HEADER TRANSFERASE 19-JUL-21 7P7G TITLE CRYSTAL STRUCTURE OF PHOSPHORYLATED PT220 CASEIN KINASE I DELTA TITLE 2 (CK1D), CONFORMATION 2 AND 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE I ISOFORM DELTA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CKI-DELTA,CKID,TAU-PROTEIN KINASE CSNK1D; COMPND 5 EC: 2.7.11.1,2.7.11.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSNK1D, HCKID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS CASEIN KINASE, CK1D, CSNK1D, CONFORMATION PLASTICITY, ALPHA G, KEYWDS 2 ACTIVATION SEGMENT, PHOSPHORYLATION., STRUCTURAL GENOMICS, KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,R.ZHUBI,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 31-JAN-24 7P7G 1 REMARK REVDAT 3 15-JUN-22 7P7G 1 JRNL REVDAT 2 20-APR-22 7P7G 1 JRNL REVDAT 1 13-APR-22 7P7G 0 JRNL AUTH S.N.CULLATI,A.CHAIKUAD,J.S.CHEN,J.GEBEL,L.TESMER,R.ZHUBI, JRNL AUTH 2 J.NAVARRETE-PEREA,R.X.GUILLEN,S.P.GYGI,G.HUMMER,V.DOTSCH, JRNL AUTH 3 S.KNAPP,K.L.GOULD JRNL TITL KINASE DOMAIN AUTOPHOSPHORYLATION REWIRES THE ACTIVITY AND JRNL TITL 2 SUBSTRATE SPECIFICITY OF CK1 ENZYMES. JRNL REF MOL.CELL V. 82 2006 2022 JRNL REFN ISSN 1097-2765 JRNL PMID 35353987 JRNL DOI 10.1016/J.MOLCEL.2022.03.005 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3122 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4410 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4664 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 429 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.28000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.611 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4893 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4616 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6583 ; 1.484 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10616 ; 1.388 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 572 ; 7.473 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 273 ;32.066 ;20.916 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 876 ;13.617 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;18.295 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 595 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5448 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1206 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 8 293 B 8 293 8632 0.150 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5122 69.0496 75.6589 REMARK 3 T TENSOR REMARK 3 T11: 0.1794 T22: 0.1668 REMARK 3 T33: 0.1008 T12: 0.0300 REMARK 3 T13: 0.0148 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 3.6178 L22: 7.4768 REMARK 3 L33: 2.5570 L12: 1.5267 REMARK 3 L13: 0.0324 L23: -0.8240 REMARK 3 S TENSOR REMARK 3 S11: 0.0910 S12: -0.2055 S13: 0.1543 REMARK 3 S21: 0.2058 S22: -0.1108 S23: -0.1145 REMARK 3 S31: -0.1648 S32: -0.1122 S33: 0.0198 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4189 76.7295 53.7627 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.0248 REMARK 3 T33: 0.0294 T12: 0.0073 REMARK 3 T13: 0.0050 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.1834 L22: 1.3849 REMARK 3 L33: 1.0882 L12: -0.5317 REMARK 3 L13: 0.1603 L23: -0.1714 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: -0.1148 S13: 0.0399 REMARK 3 S21: 0.0911 S22: 0.0368 S23: 0.1589 REMARK 3 S31: -0.1335 S32: -0.1195 S33: 0.0024 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 37 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1425 60.6611 -2.2960 REMARK 3 T TENSOR REMARK 3 T11: 0.1089 T22: 0.0933 REMARK 3 T33: 0.0465 T12: -0.0440 REMARK 3 T13: 0.0048 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 2.1232 L22: 2.1127 REMARK 3 L33: 7.6064 L12: -0.5230 REMARK 3 L13: 1.2512 L23: -2.1155 REMARK 3 S TENSOR REMARK 3 S11: 0.0423 S12: -0.0213 S13: -0.2118 REMARK 3 S21: 0.0350 S22: -0.1013 S23: -0.0263 REMARK 3 S31: 0.2816 S32: -0.0858 S33: 0.0591 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 293 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1491 73.2621 17.2427 REMARK 3 T TENSOR REMARK 3 T11: 0.0330 T22: 0.0123 REMARK 3 T33: 0.0100 T12: -0.0054 REMARK 3 T13: -0.0045 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.4696 L22: 1.4818 REMARK 3 L33: 1.3321 L12: 0.1039 REMARK 3 L13: -0.0182 L23: 0.4625 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: 0.0478 S13: -0.0984 REMARK 3 S21: 0.0373 S22: 0.0037 S23: 0.0526 REMARK 3 S31: 0.1451 S32: -0.1023 S33: -0.0125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7P7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292117154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63264 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.97800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6RU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350 AND 0.1 M AMMONIUM REMARK 280 CITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.77100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.98300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.12700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.98300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.77100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.12700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ARG A 4 REMARK 465 VAL A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 7 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 ARG B 4 REMARK 465 VAL B 5 REMARK 465 GLY B 6 REMARK 465 LYS B 217 REMARK 465 ALA B 218 REMARK 465 SER B 283 REMARK 465 TYR B 284 REMARK 465 LYS B 294 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TPO A 220 CG2 OG1 P O1P O2P O3P REMARK 470 LYS A 221 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 401 O HOH A 406 2.06 REMARK 500 O HOH A 606 O HOH A 617 2.10 REMARK 500 O HOH B 444 O HOH B 594 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 169 CD GLU A 169 OE2 -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 115 CG - CD - NE ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG A 115 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 115 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 115 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 41 -66.36 -93.91 REMARK 500 THR A 44 -179.68 62.21 REMARK 500 ASN A 123 16.00 82.66 REMARK 500 ASP A 128 43.49 -145.21 REMARK 500 ASP A 149 84.62 62.42 REMARK 500 HIS A 162 9.05 57.53 REMARK 500 LYS A 221 -23.13 93.53 REMARK 500 TRP B 70 109.81 -59.71 REMARK 500 ASN B 123 12.21 81.33 REMARK 500 ASP B 128 52.52 -151.39 REMARK 500 ASP B 149 86.32 70.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 7P7G A 1 294 UNP P48730 KC1D_HUMAN 1 294 DBREF 7P7G B 1 294 UNP P48730 KC1D_HUMAN 1 294 SEQADV 7P7G SER A -1 UNP P48730 EXPRESSION TAG SEQADV 7P7G MET A 0 UNP P48730 EXPRESSION TAG SEQADV 7P7G SER B -1 UNP P48730 EXPRESSION TAG SEQADV 7P7G MET B 0 UNP P48730 EXPRESSION TAG SEQRES 1 A 296 SER MET MET GLU LEU ARG VAL GLY ASN ARG TYR ARG LEU SEQRES 2 A 296 GLY ARG LYS ILE GLY SER GLY SER PHE GLY ASP ILE TYR SEQRES 3 A 296 LEU GLY THR ASP ILE ALA ALA GLY GLU GLU VAL ALA ILE SEQRES 4 A 296 LYS LEU GLU CYS VAL LYS THR LYS HIS PRO GLN LEU HIS SEQRES 5 A 296 ILE GLU SER LYS ILE TYR LYS MET MET GLN GLY GLY VAL SEQRES 6 A 296 GLY ILE PRO THR ILE ARG TRP CYS GLY ALA GLU GLY ASP SEQRES 7 A 296 TYR ASN VAL MET VAL MET GLU LEU LEU GLY PRO SER LEU SEQRES 8 A 296 GLU ASP LEU PHE ASN PHE CYS SER ARG LYS PHE SER LEU SEQRES 9 A 296 LYS THR VAL LEU LEU LEU ALA ASP GLN MET ILE SER ARG SEQRES 10 A 296 ILE GLU TYR ILE HIS SER LYS ASN PHE ILE HIS ARG ASP SEQRES 11 A 296 VAL LYS PRO ASP ASN PHE LEU MET GLY LEU GLY LYS LYS SEQRES 12 A 296 GLY ASN LEU VAL TYR ILE ILE ASP PHE GLY LEU ALA LYS SEQRES 13 A 296 LYS TYR ARG ASP ALA ARG THR HIS GLN HIS ILE PRO TYR SEQRES 14 A 296 ARG GLU ASN LYS ASN LEU THR GLY THR ALA ARG TYR ALA SEQRES 15 A 296 SER ILE ASN THR HIS LEU GLY ILE GLU GLN SER ARG ARG SEQRES 16 A 296 ASP ASP LEU GLU SER LEU GLY TYR VAL LEU MET TYR PHE SEQRES 17 A 296 ASN LEU GLY SER LEU PRO TRP GLN GLY LEU LYS ALA ALA SEQRES 18 A 296 TPO LYS ARG GLN LYS TYR GLU ARG ILE SER GLU LYS LYS SEQRES 19 A 296 MET SER THR PRO ILE GLU VAL LEU CYS LYS GLY TYR PRO SEQRES 20 A 296 SER GLU PHE ALA THR TYR LEU ASN PHE CYS ARG SER LEU SEQRES 21 A 296 ARG PHE ASP ASP LYS PRO ASP TYR SER TYR LEU ARG GLN SEQRES 22 A 296 LEU PHE ARG ASN LEU PHE HIS ARG GLN GLY PHE SER TYR SEQRES 23 A 296 ASP TYR VAL PHE ASP TRP ASN MET LEU LYS SEQRES 1 B 296 SER MET MET GLU LEU ARG VAL GLY ASN ARG TYR ARG LEU SEQRES 2 B 296 GLY ARG LYS ILE GLY SER GLY SER PHE GLY ASP ILE TYR SEQRES 3 B 296 LEU GLY THR ASP ILE ALA ALA GLY GLU GLU VAL ALA ILE SEQRES 4 B 296 LYS LEU GLU CYS VAL LYS THR LYS HIS PRO GLN LEU HIS SEQRES 5 B 296 ILE GLU SER LYS ILE TYR LYS MET MET GLN GLY GLY VAL SEQRES 6 B 296 GLY ILE PRO THR ILE ARG TRP CYS GLY ALA GLU GLY ASP SEQRES 7 B 296 TYR ASN VAL MET VAL MET GLU LEU LEU GLY PRO SER LEU SEQRES 8 B 296 GLU ASP LEU PHE ASN PHE CYS SER ARG LYS PHE SER LEU SEQRES 9 B 296 LYS THR VAL LEU LEU LEU ALA ASP GLN MET ILE SER ARG SEQRES 10 B 296 ILE GLU TYR ILE HIS SER LYS ASN PHE ILE HIS ARG ASP SEQRES 11 B 296 VAL LYS PRO ASP ASN PHE LEU MET GLY LEU GLY LYS LYS SEQRES 12 B 296 GLY ASN LEU VAL TYR ILE ILE ASP PHE GLY LEU ALA LYS SEQRES 13 B 296 LYS TYR ARG ASP ALA ARG THR HIS GLN HIS ILE PRO TYR SEQRES 14 B 296 ARG GLU ASN LYS ASN LEU THR GLY THR ALA ARG TYR ALA SEQRES 15 B 296 SER ILE ASN THR HIS LEU GLY ILE GLU GLN SER ARG ARG SEQRES 16 B 296 ASP ASP LEU GLU SER LEU GLY TYR VAL LEU MET TYR PHE SEQRES 17 B 296 ASN LEU GLY SER LEU PRO TRP GLN GLY LEU LYS ALA ALA SEQRES 18 B 296 TPO LYS ARG GLN LYS TYR GLU ARG ILE SER GLU LYS LYS SEQRES 19 B 296 MET SER THR PRO ILE GLU VAL LEU CYS LYS GLY TYR PRO SEQRES 20 B 296 SER GLU PHE ALA THR TYR LEU ASN PHE CYS ARG SER LEU SEQRES 21 B 296 ARG PHE ASP ASP LYS PRO ASP TYR SER TYR LEU ARG GLN SEQRES 22 B 296 LEU PHE ARG ASN LEU PHE HIS ARG GLN GLY PHE SER TYR SEQRES 23 B 296 ASP TYR VAL PHE ASP TRP ASN MET LEU LYS MODRES 7P7G TPO A 220 THR MODIFIED RESIDUE MODRES 7P7G TPO B 220 THR MODIFIED RESIDUE HET TPO A 220 5 HET TPO B 220 11 HET CIT A 301 13 HET EDO A 302 4 HET AMP A 303 23 HET CIT B 301 13 HET CIT B 302 13 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HET EDO B 306 4 HET AMP B 307 23 HETNAM TPO PHOSPHOTHREONINE HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM AMP ADENOSINE MONOPHOSPHATE HETSYN TPO PHOSPHONOTHREONINE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 3 CIT 3(C6 H8 O7) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 5 AMP 2(C10 H14 N5 O7 P) FORMUL 13 HOH *429(H2 O) HELIX 1 AA1 GLN A 48 MET A 59 1 12 HELIX 2 AA2 SER A 88 CYS A 96 1 9 HELIX 3 AA3 SER A 101 LYS A 122 1 22 HELIX 4 AA4 LYS A 130 ASP A 132 5 3 HELIX 5 AA5 LEU A 138 GLY A 142 5 5 HELIX 6 AA6 SER A 181 LEU A 186 1 6 HELIX 7 AA7 SER A 191 GLY A 209 1 19 HELIX 8 AA8 TYR A 225 SER A 234 1 10 HELIX 9 AA9 PRO A 236 CYS A 241 1 6 HELIX 10 AB1 SER A 246 LEU A 258 1 13 HELIX 11 AB2 ASP A 265 GLN A 280 1 16 HELIX 12 AB3 PHE A 288 LEU A 293 5 6 HELIX 13 AB4 GLN B 48 GLN B 60 1 13 HELIX 14 AB5 SER B 88 CYS B 96 1 9 HELIX 15 AB6 SER B 101 LYS B 122 1 22 HELIX 16 AB7 LYS B 130 ASP B 132 5 3 HELIX 17 AB8 LEU B 138 GLY B 142 5 5 HELIX 18 AB9 SER B 181 LEU B 186 1 6 HELIX 19 AC1 SER B 191 GLY B 209 1 19 HELIX 20 AC2 TPO B 220 SER B 234 1 15 HELIX 21 AC3 PRO B 236 CYS B 241 1 6 HELIX 22 AC4 SER B 246 LEU B 258 1 13 HELIX 23 AC5 ASP B 265 GLY B 281 1 17 HELIX 24 AC6 PHE B 288 MET B 292 5 5 SHEET 1 AA1 5 TYR A 9 GLY A 18 0 SHEET 2 AA1 5 GLY A 21 ASP A 28 -1 O LEU A 25 N GLY A 12 SHEET 3 AA1 5 GLU A 33 GLU A 40 -1 O ILE A 37 N TYR A 24 SHEET 4 AA1 5 TYR A 77 MET A 82 -1 O MET A 82 N ALA A 36 SHEET 5 AA1 5 ILE A 68 GLU A 74 -1 N GLU A 74 O TYR A 77 SHEET 1 AA2 2 PHE A 124 ILE A 125 0 SHEET 2 AA2 2 LYS A 154 LYS A 155 -1 O LYS A 154 N ILE A 125 SHEET 1 AA3 2 PHE A 134 MET A 136 0 SHEET 2 AA3 2 VAL A 145 ILE A 147 -1 O TYR A 146 N LEU A 135 SHEET 1 AA4 5 TYR B 9 SER B 17 0 SHEET 2 AA4 5 ASP B 22 ASP B 28 -1 O LEU B 25 N GLY B 12 SHEET 3 AA4 5 GLU B 33 CYS B 41 -1 O GLU B 33 N ASP B 28 SHEET 4 AA4 5 TYR B 77 GLU B 83 -1 O MET B 82 N ALA B 36 SHEET 5 AA4 5 ILE B 68 GLU B 74 -1 N GLU B 74 O TYR B 77 SHEET 1 AA5 2 PHE B 124 ILE B 125 0 SHEET 2 AA5 2 LYS B 154 LYS B 155 -1 O LYS B 154 N ILE B 125 SHEET 1 AA6 2 PHE B 134 MET B 136 0 SHEET 2 AA6 2 VAL B 145 ILE B 147 -1 O TYR B 146 N LEU B 135 LINK C ALA A 219 N TPO A 220 1555 1555 1.35 LINK C TPO A 220 N LYS A 221 1555 1555 1.34 LINK C ALA B 219 N TPO B 220 1555 1555 1.34 LINK C TPO B 220 N LYS B 221 1555 1555 1.34 CRYST1 53.542 64.254 163.966 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018677 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015563 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006099 0.00000