY B -8 11 HET MLY B -2 11 HET MLY B 25 11 HET MLY B 34 11 HET MLY B 83 11 HET QQ7 A 101 84 HET BMA A 102 12 HET BMA A 103 12 HET NA A 104 1 HET QQ7 B 101 84 HET BMA B 102 12 HET BMA B 103 12 HET NA B 104 1 HETNAM MLY N-DIMETHYL-LYSINE HETNAM QQ7 CUCURBIT[7]URIL HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM NA SODIUM ION HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 1 MLY 14(C8 H18 N2 O2) FORMUL 3 QQ7 2(C42 H42 N28 O14) FORMUL 4 BMA 4(C6 H12 O6) FORMUL 6 NA 2(NA 1+) FORMUL 11 HOH *242(H2 O) HELIX 1 AA1 SER A -22 GLY A 0 1 23 HELIX 2 AA2 GLU B -21 GLY B 0 1 22 SHEET 1 AA1 4 GLN A 4 TRP A 10 0 SHEET 2 AA1 4 SER A 15 ASN A 22 -1 O ALA A 21 N GLN A 4 SHEET 3 AA1 4 MLY A 25 TRP A 31 -1 O MLY A 25 N ASN A 22 SHEET 4 AA1 4 TRP A 36 PRO A 44 -1 O TYR A 37 N CYS A 30 SHEET 1 AA2 4 ASN A 47 VAL A 55 0 SHEET 2 AA2 4 ALA A 58 THR A 67 -1 O TYR A 64 N SER A 49 SHEET 3 AA2 4 THR A 70 TRP A 76 -1 O THR A 72 N ALA A 65 SHEET 4 AA2 4 TRP A 81 MLY A 83 -1 O THR A 82 N CYS A 75 SHEET 1 AA3 4 GLN B 4 TRP B 10 0 SHEET 2 AA3 4 SER B 15 ASN B 22 -1 O ALA B 21 N GLN B 4 SHEET 3 AA3 4 MLY B 25 TRP B 31 -1 O MLY B 25 N ASN B 22 SHEET 4 AA3 4 TRP B 36 PRO B 44 -1 O TYR B 37 N CYS B 30 SHEET 1 AA4 4 ASN B 47 VAL B 55 0 SHEET 2 AA4 4 ALA B 58 THR B 67 -1 O ARG B 62 N THR B 51 SHEET 3 AA4 4 THR B 70 TRP B 76 -1 O THR B 70 N THR B 67 SHEET 4 AA4 4 TRP B 81 MLY B 83 -1 O THR B 82 N CYS B 75 LINK C LEU A -17 N MLY A -16 1555 1555 1.33 LINK C MLY A -16 N GLN A -15 1555 1555 1.33 LINK C LEU A -10 N MLY A -9 1555 1555 1.33 LINK C MLY A -9 N MLY A -8 1555 1555 1.33 LINK C MLY A -8 N GLU A -7 1555 1555 1.33 LINK C LEU A -3 N MLY A -2 1555 1555 1.33 LINK C MLY A -2 N ALA A -1 1555 1555 1.33 LINK C GLY A 24 N MLY A 25 1555 1555 1.33 LINK C MLY A 25 N ILE A 26 1555 1555 1.33 LINK C GLY A 33 N MLY A 34 1555 1555 1.33 LINK C MLY A 34 N GLY A 35 1555 1555 1.33 LINK C THR A 82 N MLY A 83 1555 1555 1.33 LINK C MLY A 83 N GLY A 84 1555 1555 1.33 LINK C LEU B -17 N MLY B -16 1555 1555 1.33 LINK C MLY B -16 N GLN B -15 1555 1555 1.33 LINK C LEU B -10 N MLY B -9 1555 1555 1.33 LINK C MLY B -9 N MLY B -8 1555 1555 1.33 LINK C MLY B -8 N GLU B -7 1555 1555 1.33 LINK C LEU B -3 N MLY B -2 1555 1555 1.33 LINK C MLY B -2 N ALA B -1 1555 1555 1.33 LINK C GLY B 24 N MLY B 25 1555 1555 1.33 LINK C MLY B 25 N ILE B 26 1555 1555 1.33 LINK C GLY B 33 N MLY B 34 1555 1555 1.33 LINK C MLY B 34 N GLY B 35 1555 1555 1.33 LINK C THR B 82 N MLY B 83 1555 1555 1.33 LINK C MLY B 83 N GLY B 84 1555 1555 1.33 LINK O07 QQ7 A 101 NA NA A 104 1555 1555 2.53 LINK O10 QQ7 A 101 NA NA A 104 1555 1555 2.70 LINK O07 QQ7 A 101 NA NA A 104 1555 2655 2.53 LINK O10 QQ7 A 101 NA NA A 104 1555 2655 2.70 LINK O06 QQ7 B 101 NA NA B 104 1555 1555 2.73 LINK O QQ7 B 101 NA NA B 104 1555 1555 2.51 LINK O06 QQ7 B 101 NA NA B 104 1555 2445 2.73 LINK O QQ7 B 101 NA NA B 104 1555 2445 2.51 CISPEP 1 VAL A 13 PRO A 14 0 -7.20 CISPEP 2 VAL B 13 PRO B 14 0 -3.84 CRYST1 51.617 51.617 322.633 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019373 0.011185 0.000000 0.00000 SCALE2 0.000000 0.022371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003099 0.00000