HEADER SIGNALING PROTEIN 13-JUL-21 7P52 TITLE GLNK1 FROM METHANOCALDOCOCCUS JANNASCHII WITH MG-ATP AND 2- TITLE 2 OXOGLUTARATE AT A RESOLUTION OF 1.2 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN REGULATORY PROTEIN GLNK1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE FORMYLATION ON THE INITIAL METHIONINE WAS COMPND 6 MODELLED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII DSM 2661; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 CELL_LINE: /; SOURCE 5 ATCC: /; SOURCE 6 ORGAN: /; SOURCE 7 TISSUE: /; SOURCE 8 CELL: /; SOURCE 9 GENE: GLNK1, MJ0059; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_ATCC_NUMBER: /; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET-24B (+) KEYWDS PII-FAMILY, METHANOCOCCALES, METHANOGENIC ARCHAEA, HYPERTHERMOPHILE, KEYWDS 2 HYDROGENOTROPHIC, NITROGEN METABOLISM, PROTEIN REGULATION, KEYWDS 3 INHIBITOR, CONFORMATIONAL CHANGE, T-LOOP, ATP, 2-OXOGLUTARATE, KEYWDS 4 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.-C.MUELLER,T.WAGNER REVDAT 2 31-JAN-24 7P52 1 REMARK REVDAT 1 06-OCT-21 7P52 0 JRNL AUTH M.C.MULLER,T.WAGNER JRNL TITL THE OXOGLUTARATE BINDING SITE AND REGULATORY MECHANISM ARE JRNL TITL 2 CONSERVED IN AMMONIUM TRANSPORTER INHIBITORS GLNKS FROM JRNL TITL 3 METHANOCOCCALES . JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 34445335 JRNL DOI 10.3390/IJMS22168631 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.7 REMARK 3 NUMBER OF REFLECTIONS : 31668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5300 - 2.6800 0.94 3886 230 0.1290 0.1467 REMARK 3 2 2.6500 - 2.1200 0.92 3702 173 0.1195 0.1395 REMARK 3 3 2.1200 - 1.8500 0.80 3225 169 0.1153 0.1470 REMARK 3 4 1.8500 - 1.6800 1.00 4021 223 0.1291 0.1513 REMARK 3 5 1.6800 - 1.5600 0.95 3831 206 0.1333 0.1742 REMARK 3 6 1.5600 - 1.4700 0.49 1989 95 0.1531 0.2078 REMARK 3 7 1.4700 - 1.4000 0.64 2588 115 0.1499 0.1837 REMARK 3 8 1.4000 - 1.3300 0.53 2150 100 0.1740 0.2162 REMARK 3 9 1.3300 - 1.2800 0.45 1787 92 0.1974 0.2361 REMARK 3 10 1.2800 - 1.2400 0.39 1540 80 0.1967 0.2331 REMARK 3 11 1.2400 - 1.2000 0.35 1399 67 0.2099 0.2605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE LAST REFINEMENT STEPS WERE CARRIED REMARK 3 OUT WITH HYDROGENS IN RIDING MODE REMARK 4 REMARK 4 7P52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292116965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31673 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 44.527 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 1.20900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2J9D REMARK 200 REMARK 200 REMARK: TRANSPARENT CUBE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GLNK1 WAS CRYSTALLIZED AT 11.2 MG/ML REMARK 280 IN 25 MM TRIS/HCL PH 7.6, 10% GLYCEROL, 2MM DITHIOTHREITOL AND REMARK 280 500MM NACL ON 96-WELL MRC 2-DROP CRYSTALLIZATION PLATES IN REMARK 280 POLYSTYRENE (SWISSCI). GLNK1 WAS COCRYSTALLIZED WITH 2 MM ATP, 2 REMARK 280 MM 2-OXOGLUTARATE AND 2 MM MGCL2. DROP OF 0.6 UL OF PROTEIN REMARK 280 SAMPLE WAS MIXED WITH 0.6 UL OF THE CRYSTALLIZATION SOLUTION. REMARK 280 THE RESERVOIR CONTAINED 90 UL OF THE FOLLOWING CRYSTALLIZATION REMARK 280 SOLUTION: 20% PEG 3,350, 100 MM BIS-TRIS PROPANE PH 8.5 AND 200 REMARK 280 MM SODIUM NITRATE., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.52650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.70739 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.68633 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.52650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.70739 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.68633 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.52650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.70739 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.68633 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.52650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.70739 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.68633 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.52650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.70739 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 32.68633 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.52650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.70739 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.68633 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.41477 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 65.37267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.41477 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 65.37267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.41477 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 65.37267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.41477 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 65.37267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.41477 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 65.37267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.41477 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 65.37267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 N NO3 A 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 563 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 570 LIES ON A SPECIAL POSITION. REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 577 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 578 DISTANCE = 6.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 39 OE1 REMARK 620 2 ATP A 301 O1G 94.8 REMARK 620 3 ATP A 301 O1B 97.6 87.3 REMARK 620 4 ATP A 301 O1A 172.5 91.3 87.1 REMARK 620 5 AKG A 302 O2 82.1 174.9 97.0 91.6 REMARK 620 6 AKG A 302 O5 86.2 98.0 173.2 88.5 77.8 REMARK 620 N 1 2 3 4 5 DBREF 7P52 A 1 112 UNP Q60381 GLNK1_METJA 1 112 SEQRES 1 A 112 FME LYS LYS VAL GLU ALA ILE ILE ARG PRO GLU LYS LEU SEQRES 2 A 112 GLU ILE VAL LYS LYS ALA LEU SER ASP ALA GLY TYR VAL SEQRES 3 A 112 GLY MET THR VAL SER GLU VAL LYS GLY ARG GLY VAL GLN SEQRES 4 A 112 GLY GLY ILE VAL GLU ARG TYR ARG GLY ARG GLU TYR ILE SEQRES 5 A 112 VAL ASP LEU ILE PRO LYS VAL LYS ILE GLU LEU VAL VAL SEQRES 6 A 112 LYS GLU GLU ASP VAL ASP ASN VAL ILE ASP ILE ILE CYS SEQRES 7 A 112 GLU ASN ALA ARG THR GLY ASN PRO GLY ASP GLY LYS ILE SEQRES 8 A 112 PHE VAL ILE PRO VAL GLU ARG VAL VAL ARG VAL ARG THR SEQRES 9 A 112 LYS GLU GLU GLY LYS GLU ALA LEU MODRES 7P52 FME A 1 MET MODIFIED RESIDUE HET FME A 1 20 HET ATP A 301 31 HET AKG A 302 10 HET GOL A 303 6 HET NO3 A 304 4 HET MG A 305 1 HETNAM FME N-FORMYLMETHIONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM AKG 2-OXOGLUTARIC ACID HETNAM GOL GLYCEROL HETNAM NO3 NITRATE ION HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 FME C6 H11 N O3 S FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 AKG C5 H6 O5 FORMUL 4 GOL C3 H8 O3 FORMUL 5 NO3 N O3 1- FORMUL 6 MG MG 2+ FORMUL 7 HOH *178(H2 O) HELIX 1 AA1 LYS A 12 ALA A 23 1 12 HELIX 2 AA2 LYS A 66 GLU A 68 5 3 HELIX 3 AA3 ASP A 69 ARG A 82 1 14 HELIX 4 AA4 GLU A 107 LEU A 112 5 6 SHEET 1 AA1 4 THR A 29 GLY A 35 0 SHEET 2 AA1 4 ILE A 56 VAL A 65 -1 O LYS A 60 N SER A 31 SHEET 3 AA1 4 LYS A 2 ILE A 8 -1 N ALA A 6 O ILE A 61 SHEET 4 AA1 4 GLY A 89 PRO A 95 -1 O ILE A 94 N LYS A 3 SHEET 1 AA2 2 ILE A 42 TYR A 46 0 SHEET 2 AA2 2 ARG A 49 VAL A 53 -1 O TYR A 51 N GLU A 44 LINK C AFME A 1 N LYS A 2 1555 1555 1.33 LINK C BFME A 1 N LYS A 2 1555 1555 1.33 LINK OE1 GLN A 39 MG MG A 305 1555 1555 2.04 LINK O1G ATP A 301 MG MG A 305 1555 1555 2.00 LINK O1B ATP A 301 MG MG A 305 1555 1555 2.01 LINK O1A ATP A 301 MG MG A 305 1555 1555 2.14 LINK O2 AKG A 302 MG MG A 305 1555 1555 2.07 LINK O5 AKG A 302 MG MG A 305 1555 1555 2.12 CRYST1 89.053 89.053 98.059 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011229 0.006483 0.000000 0.00000 SCALE2 0.000000 0.012966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010198 0.00000 HETATM 1 N AFME A 1 -4.154 -9.776 -7.567 0.52 17.73 N ANISOU 1 N AFME A 1 2387 2689 1663 -393 522 155 N HETATM 2 N BFME A 1 -3.780 -9.719 -7.372 0.48 20.70 N ANISOU 2 N BFME A 1 3386 3071 1408 55 435 652 N HETATM 3 CN AFME A 1 -3.980 -10.815 -6.647 0.52 18.23 C ANISOU 3 CN AFME A 1 2450 2893 1584 137 610 201 C HETATM 4 CN BFME A 1 -3.905 -10.722 -6.434 0.48 23.47 C ANISOU 4 CN BFME A 1 3989 3502 1427 523 663 654 C HETATM 5 O1 AFME A 1 -3.597 -11.994 -6.861 0.52 15.18 O ANISOU 5 O1 AFME A 1 2150 2424 1195 369 451 -237 O HETATM 6 O1 BFME A 1 -3.927 -10.519 -5.207 0.48 23.34 O ANISOU 6 O1 BFME A 1 4162 3387 1320 916 557 174 O HETATM 7 CA AFME A 1 -3.917 -9.841 -8.989 0.52 13.87 C ANISOU 7 CA AFME A 1 1887 2005 1380 -702 312 -14 C HETATM 8 CA BFME A 1 -3.761 -9.859 -8.821 0.48 17.14 C ANISOU 8 CA BFME A 1 2400 2704 1410 -373 357 316 C HETATM 9 CB AFME A 1 -5.090 -9.504 -9.934 0.52 13.14 C ANISOU 9 CB AFME A 1 1937 1714 1340 -708 218 0 C HETATM 10 CB BFME A 1 -5.144 -9.700 -9.508 0.48 17.81 C ANISOU 10 CB BFME A 1 1987 3081 1698 -584 343 481 C HETATM 11 CG AFME A 1 -6.386 -10.187 -9.609 0.52 15.57 C ANISOU 11 CG AFME A 1 2096 2101 1718 -690 364 60 C HETATM 12 CG BFME A 1 -6.088 -10.837 -9.146 0.48 20.14 C ANISOU 12 CG BFME A 1 1931 3630 2090 -392 260 545 C HETATM 13 SD AFME A 1 -6.066 -11.889 -9.270 0.52 18.74 S ANISOU 13 SD AFME A 1 2449 2397 2274 -608 315 218 S HETATM 14 SD BFME A 1 -7.639 -10.792 -10.017 0.48 21.84 S ANISOU 14 SD BFME A 1 1743 4188 2366 -694 47 413 S HETATM 15 CE AFME A 1 -7.587 -12.264 -8.589 0.52 19.58 C ANISOU 15 CE AFME A 1 2445 2475 2519 -729 199 226 C HETATM 16 CE BFME A 1 -8.286 -9.442 -9.192 0.48 22.19 C ANISOU 16 CE BFME A 1 1614 4444 2373 -689 205 532 C HETATM 17 C AFME A 1 -2.790 -8.880 -9.419 0.52 12.68 C ANISOU 17 C AFME A 1 1814 1637 1369 -174 235 -169 C HETATM 18 C BFME A 1 -2.695 -8.900 -9.349 0.48 13.48 C ANISOU 18 C BFME A 1 1935 1910 1277 -280 266 136 C HETATM 19 O AFME A 1 -2.607 -7.750 -8.927 0.52 12.95 O ANISOU 19 O AFME A 1 1981 1572 1366 168 116 -260 O HETATM 20 O BFME A 1 -2.455 -7.799 -8.846 0.48 13.16 O ANISOU 20 O BFME A 1 1770 2040 1191 -182 234 190 O