HEADER HYDROLASE 11-JUL-21 7P4J TITLE CRYSTAL STRUCTURE OF AUTOTAXIN AND TETRAHYDROCANNABINOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY COMPND 3 MEMBER 2; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: E-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD; COMPND 6 EC: 3.1.4.39; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ENPP2, ATX, NPPS2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS TETRAHYDROCANNABINOL, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.EYMERY,A.A.MCCARTHY,J.HAUSMANN REVDAT 4 23-OCT-24 7P4J 1 REMARK REVDAT 3 07-FEB-24 7P4J 1 REMARK REVDAT 2 25-JAN-23 7P4J 1 JRNL REVDAT 1 28-DEC-22 7P4J 0 JRNL AUTH M.C.EYMERY,A.A.MCCARTHY,J.HAUSMANN JRNL TITL LINKING MEDICINAL CANNABIS TO AUTOTAXIN-LYSOPHOSPHATIDIC JRNL TITL 2 ACID SIGNALING. JRNL REF LIFE SCI ALLIANCE V. 6 2023 JRNL REFN ESSN 2575-1077 JRNL PMID 36623871 JRNL DOI 10.26508/LSA.202201595 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 68 352 2012 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.9 REMARK 3 NUMBER OF REFLECTIONS : 47876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.190 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.2400 - 4.3200 1.00 4979 221 0.1859 0.2289 REMARK 3 2 4.3200 - 3.4300 1.00 4969 223 0.1494 0.2112 REMARK 3 3 3.4300 - 3.0000 1.00 4942 218 0.1643 0.2227 REMARK 3 4 3.0000 - 2.7200 1.00 4991 211 0.1777 0.2391 REMARK 3 5 2.7200 - 2.5300 1.00 4952 220 0.1901 0.2645 REMARK 3 6 2.5300 - 2.3800 0.99 4955 216 0.1978 0.2491 REMARK 3 7 2.3800 - 2.2600 0.87 4324 175 0.2036 0.2851 REMARK 3 8 2.2600 - 2.1600 0.59 2929 139 0.2091 0.2564 REMARK 3 9 2.1600 - 2.0800 0.62 3120 127 0.2162 0.2762 REMARK 3 10 2.0800 - 2.0100 0.50 2479 115 0.2342 0.2937 REMARK 3 11 2.0100 - 1.9400 0.36 1777 74 0.2440 0.2947 REMARK 3 12 1.9400 - 1.8900 0.18 910 41 0.2898 0.3179 REMARK 3 13 1.8900 - 1.8400 0.09 445 22 0.2746 0.4293 REMARK 3 14 1.8400 - 1.7900 0.02 99 3 0.2891 0.2527 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.195 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.801 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6533 REMARK 3 ANGLE : 0.997 8852 REMARK 3 CHIRALITY : 0.057 930 REMARK 3 PLANARITY : 0.006 1142 REMARK 3 DIHEDRAL : 7.962 914 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7P4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292116977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS, STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47909 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 61.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.16900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 1.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2XR9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-22% (M/V) PEG3350, 0.1-0.3 M NH4I REMARK 280 AND 0.3 M NASCN, PH 7.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 36 REMARK 465 GLU A 37 REMARK 465 TRP A 38 REMARK 465 ASP A 39 REMARK 465 GLU A 40 REMARK 465 GLY A 41 REMARK 465 PRO A 42 REMARK 465 PRO A 43 REMARK 465 THR A 44 REMARK 465 VAL A 45 REMARK 465 LEU A 46 REMARK 465 SER A 47 REMARK 465 ASP A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 TRP A 51 REMARK 465 THR A 52 REMARK 465 ASN A 53 REMARK 465 THR A 54 REMARK 465 SER A 55 REMARK 465 GLN A 66 REMARK 465 GLU A 67 REMARK 465 VAL A 68 REMARK 465 GLY A 69 REMARK 465 PRO A 70 REMARK 465 PRO A 71 REMARK 465 ASP A 72 REMARK 465 SER A 396 REMARK 465 ILE A 397 REMARK 465 ASN A 398 REMARK 465 ASN A 399 REMARK 465 SER A 400 REMARK 465 LYS A 401 REMARK 465 TYR A 402 REMARK 465 ASP A 570 REMARK 465 LYS A 571 REMARK 465 VAL A 572 REMARK 465 GLU A 573 REMARK 465 PRO A 574 REMARK 465 LYS A 575 REMARK 465 ASN A 576 REMARK 465 LYS A 577 REMARK 465 LEU A 578 REMARK 465 GLU A 579 REMARK 465 GLU A 580 REMARK 465 PHE A 581 REMARK 465 ASN A 582 REMARK 465 LYS A 583 REMARK 465 ARG A 584 REMARK 465 LEU A 585 REMARK 465 HIS A 586 REMARK 465 THR A 587 REMARK 465 LYS A 588 REMARK 465 GLU A 859 REMARK 465 SER A 860 REMARK 465 GLU A 861 REMARK 465 ILE A 862 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 134 NE2 GLN A 344 2.04 REMARK 500 N LEU A 558 OE1 GLU A 561 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 91 NH2 ARG A 549 1656 1.87 REMARK 500 O HOH A 1270 O HOH A 1321 1666 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 540 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 61 32.78 -149.73 REMARK 500 SER A 84 13.95 -176.11 REMARK 500 LEU A 94 52.65 -117.85 REMARK 500 THR A 96 -8.95 -145.57 REMARK 500 ASP A 128 29.56 -149.82 REMARK 500 ASP A 363 109.52 -59.68 REMARK 500 ARG A 368 73.10 -102.70 REMARK 500 ASP A 417 57.43 -106.60 REMARK 500 ALA A 435 -31.57 -152.93 REMARK 500 ARG A 450 -0.47 78.26 REMARK 500 ASP A 477 129.44 -31.14 REMARK 500 THR A 485 -162.22 -126.73 REMARK 500 ASP A 563 -88.62 -79.42 REMARK 500 LEU A 564 -38.85 62.10 REMARK 500 GLU A 593 33.59 -72.37 REMARK 500 SER A 676 -158.03 -104.11 REMARK 500 SER A 688 152.91 179.94 REMARK 500 ASP A 785 -70.50 -81.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 82 SER A 83 -142.05 REMARK 500 SER A 590 THR A 591 149.26 REMARK 500 GLU A 593 ARG A 594 147.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1404 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A1405 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A1406 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH A1407 DISTANCE = 10.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD1 REMARK 620 2 ASP A 171 OD2 54.7 REMARK 620 3 THR A 209 OG1 121.0 83.9 REMARK 620 4 ASP A 358 OD2 97.9 76.1 111.9 REMARK 620 5 HIS A 359 NE2 116.4 167.5 108.5 98.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 937 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 250 OD1 REMARK 620 2 HOH A1185 O 63.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 311 OD1 REMARK 620 2 ASP A 311 OD2 54.3 REMARK 620 3 HIS A 315 NE2 104.2 93.1 REMARK 620 4 PO4 A 915 O2 157.5 113.5 94.7 REMARK 620 5 PO4 A 915 O3 91.8 76.9 151.4 66.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 936 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 669 O REMARK 620 2 ASP A 672 O 69.6 REMARK 620 3 MET A 675 O 99.5 87.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 935 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 739 OD1 REMARK 620 2 ASN A 741 OD1 78.6 REMARK 620 3 ASP A 743 OD1 81.4 87.4 REMARK 620 4 LEU A 745 O 95.6 171.0 84.9 REMARK 620 5 ASP A 747 OD1 97.0 86.6 174.0 101.0 REMARK 620 6 HOH A1174 O 164.4 92.4 85.5 91.7 95.1 REMARK 620 N 1 2 3 4 5 DBREF 7P4J A 36 862 UNP Q64610 ENPP2_RAT 36 862 SEQADV 7P4J ALA A 410 UNP Q64610 ASN 410 ENGINEERED MUTATION SEQADV 7P4J PHE A 581 UNP Q64610 LEU 581 ENGINEERED MUTATION SEQADV 7P4J THR A 591 UNP Q64610 ARG 591 ENGINEERED MUTATION SEQADV 7P4J ALA A 806 UNP Q64610 ASN 806 ENGINEERED MUTATION SEQRES 1 A 827 ALA GLU TRP ASP GLU GLY PRO PRO THR VAL LEU SER ASP SEQRES 2 A 827 SER PRO TRP THR ASN THR SER GLY SER CYS LYS GLY ARG SEQRES 3 A 827 CYS PHE GLU LEU GLN GLU VAL GLY PRO PRO ASP CYS ARG SEQRES 4 A 827 CYS ASP ASN LEU CYS LYS SER TYR SER SER CYS CYS HIS SEQRES 5 A 827 ASP PHE ASP GLU LEU CYS LEU LYS THR ALA ARG GLY TRP SEQRES 6 A 827 GLU CYS THR LYS ASP ARG CYS GLY GLU VAL ARG ASN GLU SEQRES 7 A 827 GLU ASN ALA CYS HIS CYS SER GLU ASP CYS LEU SER ARG SEQRES 8 A 827 GLY ASP CYS CYS THR ASN TYR GLN VAL VAL CYS LYS GLY SEQRES 9 A 827 GLU SER HIS TRP VAL ASP ASP ASP CYS GLU GLU ILE LYS SEQRES 10 A 827 VAL PRO GLU CYS PRO ALA GLY PHE VAL ARG PRO PRO LEU SEQRES 11 A 827 ILE ILE PHE SER VAL ASP GLY PHE ARG ALA SER TYR MET SEQRES 12 A 827 LYS LYS GLY SER LYS VAL MET PRO ASN ILE GLU LYS LEU SEQRES 13 A 827 ARG SER CYS GLY THR HIS ALA PRO TYR MET ARG PRO VAL SEQRES 14 A 827 TYR PRO THR LYS THR PHE PRO ASN LEU TYR THR LEU ALA SEQRES 15 A 827 THR GLY LEU TYR PRO GLU SER HIS GLY ILE VAL GLY ASN SEQRES 16 A 827 SER MET TYR ASP PRO VAL PHE ASP ALA SER PHE HIS LEU SEQRES 17 A 827 ARG GLY ARG GLU LYS PHE ASN HIS ARG TRP TRP GLY GLY SEQRES 18 A 827 GLN PRO LEU TRP ILE THR ALA THR LYS GLN GLY VAL ARG SEQRES 19 A 827 ALA GLY THR PHE PHE TRP SER VAL SER ILE PRO HIS GLU SEQRES 20 A 827 ARG ARG ILE LEU THR ILE LEU GLN TRP LEU SER LEU PRO SEQRES 21 A 827 ASP ASN GLU ARG PRO SER VAL TYR ALA PHE TYR SER GLU SEQRES 22 A 827 GLN PRO ASP PHE SER GLY HIS LYS TYR GLY PRO PHE GLY SEQRES 23 A 827 PRO GLU MET THR ASN PRO LEU ARG GLU ILE ASP LYS THR SEQRES 24 A 827 VAL GLY GLN LEU MET ASP GLY LEU LYS GLN LEU ARG LEU SEQRES 25 A 827 HIS ARG CYS VAL ASN VAL ILE PHE VAL GLY ASP HIS GLY SEQRES 26 A 827 MET GLU ASP VAL THR CYS ASP ARG THR GLU PHE LEU SER SEQRES 27 A 827 ASN TYR LEU THR ASN VAL ASP ASP ILE THR LEU VAL PRO SEQRES 28 A 827 GLY THR LEU GLY ARG ILE ARG ALA LYS SER ILE ASN ASN SEQRES 29 A 827 SER LYS TYR ASP PRO LYS THR ILE ILE ALA ALA LEU THR SEQRES 30 A 827 CYS LYS LYS PRO ASP GLN HIS PHE LYS PRO TYR MET LYS SEQRES 31 A 827 GLN HIS LEU PRO LYS ARG LEU HIS TYR ALA ASN ASN ARG SEQRES 32 A 827 ARG ILE GLU ASP ILE HIS LEU LEU VAL ASP ARG ARG TRP SEQRES 33 A 827 HIS VAL ALA ARG LYS PRO LEU ASP VAL TYR LYS LYS PRO SEQRES 34 A 827 SER GLY LYS CYS PHE PHE GLN GLY ASP HIS GLY PHE ASP SEQRES 35 A 827 ASN LYS VAL ASN SER MET GLN THR VAL PHE VAL GLY TYR SEQRES 36 A 827 GLY PRO THR PHE LYS TYR ARG THR LYS VAL PRO PRO PHE SEQRES 37 A 827 GLU ASN ILE GLU LEU TYR ASN VAL MET CYS ASP LEU LEU SEQRES 38 A 827 GLY LEU LYS PRO ALA PRO ASN ASN GLY THR HIS GLY SER SEQRES 39 A 827 LEU ASN HIS LEU LEU ARG THR ASN THR PHE ARG PRO THR SEQRES 40 A 827 MET PRO ASP GLU VAL SER ARG PRO ASN TYR PRO GLY ILE SEQRES 41 A 827 MET TYR LEU GLN SER GLU PHE ASP LEU GLY CYS THR CYS SEQRES 42 A 827 ASP ASP LYS VAL GLU PRO LYS ASN LYS LEU GLU GLU PHE SEQRES 43 A 827 ASN LYS ARG LEU HIS THR LYS GLY SER THR LYS GLU ARG SEQRES 44 A 827 HIS LEU LEU TYR GLY ARG PRO ALA VAL LEU TYR ARG THR SEQRES 45 A 827 SER TYR ASP ILE LEU TYR HIS THR ASP PHE GLU SER GLY SEQRES 46 A 827 TYR SER GLU ILE PHE LEU MET PRO LEU TRP THR SER TYR SEQRES 47 A 827 THR ILE SER LYS GLN ALA GLU VAL SER SER ILE PRO GLU SEQRES 48 A 827 HIS LEU THR ASN CYS VAL ARG PRO ASP VAL ARG VAL SER SEQRES 49 A 827 PRO GLY PHE SER GLN ASN CYS LEU ALA TYR LYS ASN ASP SEQRES 50 A 827 LYS GLN MET SER TYR GLY PHE LEU PHE PRO PRO TYR LEU SEQRES 51 A 827 SER SER SER PRO GLU ALA LYS TYR ASP ALA PHE LEU VAL SEQRES 52 A 827 THR ASN MET VAL PRO MET TYR PRO ALA PHE LYS ARG VAL SEQRES 53 A 827 TRP ALA TYR PHE GLN ARG VAL LEU VAL LYS LYS TYR ALA SEQRES 54 A 827 SER GLU ARG ASN GLY VAL ASN VAL ILE SER GLY PRO ILE SEQRES 55 A 827 PHE ASP TYR ASN TYR ASP GLY LEU ARG ASP THR GLU ASP SEQRES 56 A 827 GLU ILE LYS GLN TYR VAL GLU GLY SER SER ILE PRO VAL SEQRES 57 A 827 PRO THR HIS TYR TYR SER ILE ILE THR SER CYS LEU ASP SEQRES 58 A 827 PHE THR GLN PRO ALA ASP LYS CYS ASP GLY PRO LEU SER SEQRES 59 A 827 VAL SER SER PHE ILE LEU PRO HIS ARG PRO ASP ASN ASP SEQRES 60 A 827 GLU SER CYS ALA SER SER GLU ASP GLU SER LYS TRP VAL SEQRES 61 A 827 GLU GLU LEU MET LYS MET HIS THR ALA ARG VAL ARG ASP SEQRES 62 A 827 ILE GLU HIS LEU THR GLY LEU ASP PHE TYR ARG LYS THR SEQRES 63 A 827 SER ARG SER TYR SER GLU ILE LEU THR LEU LYS THR TYR SEQRES 64 A 827 LEU HIS THR TYR GLU SER GLU ILE HET NAG B 1 14 HET NAG B 2 14 HET ZN A 901 1 HET ZN A 902 1 HET TCI A 903 23 HET 5JK A 904 29 HET IOD A 905 1 HET IOD A 906 1 HET IOD A 907 1 HET IOD A 908 1 HET SCN A 909 3 HET GOL A 910 6 HET GOL A 911 6 HET GOL A 912 6 HET GOL A 913 6 HET GOL A 914 6 HET PO4 A 915 5 HET GOL A 916 6 HET SCN A 917 3 HET GOL A 918 6 HET GOL A 919 6 HET IOD A 920 1 HET IOD A 921 1 HET IOD A 922 1 HET IOD A 923 1 HET IOD A 924 1 HET IOD A 925 1 HET IOD A 926 1 HET IOD A 927 1 HET IOD A 928 1 HET IOD A 929 1 HET IOD A 930 1 HET IOD A 931 1 HET IOD A 932 1 HET IOD A 933 1 HET IOD A 934 1 HET CA A 935 1 HET CA A 936 1 HET NA A 937 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM TCI (6AR,10AR)-6,6,9-TRIMETHYL-3-PENTYL-6A,7,8,10A- HETNAM 2 TCI TETRAHYDRO-6H-BENZO[C]CHROMEN-1-OL HETNAM 5JK 7ALPHA-HYDROXYCHOLESTEROL HETNAM IOD IODIDE ION HETNAM SCN THIOCYANATE ION HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN TCI TETRAHYDROCANNABINOL HETSYN 5JK (3BETA,7ALPHA,9BETA,14BETA)-CHOLEST-5-ENE-3,7-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 TCI C21 H30 O2 FORMUL 6 5JK C27 H46 O2 FORMUL 7 IOD 19(I 1-) FORMUL 11 SCN 2(C N S 1-) FORMUL 12 GOL 8(C3 H8 O3) FORMUL 17 PO4 O4 P 3- FORMUL 37 CA 2(CA 2+) FORMUL 39 NA NA 1+ FORMUL 40 HOH *407(H2 O) HELIX 1 AA1 ASP A 88 CYS A 93 1 6 HELIX 2 AA2 ASP A 122 GLY A 127 1 6 HELIX 3 AA3 ASN A 132 GLY A 139 1 8 HELIX 4 AA4 HIS A 142 ASP A 146 5 5 HELIX 5 AA5 ARG A 174 GLY A 181 5 8 HELIX 6 AA6 MET A 185 GLY A 195 1 11 HELIX 7 AA7 LYS A 208 GLY A 219 1 12 HELIX 8 AA8 TYR A 221 GLY A 226 1 6 HELIX 9 AA9 ARG A 246 TRP A 254 5 9 HELIX 10 AB1 PRO A 258 GLN A 266 1 9 HELIX 11 AB2 PRO A 280 SER A 293 1 14 HELIX 12 AB3 ASP A 311 GLY A 318 1 8 HELIX 13 AB4 GLY A 321 GLU A 323 5 3 HELIX 14 AB5 MET A 324 LEU A 345 1 22 HELIX 15 AB6 SER A 373 TYR A 375 5 3 HELIX 16 AB7 PRO A 404 THR A 412 1 9 HELIX 17 AB8 GLN A 426 LEU A 428 5 3 HELIX 18 AB9 PRO A 429 HIS A 433 5 5 HELIX 19 AC1 LYS A 456 VAL A 460 5 5 HELIX 20 AC2 VAL A 480 GLN A 484 5 5 HELIX 21 AC3 GLU A 507 GLY A 517 1 11 HELIX 22 AC4 LEU A 530 LEU A 534 5 5 HELIX 23 AC5 LEU A 558 PHE A 562 5 5 HELIX 24 AC6 THR A 591 HIS A 595 5 5 HELIX 25 AC7 PRO A 645 THR A 649 5 5 HELIX 26 AC8 SER A 659 SER A 663 5 5 HELIX 27 AC9 ASN A 665 ASP A 672 1 8 HELIX 28 AD1 PRO A 682 SER A 686 5 5 HELIX 29 AD2 SER A 688 TYR A 693 1 6 HELIX 30 AD3 ASP A 694 THR A 699 5 6 HELIX 31 AD4 TYR A 705 VAL A 718 1 14 HELIX 32 AD5 VAL A 718 ASN A 728 1 11 HELIX 33 AD6 THR A 748 ILE A 752 5 5 HELIX 34 AD7 PRO A 780 CYS A 784 5 5 HELIX 35 AD8 ASP A 810 LYS A 813 5 4 HELIX 36 AD9 TRP A 814 HIS A 822 1 9 HELIX 37 AE1 ARG A 825 GLY A 834 1 10 HELIX 38 AE2 SER A 844 TYR A 854 1 11 SHEET 1 AA1 6 VAL A 302 PRO A 310 0 SHEET 2 AA1 6 LEU A 165 ASP A 171 1 N SER A 169 O PHE A 305 SHEET 3 AA1 6 ASN A 352 GLY A 357 1 O ILE A 354 N PHE A 168 SHEET 4 AA1 6 THR A 485 TYR A 490 -1 O TYR A 490 N VAL A 353 SHEET 5 AA1 6 THR A 196 ARG A 202 -1 N THR A 196 O GLY A 489 SHEET 6 AA1 6 THR A 498 LYS A 499 1 O THR A 498 N HIS A 197 SHEET 1 AA2 6 VAL A 302 PRO A 310 0 SHEET 2 AA2 6 LEU A 165 ASP A 171 1 N SER A 169 O PHE A 305 SHEET 3 AA2 6 ASN A 352 GLY A 357 1 O ILE A 354 N PHE A 168 SHEET 4 AA2 6 THR A 485 TYR A 490 -1 O TYR A 490 N VAL A 353 SHEET 5 AA2 6 THR A 196 ARG A 202 -1 N THR A 196 O GLY A 489 SHEET 6 AA2 6 PHE A 503 GLU A 504 1 O PHE A 503 N ARG A 202 SHEET 1 AA3 2 MET A 232 ASP A 234 0 SHEET 2 AA3 2 ALA A 239 PHE A 241 -1 O ALA A 239 N ASP A 234 SHEET 1 AA4 2 GLU A 362 ASP A 363 0 SHEET 2 AA4 2 GLY A 472 ASP A 473 -1 O ASP A 473 N GLU A 362 SHEET 1 AA5 2 THR A 369 PHE A 371 0 SHEET 2 AA5 2 HIS A 452 ALA A 454 1 O ALA A 454 N GLU A 370 SHEET 1 AA6 4 ILE A 382 VAL A 385 0 SHEET 2 AA6 4 LEU A 389 ALA A 394 -1 O ARG A 393 N THR A 383 SHEET 3 AA6 4 ILE A 443 VAL A 447 -1 O LEU A 445 N GLY A 390 SHEET 4 AA6 4 PHE A 420 MET A 424 -1 N TYR A 423 O HIS A 444 SHEET 1 AA7 2 ALA A 602 VAL A 603 0 SHEET 2 AA7 2 LEU A 835 ASP A 836 -1 O ASP A 836 N ALA A 602 SHEET 1 AA8 6 TYR A 609 TYR A 613 0 SHEET 2 AA8 6 GLU A 618 SER A 622 -1 O TYR A 621 N ASP A 610 SHEET 3 AA8 6 PRO A 628 ILE A 635 -1 O LEU A 629 N GLY A 620 SHEET 4 AA8 6 VAL A 730 ILE A 737 -1 O VAL A 732 N TYR A 633 SHEET 5 AA8 6 HIS A 766 CYS A 774 -1 O THR A 772 N ASN A 731 SHEET 6 AA8 6 LEU A 788 PRO A 796 -1 O LEU A 795 N TYR A 767 SHEET 1 AA9 2 SER A 676 PHE A 679 0 SHEET 2 AA9 2 MET A 701 MET A 704 -1 O VAL A 702 N GLY A 678 SSBOND 1 CYS A 58 CYS A 75 1555 1555 2.04 SSBOND 2 CYS A 62 CYS A 93 1555 1555 2.04 SSBOND 3 CYS A 73 CYS A 86 1555 1555 2.04 SSBOND 4 CYS A 79 CYS A 85 1555 1555 2.05 SSBOND 5 CYS A 102 CYS A 119 1555 1555 2.04 SSBOND 6 CYS A 107 CYS A 137 1555 1555 2.03 SSBOND 7 CYS A 117 CYS A 130 1555 1555 2.05 SSBOND 8 CYS A 123 CYS A 129 1555 1555 2.04 SSBOND 9 CYS A 148 CYS A 194 1555 1555 2.04 SSBOND 10 CYS A 156 CYS A 350 1555 1555 2.03 SSBOND 11 CYS A 366 CYS A 468 1555 1555 2.04 SSBOND 12 CYS A 413 CYS A 805 1555 1555 2.06 SSBOND 13 CYS A 566 CYS A 666 1555 1555 2.04 SSBOND 14 CYS A 568 CYS A 651 1555 1555 2.05 SSBOND 15 CYS A 774 CYS A 784 1555 1555 2.05 LINK ND2 ASN A 524 C1 NAG B 1 1555 1555 1.42 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.37 LINK OD1 ASP A 171 ZN ZN A 902 1555 1555 1.86 LINK OD2 ASP A 171 ZN ZN A 902 1555 1555 2.67 LINK OG1 THR A 209 ZN ZN A 902 1555 1555 1.93 LINK OD1BASN A 250 NA NA A 937 1555 1555 2.39 LINK OD1 ASP A 311 ZN ZN A 901 1555 1555 2.30 LINK OD2 ASP A 311 ZN ZN A 901 1555 1555 2.46 LINK NE2 HIS A 315 ZN ZN A 901 1555 1555 1.97 LINK OD2 ASP A 358 ZN ZN A 902 1555 1555 2.25 LINK NE2 HIS A 359 ZN ZN A 902 1555 1555 1.98 LINK O TYR A 669 CA CA A 936 1555 1555 2.69 LINK O ASP A 672 CA CA A 936 1555 1555 2.46 LINK O MET A 675 CA CA A 936 1555 1555 2.36 LINK OD1 ASP A 739 CA CA A 935 1555 1555 2.23 LINK OD1 ASN A 741 CA CA A 935 1555 1555 2.29 LINK OD1 ASP A 743 CA CA A 935 1555 1555 2.41 LINK O LEU A 745 CA CA A 935 1555 1555 2.28 LINK OD1 ASP A 747 CA CA A 935 1555 1555 2.26 LINK ZN ZN A 901 O2 PO4 A 915 1555 1555 2.42 LINK ZN ZN A 901 O3 PO4 A 915 1555 1555 2.18 LINK CA CA A 935 O HOH A1174 1555 1555 2.34 LINK NA NA A 937 O HOH A1185 1555 1555 3.08 CISPEP 1 TYR A 205 PRO A 206 0 -1.48 CISPEP 2 GLN A 309 PRO A 310 0 7.91 CRYST1 53.705 60.979 63.603 103.15 97.39 94.23 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018620 0.001377 0.002829 0.00000 SCALE2 0.000000 0.016444 0.004060 0.00000 SCALE3 0.000000 0.000000 0.016330 0.00000