HEADER CHAPERONE 09-JUL-21 7P42 TITLE CRYSTAL STRUCTURE OF IPGC IN COMPLEX WITH A FOLLOW-UP COMPOUND BASED TITLE 2 ON J2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN IPGC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: IPGC, IPPI, CP0129; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS IPGC, CHAPERONE, SHIGELLA, FOLLOW-UP COMPOUND EXPDTA X-RAY DIFFRACTION AUTHOR M.GARDONYI,A.HEINE,G.KLEBE REVDAT 2 31-JAN-24 7P42 1 REMARK REVDAT 1 20-JUL-22 7P42 0 JRNL AUTH M.GARDONYI,A.HEINE,G.KLEBE JRNL TITL CRYSTAL STRUCTURE OF IPGC IN COMPLEX WITH A FOLLOW-UP JRNL TITL 2 COMPOUND BASED ON J2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 49972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 1.5300 - 1.5000 0.93 2434 129 0.2853 0.3048 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.144 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.046 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2390 REMARK 3 ANGLE : 0.780 3259 REMARK 3 CHIRALITY : 0.074 352 REMARK 3 PLANARITY : 0.005 444 REMARK 3 DIHEDRAL : 19.924 861 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 24:32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.212 13.319 -2.142 REMARK 3 T TENSOR REMARK 3 T11: 0.2327 T22: 0.3931 REMARK 3 T33: 0.3995 T12: -0.0431 REMARK 3 T13: 0.0236 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 3.1867 L22: 5.4434 REMARK 3 L33: 9.2252 L12: 0.6732 REMARK 3 L13: 0.0914 L23: 1.7214 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: 0.1525 S13: -0.8428 REMARK 3 S21: -0.0238 S22: -0.2689 S23: 0.2006 REMARK 3 S31: 0.3005 S32: -0.9465 S33: 0.1523 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 33:39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.830 22.604 -6.030 REMARK 3 T TENSOR REMARK 3 T11: 0.3407 T22: 0.3288 REMARK 3 T33: 0.2674 T12: 0.0590 REMARK 3 T13: -0.0145 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 5.3410 L22: 5.7185 REMARK 3 L33: 3.0690 L12: 0.8292 REMARK 3 L13: 3.2154 L23: -1.9678 REMARK 3 S TENSOR REMARK 3 S11: -0.0529 S12: 0.0678 S13: 0.0132 REMARK 3 S21: -0.3345 S22: 0.1956 S23: 0.6387 REMARK 3 S31: -0.6029 S32: -0.7809 S33: -0.0549 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 40:53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.208 23.364 -8.312 REMARK 3 T TENSOR REMARK 3 T11: 0.2594 T22: 0.2001 REMARK 3 T33: 0.1588 T12: -0.0525 REMARK 3 T13: 0.0096 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 6.1430 L22: 3.4035 REMARK 3 L33: 8.9366 L12: 1.9449 REMARK 3 L13: 6.5979 L23: 0.9655 REMARK 3 S TENSOR REMARK 3 S11: -0.3258 S12: 0.2742 S13: 0.4908 REMARK 3 S21: -0.3144 S22: 0.0624 S23: 0.1055 REMARK 3 S31: -0.7550 S32: 0.1473 S33: 0.2236 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 54:78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.052 13.640 -7.076 REMARK 3 T TENSOR REMARK 3 T11: 0.1715 T22: 0.1214 REMARK 3 T33: 0.1134 T12: -0.0274 REMARK 3 T13: -0.0007 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.2523 L22: 1.5486 REMARK 3 L33: 3.2570 L12: -0.2440 REMARK 3 L13: -0.9767 L23: 0.4973 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: -0.0030 S13: -0.0180 REMARK 3 S21: 0.0162 S22: -0.0364 S23: 0.0229 REMARK 3 S31: -0.0024 S32: 0.0215 S33: 0.0186 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 79:85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.420 12.035 -9.141 REMARK 3 T TENSOR REMARK 3 T11: 0.1830 T22: 0.2779 REMARK 3 T33: 0.1705 T12: -0.0728 REMARK 3 T13: -0.0292 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 6.3027 L22: 7.7256 REMARK 3 L33: 3.7225 L12: -1.0479 REMARK 3 L13: -3.7842 L23: 1.1794 REMARK 3 S TENSOR REMARK 3 S11: 0.1003 S12: -0.9849 S13: 0.4828 REMARK 3 S21: 0.2772 S22: 0.0578 S23: -0.2993 REMARK 3 S31: -0.4659 S32: 0.6997 S33: -0.1045 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 86:89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.700 4.889 -11.557 REMARK 3 T TENSOR REMARK 3 T11: 0.2020 T22: 0.2032 REMARK 3 T33: 0.2552 T12: -0.0603 REMARK 3 T13: -0.0314 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 5.6409 L22: 4.0075 REMARK 3 L33: 7.8117 L12: 2.5578 REMARK 3 L13: -4.5874 L23: -2.6399 REMARK 3 S TENSOR REMARK 3 S11: -0.1807 S12: -0.2581 S13: -0.7120 REMARK 3 S21: -0.0596 S22: 0.0411 S23: -0.8086 REMARK 3 S31: -0.2815 S32: 0.5110 S33: 0.1729 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 90:121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.777 5.487 -19.409 REMARK 3 T TENSOR REMARK 3 T11: 0.2159 T22: 0.1281 REMARK 3 T33: 0.1643 T12: -0.0283 REMARK 3 T13: 0.0120 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 6.4977 L22: 0.8431 REMARK 3 L33: 1.1080 L12: 0.8004 REMARK 3 L13: -0.4955 L23: -0.3288 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: -0.0115 S13: -0.1742 REMARK 3 S21: -0.0507 S22: 0.0017 S23: -0.0403 REMARK 3 S31: -0.0096 S32: 0.0057 S33: 0.0364 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 122:134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.958 3.427 -28.849 REMARK 3 T TENSOR REMARK 3 T11: 0.2397 T22: 0.1741 REMARK 3 T33: 0.1793 T12: -0.0534 REMARK 3 T13: 0.0507 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 7.8775 L22: 4.0142 REMARK 3 L33: 8.0660 L12: -3.1908 REMARK 3 L13: 6.9245 L23: -2.5580 REMARK 3 S TENSOR REMARK 3 S11: 0.1908 S12: 0.3487 S13: -0.3375 REMARK 3 S21: -0.3887 S22: -0.0332 S23: 0.0008 REMARK 3 S31: 0.6188 S32: 0.0876 S33: -0.1292 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 135:151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.587 10.642 -30.908 REMARK 3 T TENSOR REMARK 3 T11: 0.2206 T22: 0.2614 REMARK 3 T33: 0.2060 T12: -0.0808 REMARK 3 T13: 0.0486 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 8.4072 L22: 7.4271 REMARK 3 L33: 2.2842 L12: -6.6017 REMARK 3 L13: 2.9710 L23: -1.8646 REMARK 3 S TENSOR REMARK 3 S11: 0.2853 S12: 0.5745 S13: 0.1977 REMARK 3 S21: -0.3551 S22: -0.2856 S23: -0.4936 REMARK 3 S31: -0.0872 S32: 0.2233 S33: 0.0124 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 9:21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.225 1.826 -4.428 REMARK 3 T TENSOR REMARK 3 T11: 0.3050 T22: 0.1860 REMARK 3 T33: 0.1852 T12: -0.0304 REMARK 3 T13: 0.0108 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 7.3038 L22: 9.7951 REMARK 3 L33: 6.6259 L12: 5.8749 REMARK 3 L13: 1.5813 L23: 4.6418 REMARK 3 S TENSOR REMARK 3 S11: 0.4729 S12: -0.4330 S13: -0.0972 REMARK 3 S21: 0.5212 S22: -0.4145 S23: -0.2603 REMARK 3 S31: 0.2063 S32: -0.0180 S33: -0.0767 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 28:33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.390 -13.769 -3.099 REMARK 3 T TENSOR REMARK 3 T11: 0.3913 T22: 0.7947 REMARK 3 T33: 0.6583 T12: -0.0826 REMARK 3 T13: -0.1367 T23: 0.0922 REMARK 3 L TENSOR REMARK 3 L11: 3.2477 L22: 8.1530 REMARK 3 L33: 4.1392 L12: 4.7543 REMARK 3 L13: 0.8856 L23: 3.4342 REMARK 3 S TENSOR REMARK 3 S11: -0.7332 S12: 0.5028 S13: 1.2829 REMARK 3 S21: -0.1718 S22: -1.0541 S23: -0.2854 REMARK 3 S31: -0.5513 S32: -0.7559 S33: 1.5660 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 34:51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.796 -21.352 -9.947 REMARK 3 T TENSOR REMARK 3 T11: 0.3063 T22: 0.1917 REMARK 3 T33: 0.1397 T12: 0.0147 REMARK 3 T13: 0.0421 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 9.8154 L22: 2.2438 REMARK 3 L33: 4.7619 L12: 2.4954 REMARK 3 L13: 1.0586 L23: -0.1125 REMARK 3 S TENSOR REMARK 3 S11: -0.1298 S12: 0.0968 S13: -0.4541 REMARK 3 S21: -0.2821 S22: 0.0672 S23: -0.1329 REMARK 3 S31: 0.3600 S32: 0.0376 S33: 0.0470 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN B AND RESID 52:68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.376 -11.188 -6.687 REMARK 3 T TENSOR REMARK 3 T11: 0.2131 T22: 0.1495 REMARK 3 T33: 0.1413 T12: 0.0168 REMARK 3 T13: 0.0160 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 5.3397 L22: 4.6175 REMARK 3 L33: 5.8893 L12: 3.4629 REMARK 3 L13: 0.0384 L23: -0.2860 REMARK 3 S TENSOR REMARK 3 S11: 0.0882 S12: -0.0173 S13: 0.0215 REMARK 3 S21: 0.1348 S22: 0.0095 S23: -0.1174 REMARK 3 S31: -0.0225 S32: 0.0563 S33: -0.0939 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN B AND RESID 69:98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.225 -7.242 -16.162 REMARK 3 T TENSOR REMARK 3 T11: 0.1482 T22: 0.1399 REMARK 3 T33: 0.0992 T12: -0.0265 REMARK 3 T13: 0.0029 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 5.2209 L22: 4.6942 REMARK 3 L33: 3.8996 L12: -1.4179 REMARK 3 L13: 1.4056 L23: -1.7006 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: -0.1692 S13: -0.0327 REMARK 3 S21: 0.0787 S22: 0.0562 S23: 0.1538 REMARK 3 S31: 0.0916 S32: -0.1501 S33: -0.0069 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: ( CHAIN B AND RESID 99:103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.257 -5.769 -24.639 REMARK 3 T TENSOR REMARK 3 T11: 0.2797 T22: 0.4168 REMARK 3 T33: 0.2909 T12: 0.0229 REMARK 3 T13: -0.0277 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 8.9383 L22: 9.1115 REMARK 3 L33: 4.3393 L12: 5.4438 REMARK 3 L13: 5.2563 L23: 5.8121 REMARK 3 S TENSOR REMARK 3 S11: -0.1565 S12: 0.0617 S13: -0.2649 REMARK 3 S21: -0.1406 S22: 0.7148 S23: -1.1863 REMARK 3 S31: 0.5028 S32: 1.8552 S33: -0.5180 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: ( CHAIN B AND RESID 104:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.082 -2.558 -25.888 REMARK 3 T TENSOR REMARK 3 T11: 0.1917 T22: 0.1337 REMARK 3 T33: 0.1539 T12: -0.0117 REMARK 3 T13: -0.0429 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 6.7883 L22: 3.5590 REMARK 3 L33: 9.0571 L12: -2.3822 REMARK 3 L13: -3.3920 L23: -0.5091 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0464 S13: 0.0601 REMARK 3 S21: -0.1358 S22: 0.1403 S23: 0.3287 REMARK 3 S31: -0.1465 S32: -0.4601 S33: -0.1361 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: ( CHAIN B AND RESID 125:134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.324 -2.224 -34.338 REMARK 3 T TENSOR REMARK 3 T11: 0.2992 T22: 0.2514 REMARK 3 T33: 0.1977 T12: -0.0321 REMARK 3 T13: -0.0282 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 5.7040 L22: 5.8958 REMARK 3 L33: 8.0700 L12: -3.1198 REMARK 3 L13: -5.4534 L23: 4.7254 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: 0.3611 S13: 0.5715 REMARK 3 S21: -0.4128 S22: 0.1414 S23: -0.1790 REMARK 3 S31: -0.5909 S32: 0.0931 S33: -0.1288 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: ( CHAIN B AND RESID 135:150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.003 -8.031 -35.655 REMARK 3 T TENSOR REMARK 3 T11: 0.2526 T22: 0.2843 REMARK 3 T33: 0.2076 T12: -0.0331 REMARK 3 T13: -0.0290 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 6.4617 L22: 8.3927 REMARK 3 L33: 6.1635 L12: -5.5539 REMARK 3 L13: -5.1462 L23: 4.5479 REMARK 3 S TENSOR REMARK 3 S11: 0.1868 S12: 0.3573 S13: -0.3112 REMARK 3 S21: -0.2213 S22: -0.3792 S23: 0.4261 REMARK 3 S31: 0.2935 S32: -0.4710 S33: 0.1873 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: ( CHAIN A AND RESID 16:23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.226 3.137 3.478 REMARK 3 T TENSOR REMARK 3 T11: 0.7566 T22: 0.5284 REMARK 3 T33: 1.0035 T12: -0.1318 REMARK 3 T13: -0.2464 T23: 0.2926 REMARK 3 L TENSOR REMARK 3 L11: 3.1647 L22: 4.4978 REMARK 3 L33: 4.1651 L12: -2.4503 REMARK 3 L13: 2.3259 L23: -4.1206 REMARK 3 S TENSOR REMARK 3 S11: -0.3588 S12: 0.0962 S13: -0.0104 REMARK 3 S21: -1.1422 S22: 0.2322 S23: 0.8388 REMARK 3 S31: 1.1741 S32: 0.0356 S33: 0.1047 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 16 THROUGH 24 OR REMARK 3 (RESID 25 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 26 REMARK 3 THROUGH 27 OR (RESID 28 THROUGH 30 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 31 THROUGH 33 OR REMARK 3 (RESID 34 THROUGH 35 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 36 THROUGH 40 OR RESID 42 THROUGH REMARK 3 43 OR RESID 45 THROUGH 48 OR RESID 50 REMARK 3 THROUGH 59 OR RESID 61 THROUGH 69 OR REMARK 3 RESID 71 THROUGH 72 OR RESID 74 THROUGH REMARK 3 78 OR RESID 80 THROUGH 100 OR (RESID 101 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD OR REMARK 3 NAME CE )) OR RESID 102 THROUGH 117 OR REMARK 3 (RESID 118 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 119 THROUGH 120 OR (RESID 121 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 122 THROUGH 123 OR REMARK 3 (RESID 124 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD )) OR RESID 125 THROUGH 130 OR RESID REMARK 3 132 THROUGH 144 OR RESID 146 THROUGH 149)) REMARK 3 SELECTION : (CHAIN 'B' AND ((RESID 16 THROUGH 19 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 20 THROUGH 40 OR REMARK 3 RESID 42 THROUGH 43 OR RESID 45 THROUGH REMARK 3 48 OR RESID 50 THROUGH 59 OR RESID 61 REMARK 3 THROUGH 66 OR (RESID 67 THROUGH 68 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 69 OR RESID 71 REMARK 3 THROUGH 72 OR RESID 74 THROUGH 78 OR REMARK 3 RESID 80 THROUGH 87 OR (RESID 88 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR RESID 89 THROUGH REMARK 3 124 OR (RESID 125 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 126 THROUGH 130 OR (RESID 132 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR RESID 133 REMARK 3 THROUGH 144 OR RESID 146 THROUGH 149)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7P42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292116553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.2 REMARK 200 DATA SCALING SOFTWARE : XDS 1.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 22.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.79500 REMARK 200 FOR SHELL : 2.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 7.0.047 REMARK 200 STARTING MODEL: 6SCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG 4000, 0.1 M TRIS PH 8.0, 0.3 REMARK 280 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.16400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.08200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.08200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.16400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 ILE A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 GLN B 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 16 CG1 CG2 CD1 REMARK 470 ASP A 17 CG OD1 OD2 REMARK 470 ILE A 19 CG1 CG2 CD1 REMARK 470 SER A 21 OG REMARK 470 ASN A 29 CG OD1 ND2 REMARK 470 MET A 35 SD CE REMARK 470 LYS A 49 CE NZ REMARK 470 GLU A 53 CD OE1 OE2 REMARK 470 PHE A 67 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 68 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 88 CD OE1 NE2 REMARK 470 LYS A 118 CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 GLN A 132 CD OE1 NE2 REMARK 470 LYS A 138 CE NZ REMARK 470 SER B 21 OG REMARK 470 LEU B 25 CG CD1 CD2 REMARK 470 ILE B 28 CG1 CG2 CD1 REMARK 470 ASN B 29 CG OD1 ND2 REMARK 470 ASP B 34 CG OD1 OD2 REMARK 470 MET B 35 CG SD CE REMARK 470 LYS B 49 CE NZ REMARK 470 GLU B 53 CD OE1 OE2 REMARK 470 LYS B 101 NZ REMARK 470 LYS B 118 CD CE NZ REMARK 470 LEU B 121 CG CD1 CD2 REMARK 470 LYS B 124 CE NZ REMARK 470 GLU B 125 CD OE1 OE2 REMARK 470 LYS B 138 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 101 -52.90 67.55 REMARK 500 SER B 21 5.94 54.75 REMARK 500 TYR B 68 41.93 -92.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 389 O REMARK 620 2 HOH B 319 O 174.1 REMARK 620 3 HOH B 330 O 96.6 87.9 REMARK 620 4 HOH B 342 O 90.4 85.5 94.0 REMARK 620 5 HOH B 363 O 97.0 87.3 83.8 172.6 REMARK 620 6 HOH B 381 O 86.7 89.1 173.0 92.1 89.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 312 O REMARK 620 2 HOH A 341 O 91.2 REMARK 620 3 SER B 41 OG 177.0 88.9 REMARK 620 4 HOH B 325 O 92.2 155.9 86.6 REMARK 620 5 HOH B 327 O 106.7 103.4 76.2 98.5 REMARK 620 6 HOH B 340 O 89.9 78.3 87.2 77.8 163.3 REMARK 620 N 1 2 3 4 5 DBREF 7P42 A 10 151 UNP P0A2U4 IPGC_SHIFL 10 151 DBREF 7P42 B 10 151 UNP P0A2U4 IPGC_SHIFL 10 151 SEQADV 7P42 GLY A 9 UNP P0A2U4 EXPRESSION TAG SEQADV 7P42 GLY B 9 UNP P0A2U4 EXPRESSION TAG SEQRES 1 A 143 GLY SER ILE SER THR ALA VAL ILE ASP ALA ILE ASN SER SEQRES 2 A 143 GLY ALA THR LEU LYS ASP ILE ASN ALA ILE PRO ASP ASP SEQRES 3 A 143 MET MET ASP ASP ILE TYR SER TYR ALA TYR ASP PHE TYR SEQRES 4 A 143 ASN LYS GLY ARG ILE GLU GLU ALA GLU VAL PHE PHE ARG SEQRES 5 A 143 PHE LEU CYS ILE TYR ASP PHE TYR ASN VAL ASP TYR ILE SEQRES 6 A 143 MET GLY LEU ALA ALA ILE TYR GLN ILE LYS GLU GLN PHE SEQRES 7 A 143 GLN GLN ALA ALA ASP LEU TYR ALA VAL ALA PHE ALA LEU SEQRES 8 A 143 GLY LYS ASN ASP TYR THR PRO VAL PHE HIS THR GLY GLN SEQRES 9 A 143 CYS GLN LEU ARG LEU LYS ALA PRO LEU LYS ALA LYS GLU SEQRES 10 A 143 CYS PHE GLU LEU VAL ILE GLN HIS SER ASN ASP GLU LYS SEQRES 11 A 143 LEU LYS ILE LYS ALA GLN SER TYR LEU ASP ALA ILE GLN SEQRES 1 B 143 GLY SER ILE SER THR ALA VAL ILE ASP ALA ILE ASN SER SEQRES 2 B 143 GLY ALA THR LEU LYS ASP ILE ASN ALA ILE PRO ASP ASP SEQRES 3 B 143 MET MET ASP ASP ILE TYR SER TYR ALA TYR ASP PHE TYR SEQRES 4 B 143 ASN LYS GLY ARG ILE GLU GLU ALA GLU VAL PHE PHE ARG SEQRES 5 B 143 PHE LEU CYS ILE TYR ASP PHE TYR ASN VAL ASP TYR ILE SEQRES 6 B 143 MET GLY LEU ALA ALA ILE TYR GLN ILE LYS GLU GLN PHE SEQRES 7 B 143 GLN GLN ALA ALA ASP LEU TYR ALA VAL ALA PHE ALA LEU SEQRES 8 B 143 GLY LYS ASN ASP TYR THR PRO VAL PHE HIS THR GLY GLN SEQRES 9 B 143 CYS GLN LEU ARG LEU LYS ALA PRO LEU LYS ALA LYS GLU SEQRES 10 B 143 CYS PHE GLU LEU VAL ILE GLN HIS SER ASN ASP GLU LYS SEQRES 11 B 143 LEU LYS ILE LYS ALA GLN SER TYR LEU ASP ALA ILE GLN HET MG A 201 1 HET CL A 202 1 HET DMS A 203 8 HET PEG A 204 7 HET MG B 201 1 HET CL B 202 1 HET CL B 203 1 HET 5I8 B 204 18 HET PEG B 205 7 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 5I8 2-(4,6-DIMETHYLPYRIMIDIN-2-YL)-3H-ISOINDOL-1-IMINE HETSYN 5I8 2-(4,6-DIMETHYLPYRIMIDIN-2-YL)-2,3-DIHYDRO-1H-ISOINDOL- HETSYN 2 5I8 1-IMINE; 3466575 FORMUL 3 MG 2(MG 2+) FORMUL 4 CL 3(CL 1-) FORMUL 5 DMS C2 H6 O S FORMUL 6 PEG 2(C4 H10 O3) FORMUL 10 5I8 C14 H14 N4 FORMUL 12 HOH *213(H2 O) HELIX 1 AA1 ILE A 16 GLY A 22 1 7 HELIX 2 AA2 PRO A 32 LYS A 49 1 18 HELIX 3 AA3 ARG A 51 ASP A 66 1 16 HELIX 4 AA4 ASN A 69 LYS A 83 1 15 HELIX 5 AA5 GLN A 85 LYS A 101 1 17 HELIX 6 AA6 TYR A 104 LEU A 117 1 14 HELIX 7 AA7 ALA A 119 SER A 134 1 16 HELIX 8 AA8 ASP A 136 ILE A 150 1 15 HELIX 9 AA9 SER B 10 SER B 21 1 12 HELIX 10 AB1 PRO B 32 LYS B 49 1 18 HELIX 11 AB2 ARG B 51 ASP B 66 1 16 HELIX 12 AB3 ASN B 69 LYS B 83 1 15 HELIX 13 AB4 GLN B 85 GLY B 100 1 16 HELIX 14 AB5 TYR B 104 LEU B 117 1 14 HELIX 15 AB6 ALA B 119 SER B 134 1 16 HELIX 16 AB7 ASP B 136 ILE B 150 1 15 LINK MG MG A 201 O HOH A 389 1555 1555 2.07 LINK MG MG A 201 O HOH B 319 1555 6454 2.24 LINK MG MG A 201 O HOH B 330 1555 6454 2.10 LINK MG MG A 201 O HOH B 342 1555 6454 1.94 LINK MG MG A 201 O HOH B 363 1555 6454 2.07 LINK MG MG A 201 O HOH B 381 1555 6454 1.98 LINK O HOH A 312 MG MG B 201 6444 1555 2.03 LINK O HOH A 341 MG MG B 201 6444 1555 2.04 LINK OG ASER B 41 MG MG B 201 1555 1555 2.34 LINK MG MG B 201 O HOH B 325 1555 1555 2.17 LINK MG MG B 201 O HOH B 327 1555 1555 1.98 LINK MG MG B 201 O HOH B 340 1555 1555 2.04 CRYST1 57.629 57.629 159.246 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017352 0.010018 0.000000 0.00000 SCALE2 0.000000 0.020037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006280 0.00000