HEADER HYDROLASE 12-JUL-21 7P4O
TITLE CRYSTAL STRUCTURE OF AUTOTAXIN AND 9(R)-DELTA6A,10A-THC
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY
COMPND 3 MEMBER 2;
COMPND 4 CHAIN: A;
COMPND 5 SYNONYM: E-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD;
COMPND 6 EC: 3.1.4.39;
COMPND 7 ENGINEERED: YES;
COMPND 8 OTHER_DETAILS: 9(R)-DELTA6A,10A-THC
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS;
SOURCE 3 ORGANISM_COMMON: NORWAY RAT;
SOURCE 4 ORGANISM_TAXID: 10116;
SOURCE 5 GENE: ENPP2, ATX, NPPS2;
SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606
KEYWDS 9(R)-DELTA6A, 10A-THC, INHIBITOR, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR M.C.EYMERY,A.A.MCCARTHY,J.HAUSMANN
REVDAT 4 13-NOV-24 7P4O 1 REMARK
REVDAT 3 31-JAN-24 7P4O 1 REMARK
REVDAT 2 25-JAN-23 7P4O 1 JRNL
REVDAT 1 28-DEC-22 7P4O 0
JRNL AUTH M.C.EYMERY,A.A.MCCARTHY,J.HAUSMANN
JRNL TITL LINKING MEDICINAL CANNABIS TO AUTOTAXIN-LYSOPHOSPHATIDIC
JRNL TITL 2 ACID SIGNALING.
JRNL REF LIFE SCI ALLIANCE V. 6 2023
JRNL REFN ESSN 2575-1077
JRNL PMID 36623871
JRNL DOI 10.26508/LSA.202201595
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH P.V.AFONINE
REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH
REMARK 1 TITL 2 PHENIX.REFINE
REMARK 1 REF ACTA CRYSTALLOGR. D V. 68 352 2012
REMARK 1 PMID 22505256
REMARK 1 DOI 10.1107/S0907444912001308
REMARK 2
REMARK 2 RESOLUTION. 1.69 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17_3644
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.29
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960
REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8
REMARK 3 NUMBER OF REFLECTIONS : 85240
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.172
REMARK 3 R VALUE (WORKING SET) : 0.171
REMARK 3 FREE R VALUE : 0.206
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.350
REMARK 3 FREE R VALUE TEST SET COUNT : 2003
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 60.2900 - 4.0700 0.91 5715 140 0.1532 0.1670
REMARK 3 2 4.0700 - 3.2300 0.91 5714 139 0.1476 0.2061
REMARK 3 3 3.2300 - 2.8200 0.92 5781 139 0.1795 0.2111
REMARK 3 4 2.8200 - 2.5600 0.95 5946 138 0.1848 0.2037
REMARK 3 5 2.5600 - 2.3800 0.97 6074 152 0.1876 0.2292
REMARK 3 6 2.3800 - 2.2400 0.97 6047 143 0.1797 0.2313
REMARK 3 7 2.2400 - 2.1300 0.97 6057 141 0.1745 0.2002
REMARK 3 8 2.1300 - 2.0300 0.96 6040 156 0.1814 0.2279
REMARK 3 9 2.0300 - 1.9600 0.96 6037 138 0.1792 0.2173
REMARK 3 10 1.9600 - 1.8900 0.96 6011 152 0.1875 0.2311
REMARK 3 11 1.8900 - 1.8300 0.96 6028 148 0.1864 0.2153
REMARK 3 12 1.8300 - 1.7800 0.95 5951 140 0.1941 0.2415
REMARK 3 13 1.7800 - 1.7300 0.94 5904 144 0.2065 0.2459
REMARK 3 14 1.7300 - 1.6900 0.94 5932 133 0.2177 0.2427
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.148
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.981
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 31.89
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.89
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.008 6523
REMARK 3 ANGLE : 0.896 8853
REMARK 3 CHIRALITY : 0.057 934
REMARK 3 PLANARITY : 0.006 1135
REMARK 3 DIHEDRAL : 9.251 900
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 516 )
REMARK 3 ORIGIN FOR THE GROUP (A): -0.2429 25.3245 2.2990
REMARK 3 T TENSOR
REMARK 3 T11: 0.1584 T22: 0.1553
REMARK 3 T33: 0.1449 T12: 0.0149
REMARK 3 T13: 0.0032 T23: 0.0167
REMARK 3 L TENSOR
REMARK 3 L11: 0.6805 L22: 1.4779
REMARK 3 L33: 1.0997 L12: 0.0440
REMARK 3 L13: 0.2100 L23: 0.3529
REMARK 3 S TENSOR
REMARK 3 S11: 0.0036 S12: -0.1072 S13: -0.0119
REMARK 3 S21: 0.2725 S22: 0.0506 S23: -0.0707
REMARK 3 S31: 0.0254 S32: 0.0085 S33: -0.0432
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 517 THROUGH 597 )
REMARK 3 ORIGIN FOR THE GROUP (A): -17.5257 34.7444 -31.3216
REMARK 3 T TENSOR
REMARK 3 T11: 0.3612 T22: 0.2742
REMARK 3 T33: 0.2379 T12: -0.0300
REMARK 3 T13: -0.0252 T23: 0.0623
REMARK 3 L TENSOR
REMARK 3 L11: 0.8542 L22: 0.5832
REMARK 3 L33: 0.7285 L12: -0.0648
REMARK 3 L13: 0.4477 L23: -0.1162
REMARK 3 S TENSOR
REMARK 3 S11: -0.1842 S12: 0.2648 S13: 0.2266
REMARK 3 S21: -0.3196 S22: 0.0564 S23: 0.1422
REMARK 3 S31: -0.3295 S32: 0.0084 S33: 0.1350
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 598 THROUGH 858 )
REMARK 3 ORIGIN FOR THE GROUP (A): -22.9125 21.1598 -31.4141
REMARK 3 T TENSOR
REMARK 3 T11: 0.1408 T22: 0.1852
REMARK 3 T33: 0.1288 T12: -0.0216
REMARK 3 T13: -0.0045 T23: 0.0083
REMARK 3 L TENSOR
REMARK 3 L11: 1.1732 L22: 1.4289
REMARK 3 L33: 1.2192 L12: 0.0052
REMARK 3 L13: 0.3693 L23: 0.2711
REMARK 3 S TENSOR
REMARK 3 S11: 0.0018 S12: 0.1925 S13: -0.0323
REMARK 3 S21: -0.1651 S22: 0.0084 S23: 0.0782
REMARK 3 S31: -0.0018 S32: 0.0191 S33: -0.0107
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7P4O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-21.
REMARK 100 THE DEPOSITION ID IS D_1292116993.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 29-JUN-20
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY
REMARK 200 BEAMLINE : P13 (MX1)
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.99988
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : POINTLESS, AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85240
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690
REMARK 200 RESOLUTION RANGE LOW (A) : 60.290
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8
REMARK 200 DATA REDUNDANCY : 3.500
REMARK 200 R MERGE (I) : 0.11460
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.5300
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75
REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 1.03700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: 2XR9
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 43.44
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 18-22% (M/V) PEG3350, 0.1-0.3 M NH4I
REMARK 280 AND 0.3 M NASCN RATX: 3MG/ML, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 303K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 36
REMARK 465 GLU A 37
REMARK 465 TRP A 38
REMARK 465 ASP A 39
REMARK 465 GLU A 40
REMARK 465 GLY A 41
REMARK 465 PRO A 42
REMARK 465 PRO A 43
REMARK 465 THR A 44
REMARK 465 VAL A 45
REMARK 465 LEU A 46
REMARK 465 SER A 47
REMARK 465 ASP A 48
REMARK 465 SER A 49
REMARK 465 PRO A 50
REMARK 465 TRP A 51
REMARK 465 THR A 52
REMARK 465 ASN A 53
REMARK 465 THR A 54
REMARK 465 SER A 55
REMARK 465 SER A 396
REMARK 465 ILE A 397
REMARK 465 ASN A 398
REMARK 465 ASN A 399
REMARK 465 SER A 400
REMARK 465 LYS A 401
REMARK 465 ASP A 570
REMARK 465 LYS A 571
REMARK 465 VAL A 572
REMARK 465 GLU A 573
REMARK 465 PRO A 574
REMARK 465 LYS A 575
REMARK 465 ASN A 576
REMARK 465 LYS A 577
REMARK 465 LEU A 578
REMARK 465 GLU A 579
REMARK 465 GLU A 580
REMARK 465 PHE A 581
REMARK 465 ASN A 582
REMARK 465 LYS A 583
REMARK 465 ARG A 584
REMARK 465 LEU A 585
REMARK 465 HIS A 586
REMARK 465 THR A 587
REMARK 465 LYS A 588
REMARK 465 GLY A 589
REMARK 465 SER A 590
REMARK 465 GLU A 859
REMARK 465 SER A 860
REMARK 465 GLU A 861
REMARK 465 ILE A 862
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLN A 66 CG CD OE1 NE2
REMARK 470 GLU A 67 CG CD OE1 OE2
REMARK 470 ASP A 105 CG OD1 OD2
REMARK 470 LYS A 405 CG CD CE NZ
REMARK 470 ASP A 563 CG OD1 OD2
REMARK 470 THR A 591 OG1
REMARK 470 GLU A 749 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O PRO A 520 O HOH A 1001 1.60
REMARK 500 O HOH A 1314 O HOH A 1339 2.02
REMARK 500 O HOH A 1421 O HOH A 1431 2.05
REMARK 500 O HOH A 1347 O HOH A 1442 2.06
REMARK 500 O HOH A 1049 O HOH A 1337 2.14
REMARK 500 O4 NAG C 1 O5 NAG C 2 2.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OD1 ASN A 374 OG1 THR A 536 1545 2.06
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLU A 109 155.56 -49.98
REMARK 500 ARG A 368 71.42 -107.13
REMARK 500 ASP A 417 37.54 -99.69
REMARK 500 ALA A 435 -33.50 -150.42
REMARK 500 ARG A 450 2.61 80.95
REMARK 500 ASP A 477 127.25 -30.57
REMARK 500 THR A 485 -166.73 -128.71
REMARK 500 ASP A 563 -71.49 -53.49
REMARK 500 LEU A 564 0.39 -152.30
REMARK 500 LYS A 592 27.13 -75.81
REMARK 500 SER A 676 -156.89 -115.39
REMARK 500 TRP A 814 -21.74 -150.73
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 GLY A 181 SER A 182 149.44
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 903 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 171 OD1
REMARK 620 2 THR A 209 OG1 122.7
REMARK 620 3 ASP A 358 OD2 98.7 109.9
REMARK 620 4 HIS A 359 NE2 108.8 111.2 103.1
REMARK 620 5 HOH A1010 O 80.3 63.7 170.5 86.1
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 902 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 311 OD1
REMARK 620 2 ASP A 311 OD2 55.2
REMARK 620 3 HIS A 315 NE2 100.3 94.7
REMARK 620 4 HIS A 474 NE2 94.5 148.3 100.3
REMARK 620 5 HOH A1010 O 79.9 74.9 167.4 92.2
REMARK 620 6 HOH A1363 O 156.7 102.5 87.4 105.9 87.9
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 907 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 739 OD1
REMARK 620 2 ASN A 741 OD1 85.6
REMARK 620 3 ASP A 743 OD1 83.8 83.0
REMARK 620 4 LEU A 745 O 90.2 168.1 85.5
REMARK 620 5 ASP A 747 OD1 98.4 87.4 169.9 104.3
REMARK 620 6 HOH A1230 O 168.4 87.5 86.1 94.7 90.5
REMARK 620 N 1 2 3 4 5
DBREF 7P4O A 36 862 UNP Q64610 ENPP2_RAT 36 862
SEQADV 7P4O ALA A 410 UNP Q64610 ASN 410 ENGINEERED MUTATION
SEQADV 7P4O PHE A 581 UNP Q64610 LEU 581 ENGINEERED MUTATION
SEQADV 7P4O THR A 591 UNP Q64610 ARG 591 ENGINEERED MUTATION
SEQADV 7P4O ALA A 806 UNP Q64610 ASN 806 ENGINEERED MUTATION
SEQRES 1 A 827 ALA GLU TRP ASP GLU GLY PRO PRO THR VAL LEU SER ASP
SEQRES 2 A 827 SER PRO TRP THR ASN THR SER GLY SER CYS LYS GLY ARG
SEQRES 3 A 827 CYS PHE GLU LEU GLN GLU VAL GLY PRO PRO ASP CYS ARG
SEQRES 4 A 827 CYS ASP ASN LEU CYS LYS SER TYR SER SER CYS CYS HIS
SEQRES 5 A 827 ASP PHE ASP GLU LEU CYS LEU LYS THR ALA ARG GLY TRP
SEQRES 6 A 827 GLU CYS THR LYS ASP ARG CYS GLY GLU VAL ARG ASN GLU
SEQRES 7 A 827 GLU ASN ALA CYS HIS CYS SER GLU ASP CYS LEU SER ARG
SEQRES 8 A 827 GLY ASP CYS CYS THR ASN TYR GLN VAL VAL CYS LYS GLY
SEQRES 9 A 827 GLU SER HIS TRP VAL ASP ASP ASP CYS GLU GLU ILE LYS
SEQRES 10 A 827 VAL PRO GLU CYS PRO ALA GLY PHE VAL ARG PRO PRO LEU
SEQRES 11 A 827 ILE ILE PHE SER VAL ASP GLY PHE ARG ALA SER TYR MET
SEQRES 12 A 827 LYS LYS GLY SER LYS VAL MET PRO ASN ILE GLU LYS LEU
SEQRES 13 A 827 ARG SER CYS GLY THR HIS ALA PRO TYR MET ARG PRO VAL
SEQRES 14 A 827 TYR PRO THR LYS THR PHE PRO ASN LEU TYR THR LEU ALA
SEQRES 15 A 827 THR GLY LEU TYR PRO GLU SER HIS GLY ILE VAL GLY ASN
SEQRES 16 A 827 SER MET TYR ASP PRO VAL PHE ASP ALA SER PHE HIS LEU
SEQRES 17 A 827 ARG GLY ARG GLU LYS PHE ASN HIS ARG TRP TRP GLY GLY
SEQRES 18 A 827 GLN PRO LEU TRP ILE THR ALA THR LYS GLN GLY VAL ARG
SEQRES 19 A 827 ALA GLY THR PHE PHE TRP SER VAL SER ILE PRO HIS GLU
SEQRES 20 A 827 ARG ARG ILE LEU THR ILE LEU GLN TRP LEU SER LEU PRO
SEQRES 21 A 827 ASP ASN GLU ARG PRO SER VAL TYR ALA PHE TYR SER GLU
SEQRES 22 A 827 GLN PRO ASP PHE SER GLY HIS LYS TYR GLY PRO PHE GLY
SEQRES 23 A 827 PRO GLU MET THR ASN PRO LEU ARG GLU ILE ASP LYS THR
SEQRES 24 A 827 VAL GLY GLN LEU MET ASP GLY LEU LYS GLN LEU ARG LEU
SEQRES 25 A 827 HIS ARG CYS VAL ASN VAL ILE PHE VAL GLY ASP HIS GLY
SEQRES 26 A 827 MET GLU ASP VAL THR CYS ASP ARG THR GLU PHE LEU SER
SEQRES 27 A 827 ASN TYR LEU THR ASN VAL ASP ASP ILE THR LEU VAL PRO
SEQRES 28 A 827 GLY THR LEU GLY ARG ILE ARG ALA LYS SER ILE ASN ASN
SEQRES 29 A 827 SER LYS TYR ASP PRO LYS THR ILE ILE ALA ALA LEU THR
SEQRES 30 A 827 CYS LYS LYS PRO ASP GLN HIS PHE LYS PRO TYR MET LYS
SEQRES 31 A 827 GLN HIS LEU PRO LYS ARG LEU HIS TYR ALA ASN ASN ARG
SEQRES 32 A 827 ARG ILE GLU ASP ILE HIS LEU LEU VAL ASP ARG ARG TRP
SEQRES 33 A 827 HIS VAL ALA ARG LYS PRO LEU ASP VAL TYR LYS LYS PRO
SEQRES 34 A 827 SER GLY LYS CYS PHE PHE GLN GLY ASP HIS GLY PHE ASP
SEQRES 35 A 827 ASN LYS VAL ASN SER MET GLN THR VAL PHE VAL GLY TYR
SEQRES 36 A 827 GLY PRO THR PHE LYS TYR ARG THR LYS VAL PRO PRO PHE
SEQRES 37 A 827 GLU ASN ILE GLU LEU TYR ASN VAL MET CYS ASP LEU LEU
SEQRES 38 A 827 GLY LEU LYS PRO ALA PRO ASN ASN GLY THR HIS GLY SER
SEQRES 39 A 827 LEU ASN HIS LEU LEU ARG THR ASN THR PHE ARG PRO THR
SEQRES 40 A 827 MET PRO ASP GLU VAL SER ARG PRO ASN TYR PRO GLY ILE
SEQRES 41 A 827 MET TYR LEU GLN SER GLU PHE ASP LEU GLY CYS THR CYS
SEQRES 42 A 827 ASP ASP LYS VAL GLU PRO LYS ASN LYS LEU GLU GLU PHE
SEQRES 43 A 827 ASN LYS ARG LEU HIS THR LYS GLY SER THR LYS GLU ARG
SEQRES 44 A 827 HIS LEU LEU TYR GLY ARG PRO ALA VAL LEU TYR ARG THR
SEQRES 45 A 827 SER TYR ASP ILE LEU TYR HIS THR ASP PHE GLU SER GLY
SEQRES 46 A 827 TYR SER GLU ILE PHE LEU MET PRO LEU TRP THR SER TYR
SEQRES 47 A 827 THR ILE SER LYS GLN ALA GLU VAL SER SER ILE PRO GLU
SEQRES 48 A 827 HIS LEU THR ASN CYS VAL ARG PRO ASP VAL ARG VAL SER
SEQRES 49 A 827 PRO GLY PHE SER GLN ASN CYS LEU ALA TYR LYS ASN ASP
SEQRES 50 A 827 LYS GLN MET SER TYR GLY PHE LEU PHE PRO PRO TYR LEU
SEQRES 51 A 827 SER SER SER PRO GLU ALA LYS TYR ASP ALA PHE LEU VAL
SEQRES 52 A 827 THR ASN MET VAL PRO MET TYR PRO ALA PHE LYS ARG VAL
SEQRES 53 A 827 TRP ALA TYR PHE GLN ARG VAL LEU VAL LYS LYS TYR ALA
SEQRES 54 A 827 SER GLU ARG ASN GLY VAL ASN VAL ILE SER GLY PRO ILE
SEQRES 55 A 827 PHE ASP TYR ASN TYR ASP GLY LEU ARG ASP THR GLU ASP
SEQRES 56 A 827 GLU ILE LYS GLN TYR VAL GLU GLY SER SER ILE PRO VAL
SEQRES 57 A 827 PRO THR HIS TYR TYR SER ILE ILE THR SER CYS LEU ASP
SEQRES 58 A 827 PHE THR GLN PRO ALA ASP LYS CYS ASP GLY PRO LEU SER
SEQRES 59 A 827 VAL SER SER PHE ILE LEU PRO HIS ARG PRO ASP ASN ASP
SEQRES 60 A 827 GLU SER CYS ALA SER SER GLU ASP GLU SER LYS TRP VAL
SEQRES 61 A 827 GLU GLU LEU MET LYS MET HIS THR ALA ARG VAL ARG ASP
SEQRES 62 A 827 ILE GLU HIS LEU THR GLY LEU ASP PHE TYR ARG LYS THR
SEQRES 63 A 827 SER ARG SER TYR SER GLU ILE LEU THR LEU LYS THR TYR
SEQRES 64 A 827 LEU HIS THR TYR GLU SER GLU ILE
HET NAG C 1 26
HET NAG C 2 27
HET 5JK A 901 75
HET ZN A 902 1
HET ZN A 903 1
HET 5K9 A 904 53
HET SCN A 905 3
HET SCN A 906 3
HET CA A 907 1
HET GOL A 908 14
HET GOL A 909 14
HET IOD A 910 1
HET IOD A 911 1
HET IOD A 912 1
HET IOD A 913 1
HET IOD A 914 1
HET IOD A 915 1
HET IOD A 916 1
HET IOD A 917 1
HET IOD A 918 1
HET IOD A 919 1
HET IOD A 920 1
HET IOD A 921 1
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM 5JK 7ALPHA-HYDROXYCHOLESTEROL
HETNAM ZN ZINC ION
HETNAM 5K9 (9~{R},10~{A}~{S})-6,6,9-TRIMETHYL-3-PENTYL-6~{A},7,8,
HETNAM 2 5K9 9,10,10~{A}-HEXAHYDROBENZO[C]CHROMEN-1-OL
HETNAM SCN THIOCYANATE ION
HETNAM CA CALCIUM ION
HETNAM GOL GLYCEROL
HETNAM IOD IODIDE ION
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
HETSYN 5JK (3BETA,7ALPHA,9BETA,14BETA)-CHOLEST-5-ENE-3,7-DIOL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 NAG 2(C8 H15 N O6)
FORMUL 3 5JK C27 H46 O2
FORMUL 4 ZN 2(ZN 2+)
FORMUL 6 5K9 C21 H32 O2
FORMUL 7 SCN 2(C N S 1-)
FORMUL 9 CA CA 2+
FORMUL 10 GOL 2(C3 H8 O3)
FORMUL 12 IOD 12(I 1-)
FORMUL 24 HOH *461(H2 O)
HELIX 1 AA1 ASP A 88 CYS A 93 1 6
HELIX 2 AA2 THR A 103 CYS A 107 5 5
HELIX 3 AA3 ASP A 122 GLY A 127 1 6
HELIX 4 AA4 ASN A 132 GLY A 139 1 8
HELIX 5 AA5 HIS A 142 ASP A 146 5 5
HELIX 6 AA6 ARG A 174 LYS A 180 5 7
HELIX 7 AA7 MET A 185 GLY A 195 1 11
HELIX 8 AA8 LYS A 208 GLY A 219 1 12
HELIX 9 AA9 TYR A 221 GLY A 226 1 6
HELIX 10 AB1 ARG A 246 TRP A 254 5 9
HELIX 11 AB2 PRO A 258 GLN A 266 1 9
HELIX 12 AB3 PRO A 280 SER A 293 1 14
HELIX 13 AB4 ASP A 311 GLY A 318 1 8
HELIX 14 AB5 GLY A 321 GLU A 323 5 3
HELIX 15 AB6 MET A 324 LEU A 345 1 22
HELIX 16 AB7 SER A 373 TYR A 375 5 3
HELIX 17 AB8 ASN A 378 ASP A 380 5 3
HELIX 18 AB9 ASP A 403 LEU A 411 1 9
HELIX 19 AC1 GLN A 426 LEU A 428 5 3
HELIX 20 AC2 PRO A 429 HIS A 433 5 5
HELIX 21 AC3 LYS A 456 VAL A 460 5 5
HELIX 22 AC4 VAL A 480 GLN A 484 5 5
HELIX 23 AC5 GLU A 507 LEU A 516 1 10
HELIX 24 AC6 LEU A 530 LEU A 534 5 5
HELIX 25 AC7 LEU A 558 PHE A 562 5 5
HELIX 26 AC8 PRO A 645 THR A 649 5 5
HELIX 27 AC9 SER A 659 SER A 663 5 5
HELIX 28 AD1 ASN A 665 ASP A 672 1 8
HELIX 29 AD2 PRO A 682 SER A 686 5 5
HELIX 30 AD3 SER A 688 PHE A 696 1 9
HELIX 31 AD4 LEU A 697 THR A 699 5 3
HELIX 32 AD5 TYR A 705 VAL A 718 1 14
HELIX 33 AD6 VAL A 718 ASN A 728 1 11
HELIX 34 AD7 THR A 748 ILE A 752 5 5
HELIX 35 AD8 PRO A 780 CYS A 784 5 5
HELIX 36 AD9 ASP A 810 LYS A 813 5 4
HELIX 37 AE1 TRP A 814 HIS A 822 1 9
HELIX 38 AE2 ARG A 825 GLY A 834 1 10
HELIX 39 AE3 SER A 844 TYR A 854 1 11
SHEET 1 AA1 6 VAL A 302 PRO A 310 0
SHEET 2 AA1 6 LEU A 165 ASP A 171 1 N ILE A 167 O PHE A 305
SHEET 3 AA1 6 ASN A 352 GLY A 357 1 O ILE A 354 N PHE A 168
SHEET 4 AA1 6 PHE A 487 TYR A 490 -1 O TYR A 490 N VAL A 353
SHEET 5 AA1 6 THR A 196 HIS A 197 -1 N THR A 196 O GLY A 489
SHEET 6 AA1 6 THR A 498 LYS A 499 1 O THR A 498 N HIS A 197
SHEET 1 AA2 2 MET A 201 ARG A 202 0
SHEET 2 AA2 2 PHE A 503 GLU A 504 1 O PHE A 503 N ARG A 202
SHEET 1 AA3 2 MET A 232 ASP A 234 0
SHEET 2 AA3 2 ALA A 239 PHE A 241 -1 O PHE A 241 N MET A 232
SHEET 1 AA4 2 GLU A 362 ASP A 363 0
SHEET 2 AA4 2 GLY A 472 ASP A 473 -1 O ASP A 473 N GLU A 362
SHEET 1 AA5 2 THR A 369 PHE A 371 0
SHEET 2 AA5 2 HIS A 452 ALA A 454 1 O ALA A 454 N GLU A 370
SHEET 1 AA6 4 ILE A 382 VAL A 385 0
SHEET 2 AA6 4 LEU A 389 ALA A 394 -1 O ARG A 393 N THR A 383
SHEET 3 AA6 4 ILE A 443 VAL A 447 -1 O LEU A 445 N GLY A 390
SHEET 4 AA6 4 PHE A 420 MET A 424 -1 N TYR A 423 O HIS A 444
SHEET 1 AA7 2 ALA A 602 VAL A 603 0
SHEET 2 AA7 2 LEU A 835 ASP A 836 -1 O ASP A 836 N ALA A 602
SHEET 1 AA8 7 TYR A 609 TYR A 613 0
SHEET 2 AA8 7 GLU A 618 SER A 622 -1 O TYR A 621 N ASP A 610
SHEET 3 AA8 7 PRO A 628 ILE A 635 -1 O SER A 632 N GLU A 618
SHEET 4 AA8 7 VAL A 730 ILE A 737 -1 O VAL A 732 N TYR A 633
SHEET 5 AA8 7 HIS A 766 CYS A 774 -1 O THR A 772 N ASN A 731
SHEET 6 AA8 7 LEU A 788 PRO A 796 -1 O SER A 791 N ILE A 771
SHEET 7 AA8 7 THR A 823 ALA A 824 -1 O ALA A 824 N SER A 792
SHEET 1 AA9 2 SER A 676 PHE A 679 0
SHEET 2 AA9 2 MET A 701 MET A 704 -1 O VAL A 702 N GLY A 678
SSBOND 1 CYS A 58 CYS A 75 1555 1555 2.03
SSBOND 2 CYS A 62 CYS A 93 1555 1555 2.04
SSBOND 3 CYS A 73 CYS A 86 1555 1555 2.04
SSBOND 4 CYS A 79 CYS A 85 1555 1555 2.05
SSBOND 5 CYS A 102 CYS A 119 1555 1555 2.03
SSBOND 6 CYS A 107 CYS A 137 1555 1555 2.04
SSBOND 7 CYS A 117 CYS A 130 1555 1555 2.04
SSBOND 8 CYS A 123 CYS A 129 1555 1555 2.03
SSBOND 9 CYS A 148 CYS A 194 1555 1555 2.03
SSBOND 10 CYS A 156 CYS A 350 1555 1555 2.05
SSBOND 11 CYS A 366 CYS A 468 1555 1555 2.04
SSBOND 12 CYS A 413 CYS A 805 1555 1555 2.05
SSBOND 13 CYS A 566 CYS A 666 1555 1555 2.04
SSBOND 14 CYS A 568 CYS A 651 1555 1555 2.03
SSBOND 15 CYS A 774 CYS A 784 1555 1555 2.05
LINK ND2 ASN A 524 C1 NAG C 1 1555 1555 1.43
LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.37
LINK OD1 ASP A 171 ZN ZN A 903 1555 1555 1.80
LINK OG1 THR A 209 ZN ZN A 903 1555 1555 1.96
LINK OD1 ASP A 311 ZN ZN A 902 1555 1555 2.25
LINK OD2 ASP A 311 ZN ZN A 902 1555 1555 2.44
LINK NE2 HIS A 315 ZN ZN A 902 1555 1555 2.03
LINK OD2 ASP A 358 ZN ZN A 903 1555 1555 2.12
LINK NE2 HIS A 359 ZN ZN A 903 1555 1555 2.03
LINK NE2 HIS A 474 ZN ZN A 902 1555 1555 2.03
LINK OD1 ASP A 739 CA CA A 907 1555 1555 2.25
LINK OD1 ASN A 741 CA CA A 907 1555 1555 2.33
LINK OD1 ASP A 743 CA CA A 907 1555 1555 2.39
LINK O LEU A 745 CA CA A 907 1555 1555 2.35
LINK OD1 ASP A 747 CA CA A 907 1555 1555 2.36
LINK ZN ZN A 902 O HOH A1010 1555 1555 2.37
LINK ZN ZN A 902 O HOH A1363 1555 1555 2.62
LINK ZN ZN A 903 O HOH A1010 1555 1555 2.46
LINK CA CA A 907 O HOH A1230 1555 1555 2.36
CISPEP 1 PRO A 70 PRO A 71 0 -0.28
CISPEP 2 TYR A 205 PRO A 206 0 -4.88
CISPEP 3 GLN A 309 PRO A 310 0 5.57
CISPEP 4 ASP A 563 LEU A 564 0 -12.55
CRYST1 53.841 62.361 64.356 103.70 98.37 93.44 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018573 0.001116 0.003108 0.00000
SCALE2 0.000000 0.016065 0.004124 0.00000
SCALE3 0.000000 0.000000 0.016215 0.00000