HEADER FLAVOPROTEIN 11-JUL-21 7P4F TITLE CRYSTAL STRUCTURE OF MONOAMINE OXIDASE B IN COMPLEX WITH INHIBITOR 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINE OXIDASE [FLAVIN-CONTAINING] B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MONOAMINE OXIDASE TYPE B,MAO-B; COMPND 5 EC: 1.4.3.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAOB; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS MONOAMINE OXIDASE, DRUG TARGET, NEURODEGENERATION, MITOCHONDRIAL KEYWDS 2 MEMBRANE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.G.IACOVINO,C.BINDA,L.PISANI REVDAT 2 31-JAN-24 7P4F 1 REMARK REVDAT 1 18-MAY-22 7P4F 0 JRNL AUTH F.EKSTROM,A.GOTTINGER,N.FORSGREN,M.CATTO,L.G.IACOVINO, JRNL AUTH 2 L.PISANI,C.BINDA JRNL TITL DUAL REVERSIBLE COUMARIN INHIBITORS MUTUALLY BOUND TO JRNL TITL 2 MONOAMINE OXIDASE B AND ACETYLCHOLINESTERASE CRYSTAL JRNL TITL 3 STRUCTURES. JRNL REF ACS MED.CHEM.LETT. V. 13 499 2022 JRNL REFN ISSN 1948-5875 JRNL PMID 35300078 JRNL DOI 10.1021/ACSMEDCHEMLETT.2C00001 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 54746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1455 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4014 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 193 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.27000 REMARK 3 B22 (A**2) : -2.06000 REMARK 3 B33 (A**2) : -1.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.240 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.734 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8317 ; 0.011 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 7513 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11306 ; 1.446 ; 1.699 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17606 ; 1.472 ; 1.653 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 991 ; 6.712 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 416 ;31.427 ;21.635 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1410 ;15.653 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;17.063 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1053 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9143 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1475 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7P4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292116986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54746 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2V5Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, LITHIUM SULFATE, ADA BUFFER, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 65.62150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 111.21400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 65.62150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 111.21400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 65.62150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 111.21400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 65.62150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 111.21400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 881 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 839 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PHE A 502 REMARK 465 SER A 503 REMARK 465 ALA A 504 REMARK 465 THR A 505 REMARK 465 ALA A 506 REMARK 465 LEU A 507 REMARK 465 GLY A 508 REMARK 465 PHE A 509 REMARK 465 LEU A 510 REMARK 465 ALA A 511 REMARK 465 HIS A 512 REMARK 465 LYS A 513 REMARK 465 ARG A 514 REMARK 465 GLY A 515 REMARK 465 LEU A 516 REMARK 465 LEU A 517 REMARK 465 VAL A 518 REMARK 465 ARG A 519 REMARK 465 VAL A 520 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 497 REMARK 465 LEU B 498 REMARK 465 THR B 499 REMARK 465 THR B 500 REMARK 465 ILE B 501 REMARK 465 PHE B 502 REMARK 465 SER B 503 REMARK 465 ALA B 504 REMARK 465 THR B 505 REMARK 465 ALA B 506 REMARK 465 LEU B 507 REMARK 465 GLY B 508 REMARK 465 PHE B 509 REMARK 465 LEU B 510 REMARK 465 ALA B 511 REMARK 465 HIS B 512 REMARK 465 LYS B 513 REMARK 465 ARG B 514 REMARK 465 GLY B 515 REMARK 465 LEU B 516 REMARK 465 LEU B 517 REMARK 465 VAL B 518 REMARK 465 ARG B 519 REMARK 465 VAL B 520 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 494 O HOH B 701 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 816 O HOH B 897 6565 1.85 REMARK 500 NE2 GLN A 475 NE2 GLN A 475 3656 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 52 -67.38 60.25 REMARK 500 SER A 59 -51.35 -141.86 REMARK 500 THR A 64 -5.93 84.21 REMARK 500 ALA A 133 65.25 -162.13 REMARK 500 THR A 201 -78.06 -88.43 REMARK 500 HIS A 252 26.37 81.23 REMARK 500 ALA A 346 -127.54 54.99 REMARK 500 ASP A 419 -103.59 57.49 REMARK 500 ALA A 424 -155.88 -115.10 REMARK 500 THR A 500 57.48 -102.44 REMARK 500 LYS B 52 -73.54 65.38 REMARK 500 SER B 59 -48.76 -145.24 REMARK 500 THR B 64 -3.94 78.76 REMARK 500 GLU B 84 34.93 -141.54 REMARK 500 ALA B 133 69.72 -164.21 REMARK 500 THR B 201 -77.36 -77.66 REMARK 500 ARG B 233 72.95 -119.28 REMARK 500 HIS B 252 9.92 83.83 REMARK 500 ALA B 346 -124.66 59.39 REMARK 500 ASP B 419 -103.31 63.02 REMARK 500 ALA B 424 -154.08 -115.42 REMARK 500 LEU B 495 20.48 -77.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 127 0.13 SIDE CHAIN REMARK 500 ARG A 350 0.08 SIDE CHAIN REMARK 500 ARG A 415 0.12 SIDE CHAIN REMARK 500 ARG B 127 0.10 SIDE CHAIN REMARK 500 ARG B 350 0.09 SIDE CHAIN REMARK 500 ARG B 415 0.12 SIDE CHAIN REMARK 500 ARG B 484 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C15 A 603 REMARK 610 C15 B 603 DBREF 7P4F A 1 520 UNP P27338 AOFB_HUMAN 1 520 DBREF 7P4F B 1 520 UNP P27338 AOFB_HUMAN 1 520 SEQRES 1 A 520 MET SER ASN LYS CYS ASP VAL VAL VAL VAL GLY GLY GLY SEQRES 2 A 520 ILE SER GLY MET ALA ALA ALA LYS LEU LEU HIS ASP SER SEQRES 3 A 520 GLY LEU ASN VAL VAL VAL LEU GLU ALA ARG ASP ARG VAL SEQRES 4 A 520 GLY GLY ARG THR TYR THR LEU ARG ASN GLN LYS VAL LYS SEQRES 5 A 520 TYR VAL ASP LEU GLY GLY SER TYR VAL GLY PRO THR GLN SEQRES 6 A 520 ASN ARG ILE LEU ARG LEU ALA LYS GLU LEU GLY LEU GLU SEQRES 7 A 520 THR TYR LYS VAL ASN GLU VAL GLU ARG LEU ILE HIS HIS SEQRES 8 A 520 VAL LYS GLY LYS SER TYR PRO PHE ARG GLY PRO PHE PRO SEQRES 9 A 520 PRO VAL TRP ASN PRO ILE THR TYR LEU ASP HIS ASN ASN SEQRES 10 A 520 PHE TRP ARG THR MET ASP ASP MET GLY ARG GLU ILE PRO SEQRES 11 A 520 SER ASP ALA PRO TRP LYS ALA PRO LEU ALA GLU GLU TRP SEQRES 12 A 520 ASP ASN MET THR MET LYS GLU LEU LEU ASP LYS LEU CYS SEQRES 13 A 520 TRP THR GLU SER ALA LYS GLN LEU ALA THR LEU PHE VAL SEQRES 14 A 520 ASN LEU CYS VAL THR ALA GLU THR HIS GLU VAL SER ALA SEQRES 15 A 520 LEU TRP PHE LEU TRP TYR VAL LYS GLN CYS GLY GLY THR SEQRES 16 A 520 THR ARG ILE ILE SER THR THR ASN GLY GLY GLN GLU ARG SEQRES 17 A 520 LYS PHE VAL GLY GLY SER GLY GLN VAL SER GLU ARG ILE SEQRES 18 A 520 MET ASP LEU LEU GLY ASP ARG VAL LYS LEU GLU ARG PRO SEQRES 19 A 520 VAL ILE TYR ILE ASP GLN THR ARG GLU ASN VAL LEU VAL SEQRES 20 A 520 GLU THR LEU ASN HIS GLU MET TYR GLU ALA LYS TYR VAL SEQRES 21 A 520 ILE SER ALA ILE PRO PRO THR LEU GLY MET LYS ILE HIS SEQRES 22 A 520 PHE ASN PRO PRO LEU PRO MET MET ARG ASN GLN MET ILE SEQRES 23 A 520 THR ARG VAL PRO LEU GLY SER VAL ILE LYS CYS ILE VAL SEQRES 24 A 520 TYR TYR LYS GLU PRO PHE TRP ARG LYS LYS ASP TYR CYS SEQRES 25 A 520 GLY THR MET ILE ILE ASP GLY GLU GLU ALA PRO VAL ALA SEQRES 26 A 520 TYR THR LEU ASP ASP THR LYS PRO GLU GLY ASN TYR ALA SEQRES 27 A 520 ALA ILE MET GLY PHE ILE LEU ALA HIS LYS ALA ARG LYS SEQRES 28 A 520 LEU ALA ARG LEU THR LYS GLU GLU ARG LEU LYS LYS LEU SEQRES 29 A 520 CYS GLU LEU TYR ALA LYS VAL LEU GLY SER LEU GLU ALA SEQRES 30 A 520 LEU GLU PRO VAL HIS TYR GLU GLU LYS ASN TRP CYS GLU SEQRES 31 A 520 GLU GLN TYR SER GLY GLY CYS TYR THR THR TYR PHE PRO SEQRES 32 A 520 PRO GLY ILE LEU THR GLN TYR GLY ARG VAL LEU ARG GLN SEQRES 33 A 520 PRO VAL ASP ARG ILE TYR PHE ALA GLY THR GLU THR ALA SEQRES 34 A 520 THR HIS TRP SER GLY TYR MET GLU GLY ALA VAL GLU ALA SEQRES 35 A 520 GLY GLU ARG ALA ALA ARG GLU ILE LEU HIS ALA MET GLY SEQRES 36 A 520 LYS ILE PRO GLU ASP GLU ILE TRP GLN SER GLU PRO GLU SEQRES 37 A 520 SER VAL ASP VAL PRO ALA GLN PRO ILE THR THR THR PHE SEQRES 38 A 520 LEU GLU ARG HIS LEU PRO SER VAL PRO GLY LEU LEU ARG SEQRES 39 A 520 LEU ILE GLY LEU THR THR ILE PHE SER ALA THR ALA LEU SEQRES 40 A 520 GLY PHE LEU ALA HIS LYS ARG GLY LEU LEU VAL ARG VAL SEQRES 1 B 520 MET SER ASN LYS CYS ASP VAL VAL VAL VAL GLY GLY GLY SEQRES 2 B 520 ILE SER GLY MET ALA ALA ALA LYS LEU LEU HIS ASP SER SEQRES 3 B 520 GLY LEU ASN VAL VAL VAL LEU GLU ALA ARG ASP ARG VAL SEQRES 4 B 520 GLY GLY ARG THR TYR THR LEU ARG ASN GLN LYS VAL LYS SEQRES 5 B 520 TYR VAL ASP LEU GLY GLY SER TYR VAL GLY PRO THR GLN SEQRES 6 B 520 ASN ARG ILE LEU ARG LEU ALA LYS GLU LEU GLY LEU GLU SEQRES 7 B 520 THR TYR LYS VAL ASN GLU VAL GLU ARG LEU ILE HIS HIS SEQRES 8 B 520 VAL LYS GLY LYS SER TYR PRO PHE ARG GLY PRO PHE PRO SEQRES 9 B 520 PRO VAL TRP ASN PRO ILE THR TYR LEU ASP HIS ASN ASN SEQRES 10 B 520 PHE TRP ARG THR MET ASP ASP MET GLY ARG GLU ILE PRO SEQRES 11 B 520 SER ASP ALA PRO TRP LYS ALA PRO LEU ALA GLU GLU TRP SEQRES 12 B 520 ASP ASN MET THR MET LYS GLU LEU LEU ASP LYS LEU CYS SEQRES 13 B 520 TRP THR GLU SER ALA LYS GLN LEU ALA THR LEU PHE VAL SEQRES 14 B 520 ASN LEU CYS VAL THR ALA GLU THR HIS GLU VAL SER ALA SEQRES 15 B 520 LEU TRP PHE LEU TRP TYR VAL LYS GLN CYS GLY GLY THR SEQRES 16 B 520 THR ARG ILE ILE SER THR THR ASN GLY GLY GLN GLU ARG SEQRES 17 B 520 LYS PHE VAL GLY GLY SER GLY GLN VAL SER GLU ARG ILE SEQRES 18 B 520 MET ASP LEU LEU GLY ASP ARG VAL LYS LEU GLU ARG PRO SEQRES 19 B 520 VAL ILE TYR ILE ASP GLN THR ARG GLU ASN VAL LEU VAL SEQRES 20 B 520 GLU THR LEU ASN HIS GLU MET TYR GLU ALA LYS TYR VAL SEQRES 21 B 520 ILE SER ALA ILE PRO PRO THR LEU GLY MET LYS ILE HIS SEQRES 22 B 520 PHE ASN PRO PRO LEU PRO MET MET ARG ASN GLN MET ILE SEQRES 23 B 520 THR ARG VAL PRO LEU GLY SER VAL ILE LYS CYS ILE VAL SEQRES 24 B 520 TYR TYR LYS GLU PRO PHE TRP ARG LYS LYS ASP TYR CYS SEQRES 25 B 520 GLY THR MET ILE ILE ASP GLY GLU GLU ALA PRO VAL ALA SEQRES 26 B 520 TYR THR LEU ASP ASP THR LYS PRO GLU GLY ASN TYR ALA SEQRES 27 B 520 ALA ILE MET GLY PHE ILE LEU ALA HIS LYS ALA ARG LYS SEQRES 28 B 520 LEU ALA ARG LEU THR LYS GLU GLU ARG LEU LYS LYS LEU SEQRES 29 B 520 CYS GLU LEU TYR ALA LYS VAL LEU GLY SER LEU GLU ALA SEQRES 30 B 520 LEU GLU PRO VAL HIS TYR GLU GLU LYS ASN TRP CYS GLU SEQRES 31 B 520 GLU GLN TYR SER GLY GLY CYS TYR THR THR TYR PHE PRO SEQRES 32 B 520 PRO GLY ILE LEU THR GLN TYR GLY ARG VAL LEU ARG GLN SEQRES 33 B 520 PRO VAL ASP ARG ILE TYR PHE ALA GLY THR GLU THR ALA SEQRES 34 B 520 THR HIS TRP SER GLY TYR MET GLU GLY ALA VAL GLU ALA SEQRES 35 B 520 GLY GLU ARG ALA ALA ARG GLU ILE LEU HIS ALA MET GLY SEQRES 36 B 520 LYS ILE PRO GLU ASP GLU ILE TRP GLN SER GLU PRO GLU SEQRES 37 B 520 SER VAL ASP VAL PRO ALA GLN PRO ILE THR THR THR PHE SEQRES 38 B 520 LEU GLU ARG HIS LEU PRO SER VAL PRO GLY LEU LEU ARG SEQRES 39 B 520 LEU ILE GLY LEU THR THR ILE PHE SER ALA THR ALA LEU SEQRES 40 B 520 GLY PHE LEU ALA HIS LYS ARG GLY LEU LEU VAL ARG VAL HET FAD A 601 53 HET 5IK A 602 31 HET C15 A 603 14 HET FAD B 601 53 HET 5IK B 602 31 HET C15 B 603 11 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 5IK 4-(HYDROXYMETHYL)-7-[[4-[[METHYL-(PHENYLMETHYL) HETNAM 2 5IK AMINO]METHYL]PHENYL]METHOXY]CHROMEN-2-ONE HETNAM C15 N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 5IK 2(C26 H25 N O4) FORMUL 5 C15 2(C17 H38 N O3 S 1+) FORMUL 9 HOH *383(H2 O) HELIX 1 AA1 GLY A 13 SER A 26 1 14 HELIX 2 AA2 GLN A 65 LEU A 75 1 11 HELIX 3 AA3 ASN A 108 GLU A 128 1 21 HELIX 4 AA4 ALA A 133 ALA A 137 5 5 HELIX 5 AA5 LEU A 139 ASN A 145 1 7 HELIX 6 AA6 THR A 147 CYS A 156 1 10 HELIX 7 AA7 THR A 158 THR A 174 1 17 HELIX 8 AA8 SER A 181 CYS A 192 1 12 HELIX 9 AA9 GLY A 194 SER A 200 1 7 HELIX 10 AB1 SER A 214 GLY A 226 1 13 HELIX 11 AB2 PRO A 265 ILE A 272 5 8 HELIX 12 AB3 PRO A 279 ILE A 286 1 8 HELIX 13 AB4 PRO A 304 LYS A 309 1 6 HELIX 14 AB5 ALA A 346 ARG A 354 1 9 HELIX 15 AB6 THR A 356 GLY A 373 1 18 HELIX 16 AB7 SER A 374 GLU A 379 5 6 HELIX 17 AB8 CYS A 389 GLU A 391 5 3 HELIX 18 AB9 GLY A 405 GLY A 411 1 7 HELIX 19 AC1 ARG A 412 LEU A 414 5 3 HELIX 20 AC2 GLY A 425 ALA A 429 5 5 HELIX 21 AC3 TYR A 435 MET A 454 1 20 HELIX 22 AC4 PRO A 458 ILE A 462 5 5 HELIX 23 AC5 THR A 480 LEU A 486 1 7 HELIX 24 AC6 SER A 488 THR A 500 1 13 HELIX 25 AC7 GLY B 13 SER B 26 1 14 HELIX 26 AC8 GLN B 65 LEU B 75 1 11 HELIX 27 AC9 ASN B 108 ARG B 127 1 20 HELIX 28 AD1 ALA B 133 ALA B 137 5 5 HELIX 29 AD2 LEU B 139 ASN B 145 1 7 HELIX 30 AD3 THR B 147 CYS B 156 1 10 HELIX 31 AD4 THR B 158 THR B 174 1 17 HELIX 32 AD5 SER B 181 GLN B 191 1 11 HELIX 33 AD6 GLY B 194 SER B 200 1 7 HELIX 34 AD7 SER B 214 GLY B 226 1 13 HELIX 35 AD8 PRO B 265 ILE B 272 5 8 HELIX 36 AD9 PRO B 279 ILE B 286 1 8 HELIX 37 AE1 PRO B 304 LYS B 309 5 6 HELIX 38 AE2 ALA B 346 ALA B 353 1 8 HELIX 39 AE3 THR B 356 GLY B 373 1 18 HELIX 40 AE4 SER B 374 GLU B 379 5 6 HELIX 41 AE5 CYS B 389 GLU B 391 5 3 HELIX 42 AE6 GLY B 405 GLY B 411 1 7 HELIX 43 AE7 ARG B 412 LEU B 414 5 3 HELIX 44 AE8 GLY B 425 ALA B 429 5 5 HELIX 45 AE9 TYR B 435 MET B 454 1 20 HELIX 46 AF1 PRO B 458 ILE B 462 5 5 HELIX 47 AF2 THR B 480 LEU B 486 1 7 HELIX 48 AF3 SER B 488 LEU B 495 1 8 SHEET 1 AA1 5 VAL A 229 LYS A 230 0 SHEET 2 AA1 5 VAL A 30 LEU A 33 1 N VAL A 32 O LYS A 230 SHEET 3 AA1 5 VAL A 7 VAL A 10 1 N VAL A 9 O LEU A 33 SHEET 4 AA1 5 TYR A 259 SER A 262 1 O ILE A 261 N VAL A 10 SHEET 5 AA1 5 ILE A 421 PHE A 423 1 O TYR A 422 N SER A 262 SHEET 1 AA2 2 THR A 45 LEU A 46 0 SHEET 2 AA2 2 VAL A 54 ASP A 55 -1 O VAL A 54 N LEU A 46 SHEET 1 AA3 3 TYR A 60 VAL A 61 0 SHEET 2 AA3 3 ARG A 208 PHE A 210 -1 O ARG A 208 N VAL A 61 SHEET 3 AA3 3 THR A 79 LYS A 81 -1 N TYR A 80 O LYS A 209 SHEET 1 AA4 7 LYS A 95 PHE A 99 0 SHEET 2 AA4 7 ARG A 87 VAL A 92 -1 N LEU A 88 O PHE A 99 SHEET 3 AA4 7 TYR A 311 ILE A 317 1 O ILE A 316 N HIS A 91 SHEET 4 AA4 7 TYR A 326 ASP A 329 -1 O THR A 327 N MET A 315 SHEET 5 AA4 7 ALA A 339 LEU A 345 -1 O MET A 341 N LEU A 328 SHEET 6 AA4 7 VAL A 294 TYR A 300 -1 N CYS A 297 O GLY A 342 SHEET 7 AA4 7 HIS A 382 ASN A 387 -1 O GLU A 384 N ILE A 298 SHEET 1 AA5 4 MET A 254 ALA A 257 0 SHEET 2 AA5 4 VAL A 245 THR A 249 -1 N VAL A 247 O TYR A 255 SHEET 3 AA5 4 VAL A 235 ASP A 239 -1 N TYR A 237 O GLU A 248 SHEET 4 AA5 4 HIS A 273 ASN A 275 1 O HIS A 273 N ILE A 236 SHEET 1 AA6 5 VAL B 229 LYS B 230 0 SHEET 2 AA6 5 VAL B 30 LEU B 33 1 N VAL B 32 O LYS B 230 SHEET 3 AA6 5 VAL B 7 VAL B 10 1 N VAL B 9 O VAL B 31 SHEET 4 AA6 5 TYR B 259 SER B 262 1 O ILE B 261 N VAL B 10 SHEET 5 AA6 5 ILE B 421 PHE B 423 1 O TYR B 422 N SER B 262 SHEET 1 AA7 2 THR B 45 ASN B 48 0 SHEET 2 AA7 2 LYS B 52 ASP B 55 -1 O LYS B 52 N ASN B 48 SHEET 1 AA8 3 TYR B 60 VAL B 61 0 SHEET 2 AA8 3 ARG B 208 PHE B 210 -1 O ARG B 208 N VAL B 61 SHEET 3 AA8 3 THR B 79 LYS B 81 -1 N TYR B 80 O LYS B 209 SHEET 1 AA9 7 LYS B 95 PHE B 99 0 SHEET 2 AA9 7 ARG B 87 VAL B 92 -1 N HIS B 90 O TYR B 97 SHEET 3 AA9 7 TYR B 311 ILE B 317 1 O ILE B 316 N ILE B 89 SHEET 4 AA9 7 TYR B 326 ASP B 329 -1 O THR B 327 N MET B 315 SHEET 5 AA9 7 ALA B 339 LEU B 345 -1 O MET B 341 N LEU B 328 SHEET 6 AA9 7 VAL B 294 TYR B 300 -1 N CYS B 297 O GLY B 342 SHEET 7 AA9 7 HIS B 382 ASN B 387 -1 O GLU B 384 N ILE B 298 SHEET 1 AB1 4 MET B 254 ALA B 257 0 SHEET 2 AB1 4 VAL B 245 THR B 249 -1 N VAL B 247 O TYR B 255 SHEET 3 AB1 4 VAL B 235 ASP B 239 -1 N TYR B 237 O GLU B 248 SHEET 4 AB1 4 HIS B 273 ASN B 275 1 O HIS B 273 N ILE B 236 LINK SG CYS A 397 C8M FAD A 601 1555 1555 1.66 LINK SG CYS B 397 C8M FAD B 601 1555 1555 1.67 CISPEP 1 ASN A 275 PRO A 276 0 -1.78 CISPEP 2 CYS A 397 TYR A 398 0 -2.41 CISPEP 3 ASN B 275 PRO B 276 0 -1.98 CISPEP 4 CYS B 397 TYR B 398 0 3.37 CRYST1 131.243 222.428 86.206 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007619 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011600 0.00000