HEADER TRANSFERASE 14-JUL-21 7P5L TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM HASSIACUM GLUCOSYL-3- TITLE 2 PHOSPHOGLYCERATE SYNTHASE AT PH 7.1 - APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.1.266; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE C-TERMINAL KLAAALEHHHHHH SEQUENCE CORRESPONDS TO A COMPND 7 LINKER FOLLOWED BY AN HEXAHISTIDINE TAG USED FOR PROTEIN PURIFICATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM HASSIACUM (STRAIN DSM 44199 / SOURCE 3 CIP 105218 / JCM 12690 / 3849); SOURCE 4 ORGANISM_COMMON: MYCOBACTERIUM HASSIACUM; SOURCE 5 ORGANISM_TAXID: 1122247; SOURCE 6 STRAIN: DSM 44199 / CIP 105218 / JCM 12690 / 3849; SOURCE 7 GENE: GPGS, C731_3243, MHAS_02845; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUCOSE, UDP, THERMOSTABLE, TRANSFERASE, GTA-FOLD EXPDTA X-RAY DIFFRACTION AUTHOR A.SILVA,D.NUNES-COSTA,P.J.BARBOSA PEREIRA,S.MACEDO-RIBEIRO REVDAT 3 07-FEB-24 7P5L 1 REMARK REVDAT 2 01-MAR-23 7P5L 1 AUTHOR REVDAT 1 18-JAN-23 7P5L 0 JRNL AUTH A.SILVA,D.NUNES-COSTA,N.EMPADINHAS,P.J.BARBOSA PEREIRA, JRNL AUTH 2 S.MACEDO-RIBEIRO JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM HASSIACUM JRNL TITL 2 GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE AT PH 7.1 - APO FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 182145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 9129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2300 - 3.7900 0.99 6119 294 0.1645 0.1942 REMARK 3 2 3.7900 - 3.0100 1.00 5910 309 0.1465 0.1507 REMARK 3 3 3.0100 - 2.6300 0.99 5820 327 0.1456 0.1561 REMARK 3 4 2.6300 - 2.3900 1.00 5840 285 0.1341 0.1576 REMARK 3 5 2.3900 - 2.2200 1.00 5793 326 0.1267 0.1456 REMARK 3 6 2.2200 - 2.0900 1.00 5789 314 0.1248 0.1415 REMARK 3 7 2.0900 - 1.9800 1.00 5838 298 0.1263 0.1587 REMARK 3 8 1.9800 - 1.9000 1.00 5786 299 0.1251 0.1449 REMARK 3 9 1.9000 - 1.8200 0.99 5768 279 0.1205 0.1366 REMARK 3 10 1.8200 - 1.7600 1.00 5777 320 0.1167 0.1351 REMARK 3 11 1.7600 - 1.7000 1.00 5732 315 0.1205 0.1465 REMARK 3 12 1.7000 - 1.6600 1.00 5731 335 0.1231 0.1455 REMARK 3 13 1.6600 - 1.6100 1.00 5776 290 0.1249 0.1511 REMARK 3 14 1.6100 - 1.5700 1.00 5772 286 0.1276 0.1502 REMARK 3 15 1.5700 - 1.5400 1.00 5726 306 0.1228 0.1534 REMARK 3 16 1.5400 - 1.5000 1.00 5773 315 0.1253 0.1618 REMARK 3 17 1.5000 - 1.4700 0.99 5707 284 0.1301 0.1693 REMARK 3 18 1.4700 - 1.4500 1.00 5762 294 0.1325 0.1532 REMARK 3 19 1.4500 - 1.4200 1.00 5697 305 0.1315 0.1562 REMARK 3 20 1.4200 - 1.4000 1.00 5741 313 0.1420 0.1823 REMARK 3 21 1.4000 - 1.3700 1.00 5732 305 0.1557 0.1809 REMARK 3 22 1.3700 - 1.3500 1.00 5741 302 0.1667 0.1938 REMARK 3 23 1.3500 - 1.3300 1.00 5707 291 0.1753 0.1881 REMARK 3 24 1.3300 - 1.3100 1.00 5735 321 0.1891 0.2146 REMARK 3 25 1.3100 - 1.3000 1.00 5688 303 0.2014 0.2176 REMARK 3 26 1.3000 - 1.2800 0.99 5692 305 0.1926 0.2309 REMARK 3 27 1.2800 - 1.2600 1.00 5728 292 0.2054 0.2247 REMARK 3 28 1.2600 - 1.2500 1.00 5680 314 0.2052 0.2440 REMARK 3 29 1.2500 - 1.2300 1.00 5730 307 0.2083 0.2263 REMARK 3 30 1.2300 - 1.2200 1.00 5726 295 0.2313 0.2624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.109 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4738 REMARK 3 ANGLE : 1.008 6506 REMARK 3 CHIRALITY : 0.078 777 REMARK 3 PLANARITY : 0.016 855 REMARK 3 DIHEDRAL : 6.147 704 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7P5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292117004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96112 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JULY 4 2012 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 182244 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.220 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.62500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3E25 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.165 M DL-MALIC ACID PH 7.1; 22% REMARK 280 (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.54900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.63200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.30250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.63200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.54900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.30250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 177.74500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 181.21000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -47.63200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 VAL A 4 REMARK 465 LYS A 167 REMARK 465 THR A 168 REMARK 465 SER A 169 REMARK 465 GLY A 170 REMARK 465 SER A 171 REMARK 465 GLU A 172 REMARK 465 ASP A 173 REMARK 465 ALA A 174 REMARK 465 HIS A 175 REMARK 465 PHE A 287 REMARK 465 PHE A 288 REMARK 465 ALA A 289 REMARK 465 ASP A 290 REMARK 465 GLY A 291 REMARK 465 ASP A 292 REMARK 465 GLY A 293 REMARK 465 PHE A 294 REMARK 465 SER A 295 REMARK 465 PRO A 296 REMARK 465 ARG A 297 REMARK 465 THR A 298 REMARK 465 SER A 299 REMARK 465 GLU A 300 REMARK 465 VAL A 301 REMARK 465 SER A 302 REMARK 465 LYS A 315 REMARK 465 LEU A 316 REMARK 465 ALA A 317 REMARK 465 ALA A 318 REMARK 465 ALA A 319 REMARK 465 LEU A 320 REMARK 465 GLU A 321 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LEU B 3 REMARK 465 VAL B 4 REMARK 465 PRO B 5 REMARK 465 ASP B 6 REMARK 465 LEU B 7 REMARK 465 THR B 8 REMARK 465 ALA B 9 REMARK 465 LEU B 166 REMARK 465 LYS B 167 REMARK 465 THR B 168 REMARK 465 SER B 169 REMARK 465 GLY B 170 REMARK 465 SER B 171 REMARK 465 GLU B 172 REMARK 465 ASP B 173 REMARK 465 ALA B 174 REMARK 465 HIS B 175 REMARK 465 GLY B 176 REMARK 465 PHE B 287 REMARK 465 PHE B 288 REMARK 465 ALA B 289 REMARK 465 ASP B 290 REMARK 465 GLY B 291 REMARK 465 ASP B 292 REMARK 465 GLY B 293 REMARK 465 PHE B 294 REMARK 465 SER B 295 REMARK 465 PRO B 296 REMARK 465 ARG B 297 REMARK 465 THR B 298 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 465 HIS B 325 REMARK 465 HIS B 326 REMARK 465 HIS B 327 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 255 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 139 CD PRO A 139 N 0.114 REMARK 500 PRO B 256 CD PRO B 256 N -0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 82 -158.87 -91.39 REMARK 500 ASP A 136 72.75 -118.81 REMARK 500 LEU B 102 78.13 -153.98 REMARK 500 THR B 285 98.55 -61.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 117 0.12 SIDE CHAIN REMARK 500 ARG B 117 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 780 DISTANCE = 5.89 ANGSTROMS DBREF 7P5L A 1 314 UNP K5B7Z4 K5B7Z4_MYCHD 1 314 DBREF 7P5L B 1 314 UNP K5B7Z4 K5B7Z4_MYCHD 1 314 SEQADV 7P5L LYS A 315 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L LEU A 316 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L ALA A 317 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L ALA A 318 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L ALA A 319 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L LEU A 320 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L GLU A 321 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L HIS A 322 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L HIS A 323 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L HIS A 324 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L HIS A 325 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L HIS A 326 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L HIS A 327 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L LYS B 315 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L LEU B 316 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L ALA B 317 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L ALA B 318 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L ALA B 319 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L LEU B 320 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L GLU B 321 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L HIS B 322 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L HIS B 323 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L HIS B 324 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L HIS B 325 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L HIS B 326 UNP K5B7Z4 EXPRESSION TAG SEQADV 7P5L HIS B 327 UNP K5B7Z4 EXPRESSION TAG SEQRES 1 A 327 MET THR LEU VAL PRO ASP LEU THR ALA THR ASP LEU ALA SEQRES 2 A 327 ARG HIS ARG TRP LEU THR ASP ASN SER TRP THR ARG PRO SEQRES 3 A 327 THR TRP THR VAL ALA GLU LEU GLU ALA ALA LYS ALA GLY SEQRES 4 A 327 ARG THR ILE SER VAL VAL LEU PRO ALA LEU ASN GLU GLU SEQRES 5 A 327 GLU THR VAL GLY GLY VAL VAL GLU THR ILE ARG PRO LEU SEQRES 6 A 327 LEU GLY GLY LEU VAL ASP GLU LEU ILE VAL LEU ASP SER SEQRES 7 A 327 GLY SER THR ASP ASP THR GLU ILE ARG ALA MET ALA ALA SEQRES 8 A 327 GLY ALA ARG VAL ILE SER ARG GLU VAL ALA LEU PRO GLU SEQRES 9 A 327 VAL ALA PRO GLN PRO GLY LYS GLY GLU VAL LEU TRP ARG SEQRES 10 A 327 SER LEU ALA ALA THR THR GLY ASP ILE ILE VAL PHE ILE SEQRES 11 A 327 ASP SER ASP LEU ILE ASP PRO ASP PRO MET PHE VAL PRO SEQRES 12 A 327 LYS LEU VAL GLY PRO LEU LEU LEU SER GLU GLY VAL HIS SEQRES 13 A 327 LEU VAL LYS GLY PHE TYR ARG ARG PRO LEU LYS THR SER SEQRES 14 A 327 GLY SER GLU ASP ALA HIS GLY GLY GLY ARG VAL THR GLU SEQRES 15 A 327 LEU VAL ALA ARG PRO LEU LEU ALA ALA LEU ARG PRO GLU SEQRES 16 A 327 LEU THR CYS VAL LEU GLN PRO LEU GLY GLY GLU TYR ALA SEQRES 17 A 327 GLY THR ARG GLU LEU LEU MET SER VAL PRO PHE ALA PRO SEQRES 18 A 327 GLY TYR GLY VAL GLU ILE GLY LEU LEU VAL ASP THR TYR SEQRES 19 A 327 ASP ARG LEU GLY LEU ASP ALA ILE ALA GLN VAL ASN LEU SEQRES 20 A 327 GLY VAL ARG ALA HIS ARG ASN ARG PRO LEU THR ASP LEU SEQRES 21 A 327 ALA ALA MET SER ARG GLN VAL ILE ALA THR LEU PHE SER SEQRES 22 A 327 ARG CYS GLY VAL PRO ASP SER GLY VAL GLY LEU THR GLN SEQRES 23 A 327 PHE PHE ALA ASP GLY ASP GLY PHE SER PRO ARG THR SER SEQRES 24 A 327 GLU VAL SER LEU VAL ASP ARG PRO PRO MET ASN THR LEU SEQRES 25 A 327 ARG GLY LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 26 A 327 HIS HIS SEQRES 1 B 327 MET THR LEU VAL PRO ASP LEU THR ALA THR ASP LEU ALA SEQRES 2 B 327 ARG HIS ARG TRP LEU THR ASP ASN SER TRP THR ARG PRO SEQRES 3 B 327 THR TRP THR VAL ALA GLU LEU GLU ALA ALA LYS ALA GLY SEQRES 4 B 327 ARG THR ILE SER VAL VAL LEU PRO ALA LEU ASN GLU GLU SEQRES 5 B 327 GLU THR VAL GLY GLY VAL VAL GLU THR ILE ARG PRO LEU SEQRES 6 B 327 LEU GLY GLY LEU VAL ASP GLU LEU ILE VAL LEU ASP SER SEQRES 7 B 327 GLY SER THR ASP ASP THR GLU ILE ARG ALA MET ALA ALA SEQRES 8 B 327 GLY ALA ARG VAL ILE SER ARG GLU VAL ALA LEU PRO GLU SEQRES 9 B 327 VAL ALA PRO GLN PRO GLY LYS GLY GLU VAL LEU TRP ARG SEQRES 10 B 327 SER LEU ALA ALA THR THR GLY ASP ILE ILE VAL PHE ILE SEQRES 11 B 327 ASP SER ASP LEU ILE ASP PRO ASP PRO MET PHE VAL PRO SEQRES 12 B 327 LYS LEU VAL GLY PRO LEU LEU LEU SER GLU GLY VAL HIS SEQRES 13 B 327 LEU VAL LYS GLY PHE TYR ARG ARG PRO LEU LYS THR SER SEQRES 14 B 327 GLY SER GLU ASP ALA HIS GLY GLY GLY ARG VAL THR GLU SEQRES 15 B 327 LEU VAL ALA ARG PRO LEU LEU ALA ALA LEU ARG PRO GLU SEQRES 16 B 327 LEU THR CYS VAL LEU GLN PRO LEU GLY GLY GLU TYR ALA SEQRES 17 B 327 GLY THR ARG GLU LEU LEU MET SER VAL PRO PHE ALA PRO SEQRES 18 B 327 GLY TYR GLY VAL GLU ILE GLY LEU LEU VAL ASP THR TYR SEQRES 19 B 327 ASP ARG LEU GLY LEU ASP ALA ILE ALA GLN VAL ASN LEU SEQRES 20 B 327 GLY VAL ARG ALA HIS ARG ASN ARG PRO LEU THR ASP LEU SEQRES 21 B 327 ALA ALA MET SER ARG GLN VAL ILE ALA THR LEU PHE SER SEQRES 22 B 327 ARG CYS GLY VAL PRO ASP SER GLY VAL GLY LEU THR GLN SEQRES 23 B 327 PHE PHE ALA ASP GLY ASP GLY PHE SER PRO ARG THR SER SEQRES 24 B 327 GLU VAL SER LEU VAL ASP ARG PRO PRO MET ASN THR LEU SEQRES 25 B 327 ARG GLY LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 26 B 327 HIS HIS HET LMR A 401 9 HET MLT B 401 9 HETNAM LMR (2S)-2-HYDROXYBUTANEDIOIC ACID HETNAM MLT D-MALATE HETSYN LMR L-MALATE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 3 LMR C4 H6 O5 FORMUL 4 MLT C4 H6 O5 FORMUL 5 HOH *587(H2 O) HELIX 1 AA1 THR A 8 ASN A 21 1 14 HELIX 2 AA2 THR A 29 LYS A 37 1 9 HELIX 3 AA3 THR A 54 ARG A 63 1 10 HELIX 4 AA4 PRO A 64 LEU A 66 5 3 HELIX 5 AA5 ASP A 83 GLY A 92 1 10 HELIX 6 AA6 ARG A 98 LEU A 102 1 5 HELIX 7 AA7 GLY A 110 THR A 122 1 13 HELIX 8 AA8 MET A 140 SER A 152 1 13 HELIX 9 AA9 GLY A 178 VAL A 184 1 7 HELIX 10 AB1 VAL A 184 ARG A 193 1 10 HELIX 11 AB2 PRO A 194 VAL A 199 5 6 HELIX 12 AB3 ARG A 211 MET A 215 1 5 HELIX 13 AB4 PRO A 221 TYR A 223 5 3 HELIX 14 AB5 GLY A 224 GLY A 238 1 15 HELIX 15 AB6 PRO A 256 CYS A 275 1 20 HELIX 16 AB7 PRO A 308 LEU A 312 5 5 HELIX 17 AB8 ASP B 11 ASN B 21 1 11 HELIX 18 AB9 THR B 29 ALA B 36 1 8 HELIX 19 AC1 THR B 54 ARG B 63 1 10 HELIX 20 AC2 PRO B 64 LEU B 66 5 3 HELIX 21 AC3 ASP B 83 ALA B 91 1 9 HELIX 22 AC4 ARG B 98 LEU B 102 1 5 HELIX 23 AC5 GLY B 110 LEU B 119 1 10 HELIX 24 AC6 ALA B 120 THR B 122 5 3 HELIX 25 AC7 MET B 140 SER B 152 1 13 HELIX 26 AC8 GLY B 178 VAL B 184 1 7 HELIX 27 AC9 VAL B 184 ARG B 193 1 10 HELIX 28 AD1 PRO B 194 VAL B 199 5 6 HELIX 29 AD2 ARG B 211 MET B 215 1 5 HELIX 30 AD3 PRO B 221 TYR B 223 5 3 HELIX 31 AD4 GLY B 224 GLY B 238 1 15 HELIX 32 AD5 PRO B 256 GLY B 276 1 21 HELIX 33 AD6 PRO B 308 LEU B 312 5 5 HELIX 34 AD7 ARG B 313 LEU B 320 1 8 SHEET 1 AA1 8 SER A 22 TRP A 23 0 SHEET 2 AA1 8 ILE A 242 VAL A 249 1 O ASN A 246 N TRP A 23 SHEET 3 AA1 8 LEU A 157 ARG A 163 1 N PHE A 161 O LEU A 247 SHEET 4 AA1 8 TYR A 207 THR A 210 -1 O ALA A 208 N VAL A 158 SHEET 5 AA1 8 ILE A 126 PHE A 129 -1 N PHE A 129 O TYR A 207 SHEET 6 AA1 8 ILE A 42 ALA A 48 1 N VAL A 45 O VAL A 128 SHEET 7 AA1 8 GLU A 72 ASP A 77 1 O ILE A 74 N VAL A 44 SHEET 8 AA1 8 ARG A 94 SER A 97 1 O ARG A 94 N LEU A 73 SHEET 1 AA2 8 SER B 22 TRP B 23 0 SHEET 2 AA2 8 ILE B 242 VAL B 249 1 O ASN B 246 N TRP B 23 SHEET 3 AA2 8 LEU B 157 ARG B 163 1 N PHE B 161 O LEU B 247 SHEET 4 AA2 8 TYR B 207 THR B 210 -1 O ALA B 208 N VAL B 158 SHEET 5 AA2 8 ILE B 126 PHE B 129 -1 N PHE B 129 O TYR B 207 SHEET 6 AA2 8 ILE B 42 ALA B 48 1 N VAL B 45 O VAL B 128 SHEET 7 AA2 8 GLU B 72 ASP B 77 1 O ILE B 74 N VAL B 44 SHEET 8 AA2 8 ARG B 94 SER B 97 1 O ILE B 96 N VAL B 75 CRYST1 71.098 90.605 95.264 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014065 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010497 0.00000