HEADER BLOOD CLOTTING 12-JUL-21 7P4N TITLE NMR SOLUTION STRUCTURE OF THE C6 DOMAIN OF VON WILLEBRAND FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: VON WILLEBRAND FACTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VWF; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VWF, F8VWF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS VON WILLEBRAND FACTOR HAEMOSTASIS THROMBOSIS BLOOD COAGULATION KEYWDS 2 EXTRACELLULAR PROTEIN, BLOOD CLOTTING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.HENNIG,P.-C.CHEN,B.SIMON REVDAT 3 14-JUN-23 7P4N 1 REMARK REVDAT 2 07-DEC-22 7P4N 1 JRNL REVDAT 1 27-JUL-22 7P4N 0 JRNL AUTH P.C.CHEN,F.KUTZKI,A.MOJZISCH,B.SIMON,E.R.XU, JRNL AUTH 2 C.APONTE-SANTAMARIA,K.HORNY,C.JEFFRIES,R.SCHNEPPENHEIM, JRNL AUTH 3 M.WILMANNS,M.A.BREHM,F.GRATER,J.HENNIG JRNL TITL STRUCTURE AND DYNAMICS OF THE VON WILLEBRAND FACTOR C6 JRNL TITL 2 DOMAIN. JRNL REF J.STRUCT.BIOL. V. 214 07923 2022 JRNL REFN ESSN 1095-8657 JRNL PMID 36410652 JRNL DOI 10.1016/J.JSB.2022.107923 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, ARIA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7P4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292116625. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1.013 BAR REMARK 210 SAMPLE CONTENTS : 300 UM [U-13C; U-15N] VON REMARK 210 WILLEBRAND FACTOR C6 DOMAIN, 20 REMARK 210 MM NONE SODIUM PHOSPHATE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 2D 1H-13C REMARK 210 HSQC; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D H(CCO)NH; 3D C(CO)NH; REMARK 210 3D 1H-13C NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 6 -177.17 -174.79 REMARK 500 1 LEU A 60 -75.70 65.22 REMARK 500 2 LEU A 60 -67.26 66.28 REMARK 500 3 ALA A 6 -176.63 -172.87 REMARK 500 3 CYS A 29 -174.03 -170.12 REMARK 500 3 LEU A 60 -64.07 68.01 REMARK 500 4 SER A 2 98.78 -68.97 REMARK 500 4 ALA A 6 -174.04 -171.25 REMARK 500 4 ASP A 22 -2.37 76.70 REMARK 500 4 LEU A 60 -63.41 67.28 REMARK 500 5 CYS A 29 -174.05 -171.24 REMARK 500 5 GLU A 38 12.76 -66.30 REMARK 500 5 LEU A 60 -72.62 64.47 REMARK 500 6 ALA A 6 -176.68 -170.83 REMARK 500 6 CYS A 29 -174.04 -171.18 REMARK 500 6 LEU A 60 -66.22 67.33 REMARK 500 7 SER A 2 -59.38 -147.36 REMARK 500 7 ALA A 6 -176.58 -173.18 REMARK 500 7 LEU A 60 -58.92 68.10 REMARK 500 8 ALA A 6 -174.39 -171.56 REMARK 500 8 CYS A 29 -172.59 -171.65 REMARK 500 8 LEU A 60 -63.25 69.10 REMARK 500 9 CYS A 29 -174.52 -170.22 REMARK 500 9 LEU A 60 -71.30 67.34 REMARK 500 10 CYS A 29 -175.17 -170.33 REMARK 500 10 LEU A 60 -71.52 66.61 REMARK 500 11 ALA A 6 -178.83 -170.37 REMARK 500 11 CYS A 29 -171.60 -171.66 REMARK 500 11 LEU A 60 -65.33 68.07 REMARK 500 12 CYS A 29 -172.69 -171.94 REMARK 500 12 LEU A 60 -66.19 67.14 REMARK 500 13 LEU A 60 -67.02 67.59 REMARK 500 14 ALA A 6 -173.42 -171.09 REMARK 500 14 CYS A 29 -173.94 -170.06 REMARK 500 14 LEU A 60 -58.01 68.02 REMARK 500 15 ALA A 6 -174.03 -171.91 REMARK 500 15 CYS A 29 -174.05 -170.69 REMARK 500 15 LEU A 60 -57.59 68.21 REMARK 500 16 CYS A 29 -173.08 -171.26 REMARK 500 16 LEU A 60 -60.25 67.14 REMARK 500 17 ALA A 6 -179.62 -171.63 REMARK 500 17 LEU A 60 -62.58 70.51 REMARK 500 18 ALA A 6 -172.72 -171.86 REMARK 500 18 CYS A 29 -174.10 -170.14 REMARK 500 18 LEU A 60 -65.34 68.19 REMARK 500 19 LEU A 60 -71.97 68.06 REMARK 500 20 ALA A 6 -174.77 -170.34 REMARK 500 20 CYS A 29 -173.38 -170.21 REMARK 500 20 LEU A 60 -61.87 67.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34648 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF THE C6 DOMAIN OF VON WILLEBRAND FACTOR DBREF 7P4N A 5 78 UNP P04275 VWF_HUMAN 2647 2720 SEQADV 7P4N GLY A 1 UNP P04275 EXPRESSION TAG SEQADV 7P4N SER A 2 UNP P04275 EXPRESSION TAG SEQADV 7P4N MET A 3 UNP P04275 EXPRESSION TAG SEQADV 7P4N ALA A 4 UNP P04275 EXPRESSION TAG SEQRES 1 A 78 GLY SER MET ALA THR ALA CYS THR ILE GLN LEU ARG GLY SEQRES 2 A 78 GLY GLN ILE MET THR LEU LYS ARG ASP GLU THR LEU GLN SEQRES 3 A 78 ASP GLY CYS ASP THR HIS PHE CYS LYS VAL ASN GLU ARG SEQRES 4 A 78 GLY GLU TYR PHE TRP GLU LYS ARG VAL THR GLY CYS PRO SEQRES 5 A 78 PRO PHE ASP GLU HIS LYS CYS LEU ALA GLU GLY GLY LYS SEQRES 6 A 78 ILE MET LYS ILE PRO GLY THR CYS CYS ASP THR CYS GLU SHEET 1 AA1 2 CYS A 7 LEU A 11 0 SHEET 2 AA1 2 GLN A 15 LEU A 19 -1 O LEU A 19 N CYS A 7 SHEET 1 AA2 3 THR A 24 LEU A 25 0 SHEET 2 AA2 3 THR A 31 VAL A 36 -1 O HIS A 32 N LEU A 25 SHEET 3 AA2 3 TYR A 42 ARG A 47 -1 O ARG A 47 N THR A 31 SHEET 1 AA3 2 ILE A 66 LYS A 68 0 SHEET 2 AA3 2 ASP A 75 CYS A 77 -1 O THR A 76 N MET A 67 SSBOND 1 CYS A 7 CYS A 34 1555 1555 2.03 SSBOND 2 CYS A 29 CYS A 73 1555 1555 2.03 SSBOND 3 CYS A 51 CYS A 74 1555 1555 2.03 SSBOND 4 CYS A 59 CYS A 77 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1