data_7PAG # _entry.id 7PAG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7PAG pdb_00007pag 10.2210/pdb7pag/pdb WWPDB D_1292117212 ? ? EMDB EMD-13269 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'The pore conformation of lymphocyte perforin' _pdbx_database_related.db_id EMD-13269 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7PAG _pdbx_database_status.recvd_initial_deposition_date 2021-07-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ivanova, M.E.' 1 0000-0002-2871-1205 'Lukoyanova, N.' 2 0000-0002-2051-0812 'Malhotra, S.' 3 0000-0002-3165-9081 'Topf, M.' 4 0000-0002-8185-1215 'Trapani, J.A.' 5 0000-0003-0983-1532 'Voskoboinik, I.' 6 0000-0002-6410-009X 'Saibil, H.R.' 7 0000-0002-2266-8891 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first eabk3147 _citation.page_last eabk3147 _citation.title 'The pore conformation of lymphocyte perforin.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.abk3147 _citation.pdbx_database_id_PubMed 35148176 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ivanova, M.E.' 1 ? primary 'Lukoyanova, N.' 2 0000-0002-2051-0812 primary 'Malhotra, S.' 3 0000-0002-3165-9081 primary 'Topf, M.' 4 0000-0002-8185-1215 primary 'Trapani, J.A.' 5 0000-0003-0983-1532 primary 'Voskoboinik, I.' 6 0000-0002-6410-009X primary 'Saibil, H.R.' 7 0000-0002-2266-8891 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7PAG _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Perforin-1 60827.051 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 3 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'P1,Cytolysin,Lymphocyte pore-forming protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PCYTATRSECKQKHKFVPGVWMAGEGMDVTTLRRSGSFPVNTQRFLRPDRTCTLCKNSLMRDATQRLPVAITHWRPHSSH CQRNVAAAKVHSTEGVAREAAANINNDWRVGLDVNPRPEANMRASVAGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSF RLVQKPPLHLDFKKALRALPRNFNSSTEHAYHRLISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVE AQVSIGAQASVSSEYKACEEKKKQHKMATSFHQTYRERHVEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSNPGLVDY SLEPLHTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSN FRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSP HSGFHEVTCELNHGRVKFSYHAKCLPHLTGGTCLEYAPQGLLGDPPGNRSGAVWHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;PCYTATRSECKQKHKFVPGVWMAGEGMDVTTLRRSGSFPVNTQRFLRPDRTCTLCKNSLMRDATQRLPVAITHWRPHSSH CQRNVAAAKVHSTEGVAREAAANINNDWRVGLDVNPRPEANMRASVAGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSF RLVQKPPLHLDFKKALRALPRNFNSSTEHAYHRLISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVE AQVSIGAQASVSSEYKACEEKKKQHKMATSFHQTYRERHVEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSNPGLVDY SLEPLHTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSN FRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSP HSGFHEVTCELNHGRVKFSYHAKCLPHLTGGTCLEYAPQGLLGDPPGNRSGAVWHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 CYS n 1 3 TYR n 1 4 THR n 1 5 ALA n 1 6 THR n 1 7 ARG n 1 8 SER n 1 9 GLU n 1 10 CYS n 1 11 LYS n 1 12 GLN n 1 13 LYS n 1 14 HIS n 1 15 LYS n 1 16 PHE n 1 17 VAL n 1 18 PRO n 1 19 GLY n 1 20 VAL n 1 21 TRP n 1 22 MET n 1 23 ALA n 1 24 GLY n 1 25 GLU n 1 26 GLY n 1 27 MET n 1 28 ASP n 1 29 VAL n 1 30 THR n 1 31 THR n 1 32 LEU n 1 33 ARG n 1 34 ARG n 1 35 SER n 1 36 GLY n 1 37 SER n 1 38 PHE n 1 39 PRO n 1 40 VAL n 1 41 ASN n 1 42 THR n 1 43 GLN n 1 44 ARG n 1 45 PHE n 1 46 LEU n 1 47 ARG n 1 48 PRO n 1 49 ASP n 1 50 ARG n 1 51 THR n 1 52 CYS n 1 53 THR n 1 54 LEU n 1 55 CYS n 1 56 LYS n 1 57 ASN n 1 58 SER n 1 59 LEU n 1 60 MET n 1 61 ARG n 1 62 ASP n 1 63 ALA n 1 64 THR n 1 65 GLN n 1 66 ARG n 1 67 LEU n 1 68 PRO n 1 69 VAL n 1 70 ALA n 1 71 ILE n 1 72 THR n 1 73 HIS n 1 74 TRP n 1 75 ARG n 1 76 PRO n 1 77 HIS n 1 78 SER n 1 79 SER n 1 80 HIS n 1 81 CYS n 1 82 GLN n 1 83 ARG n 1 84 ASN n 1 85 VAL n 1 86 ALA n 1 87 ALA n 1 88 ALA n 1 89 LYS n 1 90 VAL n 1 91 HIS n 1 92 SER n 1 93 THR n 1 94 GLU n 1 95 GLY n 1 96 VAL n 1 97 ALA n 1 98 ARG n 1 99 GLU n 1 100 ALA n 1 101 ALA n 1 102 ALA n 1 103 ASN n 1 104 ILE n 1 105 ASN n 1 106 ASN n 1 107 ASP n 1 108 TRP n 1 109 ARG n 1 110 VAL n 1 111 GLY n 1 112 LEU n 1 113 ASP n 1 114 VAL n 1 115 ASN n 1 116 PRO n 1 117 ARG n 1 118 PRO n 1 119 GLU n 1 120 ALA n 1 121 ASN n 1 122 MET n 1 123 ARG n 1 124 ALA n 1 125 SER n 1 126 VAL n 1 127 ALA n 1 128 GLY n 1 129 SER n 1 130 HIS n 1 131 SER n 1 132 LYS n 1 133 VAL n 1 134 ALA n 1 135 ASN n 1 136 PHE n 1 137 ALA n 1 138 ALA n 1 139 GLU n 1 140 LYS n 1 141 THR n 1 142 TYR n 1 143 GLN n 1 144 ASP n 1 145 GLN n 1 146 TYR n 1 147 ASN n 1 148 PHE n 1 149 ASN n 1 150 SER n 1 151 ASP n 1 152 THR n 1 153 VAL n 1 154 GLU n 1 155 CYS n 1 156 ARG n 1 157 MET n 1 158 TYR n 1 159 SER n 1 160 PHE n 1 161 ARG n 1 162 LEU n 1 163 VAL n 1 164 GLN n 1 165 LYS n 1 166 PRO n 1 167 PRO n 1 168 LEU n 1 169 HIS n 1 170 LEU n 1 171 ASP n 1 172 PHE n 1 173 LYS n 1 174 LYS n 1 175 ALA n 1 176 LEU n 1 177 ARG n 1 178 ALA n 1 179 LEU n 1 180 PRO n 1 181 ARG n 1 182 ASN n 1 183 PHE n 1 184 ASN n 1 185 SER n 1 186 SER n 1 187 THR n 1 188 GLU n 1 189 HIS n 1 190 ALA n 1 191 TYR n 1 192 HIS n 1 193 ARG n 1 194 LEU n 1 195 ILE n 1 196 SER n 1 197 SER n 1 198 TYR n 1 199 GLY n 1 200 THR n 1 201 HIS n 1 202 PHE n 1 203 ILE n 1 204 THR n 1 205 ALA n 1 206 VAL n 1 207 ASP n 1 208 LEU n 1 209 GLY n 1 210 GLY n 1 211 ARG n 1 212 ILE n 1 213 SER n 1 214 VAL n 1 215 LEU n 1 216 THR n 1 217 ALA n 1 218 LEU n 1 219 ARG n 1 220 THR n 1 221 CYS n 1 222 GLN n 1 223 LEU n 1 224 THR n 1 225 LEU n 1 226 ASN n 1 227 GLY n 1 228 LEU n 1 229 THR n 1 230 ALA n 1 231 ASP n 1 232 GLU n 1 233 VAL n 1 234 GLY n 1 235 ASP n 1 236 CYS n 1 237 LEU n 1 238 ASN n 1 239 VAL n 1 240 GLU n 1 241 ALA n 1 242 GLN n 1 243 VAL n 1 244 SER n 1 245 ILE n 1 246 GLY n 1 247 ALA n 1 248 GLN n 1 249 ALA n 1 250 SER n 1 251 VAL n 1 252 SER n 1 253 SER n 1 254 GLU n 1 255 TYR n 1 256 LYS n 1 257 ALA n 1 258 CYS n 1 259 GLU n 1 260 GLU n 1 261 LYS n 1 262 LYS n 1 263 LYS n 1 264 GLN n 1 265 HIS n 1 266 LYS n 1 267 MET n 1 268 ALA n 1 269 THR n 1 270 SER n 1 271 PHE n 1 272 HIS n 1 273 GLN n 1 274 THR n 1 275 TYR n 1 276 ARG n 1 277 GLU n 1 278 ARG n 1 279 HIS n 1 280 VAL n 1 281 GLU n 1 282 VAL n 1 283 LEU n 1 284 GLY n 1 285 GLY n 1 286 PRO n 1 287 LEU n 1 288 ASP n 1 289 SER n 1 290 THR n 1 291 HIS n 1 292 ASP n 1 293 LEU n 1 294 LEU n 1 295 PHE n 1 296 GLY n 1 297 ASN n 1 298 GLN n 1 299 ALA n 1 300 THR n 1 301 PRO n 1 302 GLU n 1 303 GLN n 1 304 PHE n 1 305 SER n 1 306 THR n 1 307 TRP n 1 308 THR n 1 309 ALA n 1 310 SER n 1 311 LEU n 1 312 PRO n 1 313 SER n 1 314 ASN n 1 315 PRO n 1 316 GLY n 1 317 LEU n 1 318 VAL n 1 319 ASP n 1 320 TYR n 1 321 SER n 1 322 LEU n 1 323 GLU n 1 324 PRO n 1 325 LEU n 1 326 HIS n 1 327 THR n 1 328 LEU n 1 329 LEU n 1 330 GLU n 1 331 GLU n 1 332 GLN n 1 333 ASN n 1 334 PRO n 1 335 LYS n 1 336 ARG n 1 337 GLU n 1 338 ALA n 1 339 LEU n 1 340 ARG n 1 341 GLN n 1 342 ALA n 1 343 ILE n 1 344 SER n 1 345 HIS n 1 346 TYR n 1 347 ILE n 1 348 MET n 1 349 SER n 1 350 ARG n 1 351 ALA n 1 352 ARG n 1 353 TRP n 1 354 GLN n 1 355 ASN n 1 356 CYS n 1 357 SER n 1 358 ARG n 1 359 PRO n 1 360 CYS n 1 361 ARG n 1 362 SER n 1 363 GLY n 1 364 GLN n 1 365 HIS n 1 366 LYS n 1 367 SER n 1 368 SER n 1 369 HIS n 1 370 ASP n 1 371 SER n 1 372 CYS n 1 373 GLN n 1 374 CYS n 1 375 GLU n 1 376 CYS n 1 377 GLN n 1 378 ASP n 1 379 SER n 1 380 LYS n 1 381 VAL n 1 382 THR n 1 383 ASN n 1 384 GLN n 1 385 ASP n 1 386 CYS n 1 387 CYS n 1 388 PRO n 1 389 ARG n 1 390 GLN n 1 391 ARG n 1 392 GLY n 1 393 LEU n 1 394 ALA n 1 395 HIS n 1 396 LEU n 1 397 VAL n 1 398 VAL n 1 399 SER n 1 400 ASN n 1 401 PHE n 1 402 ARG n 1 403 ALA n 1 404 GLU n 1 405 HIS n 1 406 LEU n 1 407 TRP n 1 408 GLY n 1 409 ASP n 1 410 TYR n 1 411 THR n 1 412 THR n 1 413 ALA n 1 414 THR n 1 415 ASP n 1 416 ALA n 1 417 TYR n 1 418 LEU n 1 419 LYS n 1 420 VAL n 1 421 PHE n 1 422 PHE n 1 423 GLY n 1 424 GLY n 1 425 GLN n 1 426 GLU n 1 427 PHE n 1 428 ARG n 1 429 THR n 1 430 GLY n 1 431 VAL n 1 432 VAL n 1 433 TRP n 1 434 ASN n 1 435 ASN n 1 436 ASN n 1 437 ASN n 1 438 PRO n 1 439 ARG n 1 440 TRP n 1 441 THR n 1 442 ASP n 1 443 LYS n 1 444 MET n 1 445 ASP n 1 446 PHE n 1 447 GLU n 1 448 ASN n 1 449 VAL n 1 450 LEU n 1 451 LEU n 1 452 SER n 1 453 THR n 1 454 GLY n 1 455 GLY n 1 456 PRO n 1 457 LEU n 1 458 ARG n 1 459 VAL n 1 460 GLN n 1 461 VAL n 1 462 TRP n 1 463 ASP n 1 464 ALA n 1 465 ASP n 1 466 TYR n 1 467 GLY n 1 468 TRP n 1 469 ASP n 1 470 ASP n 1 471 ASP n 1 472 LEU n 1 473 LEU n 1 474 GLY n 1 475 SER n 1 476 CYS n 1 477 ASP n 1 478 ARG n 1 479 SER n 1 480 PRO n 1 481 HIS n 1 482 SER n 1 483 GLY n 1 484 PHE n 1 485 HIS n 1 486 GLU n 1 487 VAL n 1 488 THR n 1 489 CYS n 1 490 GLU n 1 491 LEU n 1 492 ASN n 1 493 HIS n 1 494 GLY n 1 495 ARG n 1 496 VAL n 1 497 LYS n 1 498 PHE n 1 499 SER n 1 500 TYR n 1 501 HIS n 1 502 ALA n 1 503 LYS n 1 504 CYS n 1 505 LEU n 1 506 PRO n 1 507 HIS n 1 508 LEU n 1 509 THR n 1 510 GLY n 1 511 GLY n 1 512 THR n 1 513 CYS n 1 514 LEU n 1 515 GLU n 1 516 TYR n 1 517 ALA n 1 518 PRO n 1 519 GLN n 1 520 GLY n 1 521 LEU n 1 522 LEU n 1 523 GLY n 1 524 ASP n 1 525 PRO n 1 526 PRO n 1 527 GLY n 1 528 ASN n 1 529 ARG n 1 530 SER n 1 531 GLY n 1 532 ALA n 1 533 VAL n 1 534 TRP n 1 535 HIS n 1 536 HIS n 1 537 HIS n 1 538 HIS n 1 539 HIS n 1 540 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 540 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Prf1, Pfp' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PERF_MOUSE _struct_ref.pdbx_db_accession P10820 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PCYTATRSECKQKHKFVPGVWMAGEGMDVTTLRRSGSFPVNTQRFLRPDRTCTLCKNSLMRDATQRLPVAITHWRPHSSH CQRNVAAAKVHSTEGVAREAAANINNDWRVGLDVNPRPEANMRASVAGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSF RLVQKPPLHLDFKKALRALPRNFNSSTEHAYHRLISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVE AQVSIGAQASVSSEYKACEEKKKQHKMATSFHQTYRERHVEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSNPGLVDY SLEPLHTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSN FRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSP HSGFHEVTCELNHGRVKFSYHAKCLPHLTGGTCLEYAPQGLLGDPPGNRSGAVW ; _struct_ref.pdbx_align_begin 21 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7PAG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 534 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P10820 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 554 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 21 _struct_ref_seq.pdbx_auth_seq_align_end 554 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7PAG HIS A 535 ? UNP P10820 ? ? 'expression tag' 555 1 1 7PAG HIS A 536 ? UNP P10820 ? ? 'expression tag' 556 2 1 7PAG HIS A 537 ? UNP P10820 ? ? 'expression tag' 557 3 1 7PAG HIS A 538 ? UNP P10820 ? ? 'expression tag' 558 4 1 7PAG HIS A 539 ? UNP P10820 ? ? 'expression tag' 559 5 1 7PAG HIS A 540 ? UNP P10820 ? ? 'expression tag' 560 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7PAG _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7PAG _struct.title 'The pore conformation of lymphocyte perforin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7PAG _struct_keywords.text 'Pore forming protein perforin, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 19 ? ALA A 23 ? GLY A 39 ALA A 43 5 ? 5 HELX_P HELX_P2 AA2 HIS A 169 ? LEU A 179 ? HIS A 189 LEU A 199 1 ? 11 HELX_P HELX_P3 AA3 ASN A 184 ? GLY A 199 ? ASN A 204 GLY A 219 1 ? 16 HELX_P HELX_P4 AA4 ASP A 288 ? ASP A 292 ? ASP A 308 ASP A 312 5 ? 5 HELX_P HELX_P5 AA5 THR A 300 ? LEU A 311 ? THR A 320 LEU A 331 1 ? 12 HELX_P HELX_P6 AA6 PRO A 312 ? ASN A 314 ? PRO A 332 ASN A 334 5 ? 3 HELX_P HELX_P7 AA7 HIS A 326 ? LEU A 329 ? HIS A 346 LEU A 349 5 ? 4 HELX_P HELX_P8 AA8 ASN A 333 ? LYS A 335 ? ASN A 353 LYS A 355 5 ? 3 HELX_P HELX_P9 AA9 ARG A 336 ? TRP A 353 ? ARG A 356 TRP A 373 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 55 SG ? ? A CYS 22 A CYS 75 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 52 SG ? ? A CYS 30 A CYS 72 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 221 SG ? ? ? 1_555 A CYS 387 SG ? ? A CYS 241 A CYS 407 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf4 disulf ? ? A CYS 236 SG ? ? ? 1_555 A CYS 258 SG ? ? A CYS 256 A CYS 278 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf5 disulf ? ? A CYS 356 SG ? ? ? 1_555 A CYS 372 SG ? ? A CYS 376 A CYS 392 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf6 disulf ? ? A CYS 360 SG ? ? ? 1_555 A CYS 374 SG ? ? A CYS 380 A CYS 394 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf7 disulf ? ? A CYS 376 SG ? ? ? 1_555 A CYS 386 SG ? ? A CYS 396 A CYS 406 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf8 disulf ? ? A CYS 476 SG ? ? ? 1_555 A CYS 489 SG ? ? A CYS 496 A CYS 509 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf9 disulf ? ? A CYS 504 SG ? ? ? 1_555 A CYS 513 SG ? ? A CYS 524 A CYS 533 1_555 ? ? ? ? ? ? ? 2.027 ? ? covale1 covale one ? A ASN 184 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 204 A NAG 604 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation metalc1 metalc ? ? A GLY 408 O ? ? ? 1_555 D CA . CA ? ? A GLY 428 A CA 603 1_555 ? ? ? ? ? ? ? 2.574 ? ? metalc2 metalc ? ? A ASP 409 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 429 A CA 601 1_555 ? ? ? ? ? ? ? 2.451 ? ? metalc3 metalc ? ? A ASP 409 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 429 A CA 602 1_555 ? ? ? ? ? ? ? 2.463 ? ? metalc4 metalc ? ? A THR 412 OG1 ? ? ? 1_555 B CA . CA ? ? A THR 432 A CA 601 1_555 ? ? ? ? ? ? ? 2.702 ? ? metalc5 metalc ? ? A ALA 413 O ? ? ? 1_555 B CA . CA ? ? A ALA 433 A CA 601 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc6 metalc ? ? A ASP 415 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 435 A CA 601 1_555 ? ? ? ? ? ? ? 3.124 ? ? metalc7 metalc ? ? A ASP 415 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 435 A CA 601 1_555 ? ? ? ? ? ? ? 2.492 ? ? metalc8 metalc ? ? A ASP 415 O ? ? ? 1_555 C CA . CA ? ? A ASP 435 A CA 602 1_555 ? ? ? ? ? ? ? 2.586 ? ? metalc9 metalc ? ? A ASN 434 OD1 ? ? ? 1_555 B CA . CA ? ? A ASN 454 A CA 601 1_555 ? ? ? ? ? ? ? 2.411 ? ? metalc10 metalc ? ? A ASP 463 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 483 A CA 602 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc11 metalc ? ? A ASP 463 OD2 ? ? ? 1_555 C CA . CA ? ? A ASP 483 A CA 602 1_555 ? ? ? ? ? ? ? 3.068 ? ? metalc12 metalc ? ? A ASP 463 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 483 A CA 603 1_555 ? ? ? ? ? ? ? 3.108 ? ? metalc13 metalc ? ? A ALA 464 O ? ? ? 1_555 C CA . CA ? ? A ALA 484 A CA 602 1_555 ? ? ? ? ? ? ? 2.379 ? ? metalc14 metalc ? ? A ASP 465 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 485 A CA 603 1_555 ? ? ? ? ? ? ? 2.512 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 4 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 3 ? AA6 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 26 ? MET A 27 ? GLY A 46 MET A 47 AA1 2 HIS A 201 ? ILE A 245 ? HIS A 221 ILE A 265 AA1 3 ALA A 249 ? VAL A 282 ? ALA A 269 VAL A 302 AA2 1 ARG A 75 ? VAL A 114 ? ARG A 95 VAL A 134 AA2 2 MET A 122 ? ARG A 161 ? MET A 142 ARG A 181 AA2 3 HIS A 201 ? ILE A 245 ? HIS A 221 ILE A 265 AA2 4 ASP A 319 ? PRO A 324 ? ASP A 339 PRO A 344 AA3 1 THR A 53 ? LYS A 56 ? THR A 73 LYS A 76 AA3 2 THR A 64 ? LEU A 67 ? THR A 84 LEU A 87 AA4 1 ARG A 439 ? TRP A 440 ? ARG A 459 TRP A 460 AA4 2 LEU A 393 ? GLU A 404 ? LEU A 413 GLU A 424 AA4 3 ARG A 495 ? HIS A 501 ? ARG A 515 HIS A 521 AA4 4 PHE A 484 ? GLU A 490 ? PHE A 504 GLU A 510 AA5 1 MET A 444 ? LEU A 450 ? MET A 464 LEU A 470 AA5 2 LEU A 393 ? GLU A 404 ? LEU A 413 GLU A 424 AA5 3 LYS A 503 ? CYS A 504 ? LYS A 523 CYS A 524 AA6 1 GLN A 425 ? ARG A 428 ? GLN A 445 ARG A 448 AA6 2 ALA A 416 ? PHE A 422 ? ALA A 436 PHE A 442 AA6 3 LEU A 457 ? ASP A 463 ? LEU A 477 ASP A 483 AA6 4 ASP A 471 ? ARG A 478 ? ASP A 491 ARG A 498 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N MET A 27 ? N MET A 47 O HIS A 201 ? O HIS A 221 AA1 2 3 N VAL A 239 ? N VAL A 259 O TYR A 255 ? O TYR A 275 AA2 1 2 N TRP A 108 ? N TRP A 128 O GLY A 128 ? O GLY A 148 AA2 2 3 N TYR A 158 ? N TYR A 178 O LEU A 208 ? O LEU A 228 AA2 3 4 N THR A 204 ? N THR A 224 O SER A 321 ? O SER A 341 AA3 1 2 N CYS A 55 ? N CYS A 75 O GLN A 65 ? O GLN A 85 AA4 1 2 O TRP A 440 ? O TRP A 460 N PHE A 401 ? N PHE A 421 AA4 2 3 N GLU A 404 ? N GLU A 424 O ARG A 495 ? O ARG A 515 AA4 3 4 O VAL A 496 ? O VAL A 516 N CYS A 489 ? N CYS A 509 AA5 1 2 O VAL A 449 ? O VAL A 469 N ALA A 394 ? N ALA A 414 AA5 2 3 N HIS A 395 ? N HIS A 415 O LYS A 503 ? O LYS A 523 AA6 1 2 O PHE A 427 ? O PHE A 447 N VAL A 420 ? N VAL A 440 AA6 2 3 N TYR A 417 ? N TYR A 437 O TRP A 462 ? O TRP A 482 AA6 3 4 N ASP A 463 ? N ASP A 483 O ASP A 471 ? O ASP A 491 # _atom_sites.entry_id 7PAG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 21 21 PRO PRO A . n A 1 2 CYS 2 22 22 CYS CYS A . n A 1 3 TYR 3 23 23 TYR TYR A . n A 1 4 THR 4 24 24 THR THR A . n A 1 5 ALA 5 25 25 ALA ALA A . n A 1 6 THR 6 26 26 THR THR A . n A 1 7 ARG 7 27 27 ARG ARG A . n A 1 8 SER 8 28 28 SER SER A . n A 1 9 GLU 9 29 29 GLU GLU A . n A 1 10 CYS 10 30 30 CYS CYS A . n A 1 11 LYS 11 31 31 LYS LYS A . n A 1 12 GLN 12 32 32 GLN GLN A . n A 1 13 LYS 13 33 33 LYS LYS A . n A 1 14 HIS 14 34 34 HIS HIS A . n A 1 15 LYS 15 35 35 LYS LYS A . n A 1 16 PHE 16 36 36 PHE PHE A . n A 1 17 VAL 17 37 37 VAL VAL A . n A 1 18 PRO 18 38 38 PRO PRO A . n A 1 19 GLY 19 39 39 GLY GLY A . n A 1 20 VAL 20 40 40 VAL VAL A . n A 1 21 TRP 21 41 41 TRP TRP A . n A 1 22 MET 22 42 42 MET MET A . n A 1 23 ALA 23 43 43 ALA ALA A . n A 1 24 GLY 24 44 44 GLY GLY A . n A 1 25 GLU 25 45 45 GLU GLU A . n A 1 26 GLY 26 46 46 GLY GLY A . n A 1 27 MET 27 47 47 MET MET A . n A 1 28 ASP 28 48 48 ASP ASP A . n A 1 29 VAL 29 49 49 VAL VAL A . n A 1 30 THR 30 50 50 THR THR A . n A 1 31 THR 31 51 51 THR THR A . n A 1 32 LEU 32 52 52 LEU LEU A . n A 1 33 ARG 33 53 53 ARG ARG A . n A 1 34 ARG 34 54 54 ARG ARG A . n A 1 35 SER 35 55 55 SER SER A . n A 1 36 GLY 36 56 56 GLY GLY A . n A 1 37 SER 37 57 57 SER SER A . n A 1 38 PHE 38 58 58 PHE PHE A . n A 1 39 PRO 39 59 59 PRO PRO A . n A 1 40 VAL 40 60 60 VAL VAL A . n A 1 41 ASN 41 61 61 ASN ASN A . n A 1 42 THR 42 62 62 THR THR A . n A 1 43 GLN 43 63 63 GLN GLN A . n A 1 44 ARG 44 64 64 ARG ARG A . n A 1 45 PHE 45 65 65 PHE PHE A . n A 1 46 LEU 46 66 66 LEU LEU A . n A 1 47 ARG 47 67 67 ARG ARG A . n A 1 48 PRO 48 68 68 PRO PRO A . n A 1 49 ASP 49 69 69 ASP ASP A . n A 1 50 ARG 50 70 70 ARG ARG A . n A 1 51 THR 51 71 71 THR THR A . n A 1 52 CYS 52 72 72 CYS CYS A . n A 1 53 THR 53 73 73 THR THR A . n A 1 54 LEU 54 74 74 LEU LEU A . n A 1 55 CYS 55 75 75 CYS CYS A . n A 1 56 LYS 56 76 76 LYS LYS A . n A 1 57 ASN 57 77 77 ASN ASN A . n A 1 58 SER 58 78 78 SER SER A . n A 1 59 LEU 59 79 79 LEU LEU A . n A 1 60 MET 60 80 80 MET MET A . n A 1 61 ARG 61 81 81 ARG ARG A . n A 1 62 ASP 62 82 82 ASP ASP A . n A 1 63 ALA 63 83 83 ALA ALA A . n A 1 64 THR 64 84 84 THR THR A . n A 1 65 GLN 65 85 85 GLN GLN A . n A 1 66 ARG 66 86 86 ARG ARG A . n A 1 67 LEU 67 87 87 LEU LEU A . n A 1 68 PRO 68 88 88 PRO PRO A . n A 1 69 VAL 69 89 89 VAL VAL A . n A 1 70 ALA 70 90 90 ALA ALA A . n A 1 71 ILE 71 91 91 ILE ILE A . n A 1 72 THR 72 92 92 THR THR A . n A 1 73 HIS 73 93 93 HIS HIS A . n A 1 74 TRP 74 94 94 TRP TRP A . n A 1 75 ARG 75 95 95 ARG ARG A . n A 1 76 PRO 76 96 96 PRO PRO A . n A 1 77 HIS 77 97 97 HIS HIS A . n A 1 78 SER 78 98 98 SER SER A . n A 1 79 SER 79 99 99 SER SER A . n A 1 80 HIS 80 100 100 HIS HIS A . n A 1 81 CYS 81 101 101 CYS CYS A . n A 1 82 GLN 82 102 102 GLN GLN A . n A 1 83 ARG 83 103 103 ARG ARG A . n A 1 84 ASN 84 104 104 ASN ASN A . n A 1 85 VAL 85 105 105 VAL VAL A . n A 1 86 ALA 86 106 106 ALA ALA A . n A 1 87 ALA 87 107 107 ALA ALA A . n A 1 88 ALA 88 108 108 ALA ALA A . n A 1 89 LYS 89 109 109 LYS LYS A . n A 1 90 VAL 90 110 110 VAL VAL A . n A 1 91 HIS 91 111 111 HIS HIS A . n A 1 92 SER 92 112 112 SER SER A . n A 1 93 THR 93 113 113 THR THR A . n A 1 94 GLU 94 114 114 GLU GLU A . n A 1 95 GLY 95 115 115 GLY GLY A . n A 1 96 VAL 96 116 116 VAL VAL A . n A 1 97 ALA 97 117 117 ALA ALA A . n A 1 98 ARG 98 118 118 ARG ARG A . n A 1 99 GLU 99 119 119 GLU GLU A . n A 1 100 ALA 100 120 120 ALA ALA A . n A 1 101 ALA 101 121 121 ALA ALA A . n A 1 102 ALA 102 122 122 ALA ALA A . n A 1 103 ASN 103 123 123 ASN ASN A . n A 1 104 ILE 104 124 124 ILE ILE A . n A 1 105 ASN 105 125 125 ASN ASN A . n A 1 106 ASN 106 126 126 ASN ASN A . n A 1 107 ASP 107 127 127 ASP ASP A . n A 1 108 TRP 108 128 128 TRP TRP A . n A 1 109 ARG 109 129 129 ARG ARG A . n A 1 110 VAL 110 130 130 VAL VAL A . n A 1 111 GLY 111 131 131 GLY GLY A . n A 1 112 LEU 112 132 132 LEU LEU A . n A 1 113 ASP 113 133 133 ASP ASP A . n A 1 114 VAL 114 134 134 VAL VAL A . n A 1 115 ASN 115 135 135 ASN ASN A . n A 1 116 PRO 116 136 136 PRO PRO A . n A 1 117 ARG 117 137 137 ARG ARG A . n A 1 118 PRO 118 138 138 PRO PRO A . n A 1 119 GLU 119 139 139 GLU GLU A . n A 1 120 ALA 120 140 140 ALA ALA A . n A 1 121 ASN 121 141 141 ASN ASN A . n A 1 122 MET 122 142 142 MET MET A . n A 1 123 ARG 123 143 143 ARG ARG A . n A 1 124 ALA 124 144 144 ALA ALA A . n A 1 125 SER 125 145 145 SER SER A . n A 1 126 VAL 126 146 146 VAL VAL A . n A 1 127 ALA 127 147 147 ALA ALA A . n A 1 128 GLY 128 148 148 GLY GLY A . n A 1 129 SER 129 149 149 SER SER A . n A 1 130 HIS 130 150 150 HIS HIS A . n A 1 131 SER 131 151 151 SER SER A . n A 1 132 LYS 132 152 152 LYS LYS A . n A 1 133 VAL 133 153 153 VAL VAL A . n A 1 134 ALA 134 154 154 ALA ALA A . n A 1 135 ASN 135 155 155 ASN ASN A . n A 1 136 PHE 136 156 156 PHE PHE A . n A 1 137 ALA 137 157 157 ALA ALA A . n A 1 138 ALA 138 158 158 ALA ALA A . n A 1 139 GLU 139 159 159 GLU GLU A . n A 1 140 LYS 140 160 160 LYS LYS A . n A 1 141 THR 141 161 161 THR THR A . n A 1 142 TYR 142 162 162 TYR TYR A . n A 1 143 GLN 143 163 163 GLN GLN A . n A 1 144 ASP 144 164 164 ASP ASP A . n A 1 145 GLN 145 165 165 GLN GLN A . n A 1 146 TYR 146 166 166 TYR TYR A . n A 1 147 ASN 147 167 167 ASN ASN A . n A 1 148 PHE 148 168 168 PHE PHE A . n A 1 149 ASN 149 169 169 ASN ASN A . n A 1 150 SER 150 170 170 SER SER A . n A 1 151 ASP 151 171 171 ASP ASP A . n A 1 152 THR 152 172 172 THR THR A . n A 1 153 VAL 153 173 173 VAL VAL A . n A 1 154 GLU 154 174 174 GLU GLU A . n A 1 155 CYS 155 175 175 CYS CYS A . n A 1 156 ARG 156 176 176 ARG ARG A . n A 1 157 MET 157 177 177 MET MET A . n A 1 158 TYR 158 178 178 TYR TYR A . n A 1 159 SER 159 179 179 SER SER A . n A 1 160 PHE 160 180 180 PHE PHE A . n A 1 161 ARG 161 181 181 ARG ARG A . n A 1 162 LEU 162 182 182 LEU LEU A . n A 1 163 VAL 163 183 183 VAL VAL A . n A 1 164 GLN 164 184 184 GLN GLN A . n A 1 165 LYS 165 185 185 LYS LYS A . n A 1 166 PRO 166 186 186 PRO PRO A . n A 1 167 PRO 167 187 187 PRO PRO A . n A 1 168 LEU 168 188 188 LEU LEU A . n A 1 169 HIS 169 189 189 HIS HIS A . n A 1 170 LEU 170 190 190 LEU LEU A . n A 1 171 ASP 171 191 191 ASP ASP A . n A 1 172 PHE 172 192 192 PHE PHE A . n A 1 173 LYS 173 193 193 LYS LYS A . n A 1 174 LYS 174 194 194 LYS LYS A . n A 1 175 ALA 175 195 195 ALA ALA A . n A 1 176 LEU 176 196 196 LEU LEU A . n A 1 177 ARG 177 197 197 ARG ARG A . n A 1 178 ALA 178 198 198 ALA ALA A . n A 1 179 LEU 179 199 199 LEU LEU A . n A 1 180 PRO 180 200 200 PRO PRO A . n A 1 181 ARG 181 201 201 ARG ARG A . n A 1 182 ASN 182 202 202 ASN ASN A . n A 1 183 PHE 183 203 203 PHE PHE A . n A 1 184 ASN 184 204 204 ASN ASN A . n A 1 185 SER 185 205 205 SER SER A . n A 1 186 SER 186 206 206 SER SER A . n A 1 187 THR 187 207 207 THR THR A . n A 1 188 GLU 188 208 208 GLU GLU A . n A 1 189 HIS 189 209 209 HIS HIS A . n A 1 190 ALA 190 210 210 ALA ALA A . n A 1 191 TYR 191 211 211 TYR TYR A . n A 1 192 HIS 192 212 212 HIS HIS A . n A 1 193 ARG 193 213 213 ARG ARG A . n A 1 194 LEU 194 214 214 LEU LEU A . n A 1 195 ILE 195 215 215 ILE ILE A . n A 1 196 SER 196 216 216 SER SER A . n A 1 197 SER 197 217 217 SER SER A . n A 1 198 TYR 198 218 218 TYR TYR A . n A 1 199 GLY 199 219 219 GLY GLY A . n A 1 200 THR 200 220 220 THR THR A . n A 1 201 HIS 201 221 221 HIS HIS A . n A 1 202 PHE 202 222 222 PHE PHE A . n A 1 203 ILE 203 223 223 ILE ILE A . n A 1 204 THR 204 224 224 THR THR A . n A 1 205 ALA 205 225 225 ALA ALA A . n A 1 206 VAL 206 226 226 VAL VAL A . n A 1 207 ASP 207 227 227 ASP ASP A . n A 1 208 LEU 208 228 228 LEU LEU A . n A 1 209 GLY 209 229 229 GLY GLY A . n A 1 210 GLY 210 230 230 GLY GLY A . n A 1 211 ARG 211 231 231 ARG ARG A . n A 1 212 ILE 212 232 232 ILE ILE A . n A 1 213 SER 213 233 233 SER SER A . n A 1 214 VAL 214 234 234 VAL VAL A . n A 1 215 LEU 215 235 235 LEU LEU A . n A 1 216 THR 216 236 236 THR THR A . n A 1 217 ALA 217 237 237 ALA ALA A . n A 1 218 LEU 218 238 238 LEU LEU A . n A 1 219 ARG 219 239 239 ARG ARG A . n A 1 220 THR 220 240 240 THR THR A . n A 1 221 CYS 221 241 241 CYS CYS A . n A 1 222 GLN 222 242 242 GLN GLN A . n A 1 223 LEU 223 243 243 LEU LEU A . n A 1 224 THR 224 244 244 THR THR A . n A 1 225 LEU 225 245 245 LEU LEU A . n A 1 226 ASN 226 246 246 ASN ASN A . n A 1 227 GLY 227 247 247 GLY GLY A . n A 1 228 LEU 228 248 248 LEU LEU A . n A 1 229 THR 229 249 249 THR THR A . n A 1 230 ALA 230 250 250 ALA ALA A . n A 1 231 ASP 231 251 251 ASP ASP A . n A 1 232 GLU 232 252 252 GLU GLU A . n A 1 233 VAL 233 253 253 VAL VAL A . n A 1 234 GLY 234 254 254 GLY GLY A . n A 1 235 ASP 235 255 255 ASP ASP A . n A 1 236 CYS 236 256 256 CYS CYS A . n A 1 237 LEU 237 257 257 LEU LEU A . n A 1 238 ASN 238 258 258 ASN ASN A . n A 1 239 VAL 239 259 259 VAL VAL A . n A 1 240 GLU 240 260 260 GLU GLU A . n A 1 241 ALA 241 261 261 ALA ALA A . n A 1 242 GLN 242 262 262 GLN GLN A . n A 1 243 VAL 243 263 263 VAL VAL A . n A 1 244 SER 244 264 264 SER SER A . n A 1 245 ILE 245 265 265 ILE ILE A . n A 1 246 GLY 246 266 266 GLY GLY A . n A 1 247 ALA 247 267 267 ALA ALA A . n A 1 248 GLN 248 268 268 GLN GLN A . n A 1 249 ALA 249 269 269 ALA ALA A . n A 1 250 SER 250 270 270 SER SER A . n A 1 251 VAL 251 271 271 VAL VAL A . n A 1 252 SER 252 272 272 SER SER A . n A 1 253 SER 253 273 273 SER SER A . n A 1 254 GLU 254 274 274 GLU GLU A . n A 1 255 TYR 255 275 275 TYR TYR A . n A 1 256 LYS 256 276 276 LYS LYS A . n A 1 257 ALA 257 277 277 ALA ALA A . n A 1 258 CYS 258 278 278 CYS CYS A . n A 1 259 GLU 259 279 279 GLU GLU A . n A 1 260 GLU 260 280 280 GLU GLU A . n A 1 261 LYS 261 281 281 LYS LYS A . n A 1 262 LYS 262 282 282 LYS LYS A . n A 1 263 LYS 263 283 283 LYS LYS A . n A 1 264 GLN 264 284 284 GLN GLN A . n A 1 265 HIS 265 285 285 HIS HIS A . n A 1 266 LYS 266 286 286 LYS LYS A . n A 1 267 MET 267 287 287 MET MET A . n A 1 268 ALA 268 288 288 ALA ALA A . n A 1 269 THR 269 289 289 THR THR A . n A 1 270 SER 270 290 290 SER SER A . n A 1 271 PHE 271 291 291 PHE PHE A . n A 1 272 HIS 272 292 292 HIS HIS A . n A 1 273 GLN 273 293 293 GLN GLN A . n A 1 274 THR 274 294 294 THR THR A . n A 1 275 TYR 275 295 295 TYR TYR A . n A 1 276 ARG 276 296 296 ARG ARG A . n A 1 277 GLU 277 297 297 GLU GLU A . n A 1 278 ARG 278 298 298 ARG ARG A . n A 1 279 HIS 279 299 299 HIS HIS A . n A 1 280 VAL 280 300 300 VAL VAL A . n A 1 281 GLU 281 301 301 GLU GLU A . n A 1 282 VAL 282 302 302 VAL VAL A . n A 1 283 LEU 283 303 303 LEU LEU A . n A 1 284 GLY 284 304 304 GLY GLY A . n A 1 285 GLY 285 305 305 GLY GLY A . n A 1 286 PRO 286 306 306 PRO PRO A . n A 1 287 LEU 287 307 307 LEU LEU A . n A 1 288 ASP 288 308 308 ASP ASP A . n A 1 289 SER 289 309 309 SER SER A . n A 1 290 THR 290 310 310 THR THR A . n A 1 291 HIS 291 311 311 HIS HIS A . n A 1 292 ASP 292 312 312 ASP ASP A . n A 1 293 LEU 293 313 313 LEU LEU A . n A 1 294 LEU 294 314 314 LEU LEU A . n A 1 295 PHE 295 315 315 PHE PHE A . n A 1 296 GLY 296 316 316 GLY GLY A . n A 1 297 ASN 297 317 317 ASN ASN A . n A 1 298 GLN 298 318 318 GLN GLN A . n A 1 299 ALA 299 319 319 ALA ALA A . n A 1 300 THR 300 320 320 THR THR A . n A 1 301 PRO 301 321 321 PRO PRO A . n A 1 302 GLU 302 322 322 GLU GLU A . n A 1 303 GLN 303 323 323 GLN GLN A . n A 1 304 PHE 304 324 324 PHE PHE A . n A 1 305 SER 305 325 325 SER SER A . n A 1 306 THR 306 326 326 THR THR A . n A 1 307 TRP 307 327 327 TRP TRP A . n A 1 308 THR 308 328 328 THR THR A . n A 1 309 ALA 309 329 329 ALA ALA A . n A 1 310 SER 310 330 330 SER SER A . n A 1 311 LEU 311 331 331 LEU LEU A . n A 1 312 PRO 312 332 332 PRO PRO A . n A 1 313 SER 313 333 333 SER SER A . n A 1 314 ASN 314 334 334 ASN ASN A . n A 1 315 PRO 315 335 335 PRO PRO A . n A 1 316 GLY 316 336 336 GLY GLY A . n A 1 317 LEU 317 337 337 LEU LEU A . n A 1 318 VAL 318 338 338 VAL VAL A . n A 1 319 ASP 319 339 339 ASP ASP A . n A 1 320 TYR 320 340 340 TYR TYR A . n A 1 321 SER 321 341 341 SER SER A . n A 1 322 LEU 322 342 342 LEU LEU A . n A 1 323 GLU 323 343 343 GLU GLU A . n A 1 324 PRO 324 344 344 PRO PRO A . n A 1 325 LEU 325 345 345 LEU LEU A . n A 1 326 HIS 326 346 346 HIS HIS A . n A 1 327 THR 327 347 347 THR THR A . n A 1 328 LEU 328 348 348 LEU LEU A . n A 1 329 LEU 329 349 349 LEU LEU A . n A 1 330 GLU 330 350 350 GLU GLU A . n A 1 331 GLU 331 351 351 GLU GLU A . n A 1 332 GLN 332 352 352 GLN GLN A . n A 1 333 ASN 333 353 353 ASN ASN A . n A 1 334 PRO 334 354 354 PRO PRO A . n A 1 335 LYS 335 355 355 LYS LYS A . n A 1 336 ARG 336 356 356 ARG ARG A . n A 1 337 GLU 337 357 357 GLU GLU A . n A 1 338 ALA 338 358 358 ALA ALA A . n A 1 339 LEU 339 359 359 LEU LEU A . n A 1 340 ARG 340 360 360 ARG ARG A . n A 1 341 GLN 341 361 361 GLN GLN A . n A 1 342 ALA 342 362 362 ALA ALA A . n A 1 343 ILE 343 363 363 ILE ILE A . n A 1 344 SER 344 364 364 SER SER A . n A 1 345 HIS 345 365 365 HIS HIS A . n A 1 346 TYR 346 366 366 TYR TYR A . n A 1 347 ILE 347 367 367 ILE ILE A . n A 1 348 MET 348 368 368 MET MET A . n A 1 349 SER 349 369 369 SER SER A . n A 1 350 ARG 350 370 370 ARG ARG A . n A 1 351 ALA 351 371 371 ALA ALA A . n A 1 352 ARG 352 372 372 ARG ARG A . n A 1 353 TRP 353 373 373 TRP TRP A . n A 1 354 GLN 354 374 374 GLN GLN A . n A 1 355 ASN 355 375 375 ASN ASN A . n A 1 356 CYS 356 376 376 CYS CYS A . n A 1 357 SER 357 377 377 SER SER A . n A 1 358 ARG 358 378 378 ARG ARG A . n A 1 359 PRO 359 379 379 PRO PRO A . n A 1 360 CYS 360 380 380 CYS CYS A . n A 1 361 ARG 361 381 ? ? ? A . n A 1 362 SER 362 382 ? ? ? A . n A 1 363 GLY 363 383 ? ? ? A . n A 1 364 GLN 364 384 ? ? ? A . n A 1 365 HIS 365 385 ? ? ? A . n A 1 366 LYS 366 386 ? ? ? A . n A 1 367 SER 367 387 ? ? ? A . n A 1 368 SER 368 388 ? ? ? A . n A 1 369 HIS 369 389 ? ? ? A . n A 1 370 ASP 370 390 ? ? ? A . n A 1 371 SER 371 391 ? ? ? A . n A 1 372 CYS 372 392 392 CYS CYS A . n A 1 373 GLN 373 393 393 GLN GLN A . n A 1 374 CYS 374 394 394 CYS CYS A . n A 1 375 GLU 375 395 395 GLU GLU A . n A 1 376 CYS 376 396 396 CYS CYS A . n A 1 377 GLN 377 397 397 GLN GLN A . n A 1 378 ASP 378 398 398 ASP ASP A . n A 1 379 SER 379 399 399 SER SER A . n A 1 380 LYS 380 400 400 LYS LYS A . n A 1 381 VAL 381 401 401 VAL VAL A . n A 1 382 THR 382 402 402 THR THR A . n A 1 383 ASN 383 403 403 ASN ASN A . n A 1 384 GLN 384 404 404 GLN GLN A . n A 1 385 ASP 385 405 405 ASP ASP A . n A 1 386 CYS 386 406 406 CYS CYS A . n A 1 387 CYS 387 407 407 CYS CYS A . n A 1 388 PRO 388 408 408 PRO PRO A . n A 1 389 ARG 389 409 409 ARG ARG A . n A 1 390 GLN 390 410 410 GLN GLN A . n A 1 391 ARG 391 411 411 ARG ARG A . n A 1 392 GLY 392 412 412 GLY GLY A . n A 1 393 LEU 393 413 413 LEU LEU A . n A 1 394 ALA 394 414 414 ALA ALA A . n A 1 395 HIS 395 415 415 HIS HIS A . n A 1 396 LEU 396 416 416 LEU LEU A . n A 1 397 VAL 397 417 417 VAL VAL A . n A 1 398 VAL 398 418 418 VAL VAL A . n A 1 399 SER 399 419 419 SER SER A . n A 1 400 ASN 400 420 420 ASN ASN A . n A 1 401 PHE 401 421 421 PHE PHE A . n A 1 402 ARG 402 422 422 ARG ARG A . n A 1 403 ALA 403 423 423 ALA ALA A . n A 1 404 GLU 404 424 424 GLU GLU A . n A 1 405 HIS 405 425 425 HIS HIS A . n A 1 406 LEU 406 426 426 LEU LEU A . n A 1 407 TRP 407 427 427 TRP TRP A . n A 1 408 GLY 408 428 428 GLY GLY A . n A 1 409 ASP 409 429 429 ASP ASP A . n A 1 410 TYR 410 430 430 TYR TYR A . n A 1 411 THR 411 431 431 THR THR A . n A 1 412 THR 412 432 432 THR THR A . n A 1 413 ALA 413 433 433 ALA ALA A . n A 1 414 THR 414 434 434 THR THR A . n A 1 415 ASP 415 435 435 ASP ASP A . n A 1 416 ALA 416 436 436 ALA ALA A . n A 1 417 TYR 417 437 437 TYR TYR A . n A 1 418 LEU 418 438 438 LEU LEU A . n A 1 419 LYS 419 439 439 LYS LYS A . n A 1 420 VAL 420 440 440 VAL VAL A . n A 1 421 PHE 421 441 441 PHE PHE A . n A 1 422 PHE 422 442 442 PHE PHE A . n A 1 423 GLY 423 443 443 GLY GLY A . n A 1 424 GLY 424 444 444 GLY GLY A . n A 1 425 GLN 425 445 445 GLN GLN A . n A 1 426 GLU 426 446 446 GLU GLU A . n A 1 427 PHE 427 447 447 PHE PHE A . n A 1 428 ARG 428 448 448 ARG ARG A . n A 1 429 THR 429 449 449 THR THR A . n A 1 430 GLY 430 450 450 GLY GLY A . n A 1 431 VAL 431 451 451 VAL VAL A . n A 1 432 VAL 432 452 452 VAL VAL A . n A 1 433 TRP 433 453 453 TRP TRP A . n A 1 434 ASN 434 454 454 ASN ASN A . n A 1 435 ASN 435 455 455 ASN ASN A . n A 1 436 ASN 436 456 456 ASN ASN A . n A 1 437 ASN 437 457 457 ASN ASN A . n A 1 438 PRO 438 458 458 PRO PRO A . n A 1 439 ARG 439 459 459 ARG ARG A . n A 1 440 TRP 440 460 460 TRP TRP A . n A 1 441 THR 441 461 461 THR THR A . n A 1 442 ASP 442 462 462 ASP ASP A . n A 1 443 LYS 443 463 463 LYS LYS A . n A 1 444 MET 444 464 464 MET MET A . n A 1 445 ASP 445 465 465 ASP ASP A . n A 1 446 PHE 446 466 466 PHE PHE A . n A 1 447 GLU 447 467 467 GLU GLU A . n A 1 448 ASN 448 468 468 ASN ASN A . n A 1 449 VAL 449 469 469 VAL VAL A . n A 1 450 LEU 450 470 470 LEU LEU A . n A 1 451 LEU 451 471 471 LEU LEU A . n A 1 452 SER 452 472 472 SER SER A . n A 1 453 THR 453 473 473 THR THR A . n A 1 454 GLY 454 474 474 GLY GLY A . n A 1 455 GLY 455 475 475 GLY GLY A . n A 1 456 PRO 456 476 476 PRO PRO A . n A 1 457 LEU 457 477 477 LEU LEU A . n A 1 458 ARG 458 478 478 ARG ARG A . n A 1 459 VAL 459 479 479 VAL VAL A . n A 1 460 GLN 460 480 480 GLN GLN A . n A 1 461 VAL 461 481 481 VAL VAL A . n A 1 462 TRP 462 482 482 TRP TRP A . n A 1 463 ASP 463 483 483 ASP ASP A . n A 1 464 ALA 464 484 484 ALA ALA A . n A 1 465 ASP 465 485 485 ASP ASP A . n A 1 466 TYR 466 486 486 TYR TYR A . n A 1 467 GLY 467 487 487 GLY GLY A . n A 1 468 TRP 468 488 488 TRP TRP A . n A 1 469 ASP 469 489 489 ASP ASP A . n A 1 470 ASP 470 490 490 ASP ASP A . n A 1 471 ASP 471 491 491 ASP ASP A . n A 1 472 LEU 472 492 492 LEU LEU A . n A 1 473 LEU 473 493 493 LEU LEU A . n A 1 474 GLY 474 494 494 GLY GLY A . n A 1 475 SER 475 495 495 SER SER A . n A 1 476 CYS 476 496 496 CYS CYS A . n A 1 477 ASP 477 497 497 ASP ASP A . n A 1 478 ARG 478 498 498 ARG ARG A . n A 1 479 SER 479 499 499 SER SER A . n A 1 480 PRO 480 500 500 PRO PRO A . n A 1 481 HIS 481 501 501 HIS HIS A . n A 1 482 SER 482 502 502 SER SER A . n A 1 483 GLY 483 503 503 GLY GLY A . n A 1 484 PHE 484 504 504 PHE PHE A . n A 1 485 HIS 485 505 505 HIS HIS A . n A 1 486 GLU 486 506 506 GLU GLU A . n A 1 487 VAL 487 507 507 VAL VAL A . n A 1 488 THR 488 508 508 THR THR A . n A 1 489 CYS 489 509 509 CYS CYS A . n A 1 490 GLU 490 510 510 GLU GLU A . n A 1 491 LEU 491 511 511 LEU LEU A . n A 1 492 ASN 492 512 512 ASN ASN A . n A 1 493 HIS 493 513 513 HIS HIS A . n A 1 494 GLY 494 514 514 GLY GLY A . n A 1 495 ARG 495 515 515 ARG ARG A . n A 1 496 VAL 496 516 516 VAL VAL A . n A 1 497 LYS 497 517 517 LYS LYS A . n A 1 498 PHE 498 518 518 PHE PHE A . n A 1 499 SER 499 519 519 SER SER A . n A 1 500 TYR 500 520 520 TYR TYR A . n A 1 501 HIS 501 521 521 HIS HIS A . n A 1 502 ALA 502 522 522 ALA ALA A . n A 1 503 LYS 503 523 523 LYS LYS A . n A 1 504 CYS 504 524 524 CYS CYS A . n A 1 505 LEU 505 525 525 LEU LEU A . n A 1 506 PRO 506 526 526 PRO PRO A . n A 1 507 HIS 507 527 527 HIS HIS A . n A 1 508 LEU 508 528 528 LEU LEU A . n A 1 509 THR 509 529 529 THR THR A . n A 1 510 GLY 510 530 530 GLY GLY A . n A 1 511 GLY 511 531 531 GLY GLY A . n A 1 512 THR 512 532 532 THR THR A . n A 1 513 CYS 513 533 533 CYS CYS A . n A 1 514 LEU 514 534 534 LEU LEU A . n A 1 515 GLU 515 535 535 GLU GLU A . n A 1 516 TYR 516 536 536 TYR TYR A . n A 1 517 ALA 517 537 537 ALA ALA A . n A 1 518 PRO 518 538 538 PRO PRO A . n A 1 519 GLN 519 539 539 GLN GLN A . n A 1 520 GLY 520 540 540 GLY GLY A . n A 1 521 LEU 521 541 ? ? ? A . n A 1 522 LEU 522 542 ? ? ? A . n A 1 523 GLY 523 543 ? ? ? A . n A 1 524 ASP 524 544 ? ? ? A . n A 1 525 PRO 525 545 ? ? ? A . n A 1 526 PRO 526 546 ? ? ? A . n A 1 527 GLY 527 547 ? ? ? A . n A 1 528 ASN 528 548 ? ? ? A . n A 1 529 ARG 529 549 ? ? ? A . n A 1 530 SER 530 550 ? ? ? A . n A 1 531 GLY 531 551 ? ? ? A . n A 1 532 ALA 532 552 ? ? ? A . n A 1 533 VAL 533 553 ? ? ? A . n A 1 534 TRP 534 554 ? ? ? A . n A 1 535 HIS 535 555 ? ? ? A . n A 1 536 HIS 536 556 ? ? ? A . n A 1 537 HIS 537 557 ? ? ? A . n A 1 538 HIS 538 558 ? ? ? A . n A 1 539 HIS 539 559 ? ? ? A . n A 1 540 HIS 540 560 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 601 601 CA CA A . C 2 CA 1 602 602 CA CA A . D 2 CA 1 603 603 CA CA A . E 3 NAG 1 604 1 NAG NAG A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 410 ? 1 MORE -22 ? 1 'SSA (A^2)' 31220 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLY 408 ? A GLY 428 ? 1_555 CA ? D CA . ? A CA 603 ? 1_555 OD2 ? A ASP 463 ? A ASP 483 ? 1_555 67.4 ? 2 O ? A GLY 408 ? A GLY 428 ? 1_555 CA ? D CA . ? A CA 603 ? 1_555 OD2 ? A ASP 465 ? A ASP 485 ? 1_555 122.5 ? 3 OD2 ? A ASP 463 ? A ASP 483 ? 1_555 CA ? D CA . ? A CA 603 ? 1_555 OD2 ? A ASP 465 ? A ASP 485 ? 1_555 60.2 ? 4 OD2 ? A ASP 409 ? A ASP 429 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OG1 ? A THR 412 ? A THR 432 ? 1_555 79.1 ? 5 OD2 ? A ASP 409 ? A ASP 429 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 O ? A ALA 413 ? A ALA 433 ? 1_555 66.5 ? 6 OG1 ? A THR 412 ? A THR 432 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 O ? A ALA 413 ? A ALA 433 ? 1_555 88.4 ? 7 OD2 ? A ASP 409 ? A ASP 429 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OD1 ? A ASP 415 ? A ASP 435 ? 1_555 83.7 ? 8 OG1 ? A THR 412 ? A THR 432 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OD1 ? A ASP 415 ? A ASP 435 ? 1_555 162.0 ? 9 O ? A ALA 413 ? A ALA 433 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OD1 ? A ASP 415 ? A ASP 435 ? 1_555 79.9 ? 10 OD2 ? A ASP 409 ? A ASP 429 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OD2 ? A ASP 415 ? A ASP 435 ? 1_555 68.3 ? 11 OG1 ? A THR 412 ? A THR 432 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OD2 ? A ASP 415 ? A ASP 435 ? 1_555 130.7 ? 12 O ? A ALA 413 ? A ALA 433 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OD2 ? A ASP 415 ? A ASP 435 ? 1_555 109.7 ? 13 OD1 ? A ASP 415 ? A ASP 435 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OD2 ? A ASP 415 ? A ASP 435 ? 1_555 44.2 ? 14 OD2 ? A ASP 409 ? A ASP 429 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OD1 ? A ASN 434 ? A ASN 454 ? 1_555 161.0 ? 15 OG1 ? A THR 412 ? A THR 432 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OD1 ? A ASN 434 ? A ASN 454 ? 1_555 111.9 ? 16 O ? A ALA 413 ? A ALA 433 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OD1 ? A ASN 434 ? A ASN 454 ? 1_555 97.5 ? 17 OD1 ? A ASP 415 ? A ASP 435 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OD1 ? A ASN 434 ? A ASN 454 ? 1_555 83.4 ? 18 OD2 ? A ASP 415 ? A ASP 435 ? 1_555 CA ? B CA . ? A CA 601 ? 1_555 OD1 ? A ASN 434 ? A ASN 454 ? 1_555 110.5 ? 19 OD1 ? A ASP 409 ? A ASP 429 ? 1_555 CA ? C CA . ? A CA 602 ? 1_555 O ? A ASP 415 ? A ASP 435 ? 1_555 135.4 ? 20 OD1 ? A ASP 409 ? A ASP 429 ? 1_555 CA ? C CA . ? A CA 602 ? 1_555 OD1 ? A ASP 463 ? A ASP 483 ? 1_555 73.5 ? 21 O ? A ASP 415 ? A ASP 435 ? 1_555 CA ? C CA . ? A CA 602 ? 1_555 OD1 ? A ASP 463 ? A ASP 483 ? 1_555 70.6 ? 22 OD1 ? A ASP 409 ? A ASP 429 ? 1_555 CA ? C CA . ? A CA 602 ? 1_555 OD2 ? A ASP 463 ? A ASP 483 ? 1_555 60.9 ? 23 O ? A ASP 415 ? A ASP 435 ? 1_555 CA ? C CA . ? A CA 602 ? 1_555 OD2 ? A ASP 463 ? A ASP 483 ? 1_555 107.2 ? 24 OD1 ? A ASP 463 ? A ASP 483 ? 1_555 CA ? C CA . ? A CA 602 ? 1_555 OD2 ? A ASP 463 ? A ASP 483 ? 1_555 45.4 ? 25 OD1 ? A ASP 409 ? A ASP 429 ? 1_555 CA ? C CA . ? A CA 602 ? 1_555 O ? A ALA 464 ? A ALA 484 ? 1_555 114.1 ? 26 O ? A ASP 415 ? A ASP 435 ? 1_555 CA ? C CA . ? A CA 602 ? 1_555 O ? A ALA 464 ? A ALA 484 ? 1_555 110.1 ? 27 OD1 ? A ASP 463 ? A ASP 483 ? 1_555 CA ? C CA . ? A CA 602 ? 1_555 O ? A ALA 464 ? A ALA 484 ? 1_555 151.5 ? 28 OD2 ? A ASP 463 ? A ASP 483 ? 1_555 CA ? C CA . ? A CA 602 ? 1_555 O ? A ALA 464 ? A ALA 484 ? 1_555 112.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-16 2 'Structure model' 1 1 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_entry_details.entry_id 7PAG _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7PAG _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7PAG _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details '229,789 particles were symmetry expanded with C22 symmetry giving the final number of particles 5,055,358' _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 229789 _em_3d_reconstruction.resolution 4.0 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Oligomerised mouse Perforin in its inserted state' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7PAG _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'UltrAuFoil R2/2' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7PAG _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7PAG _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG1 A THR 320 ? ? OE1 A GLN 323 ? ? 2.18 2 1 O A TYR 366 ? ? OG A SER 369 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 30 ? ? -99.02 36.50 2 1 ARG A 81 ? ? 40.35 -131.13 3 1 ASP A 82 ? ? -142.24 34.51 4 1 PRO A 200 ? ? -67.27 -179.54 5 1 ALA A 269 ? ? -164.65 115.65 6 1 PRO A 306 ? ? -87.93 49.21 7 1 LEU A 307 ? ? 59.83 17.98 8 1 LYS A 355 ? ? -68.33 1.73 9 1 ARG A 372 ? ? -90.05 -62.00 10 1 THR A 402 ? ? 52.41 -151.64 11 1 ASP A 405 ? ? 51.94 -137.99 12 1 ASN A 457 ? ? -156.46 59.71 13 1 GLU A 467 ? ? 54.51 -134.22 14 1 PHE A 518 ? ? -162.74 -169.93 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 381 ? A ARG 361 2 1 Y 1 A SER 382 ? A SER 362 3 1 Y 1 A GLY 383 ? A GLY 363 4 1 Y 1 A GLN 384 ? A GLN 364 5 1 Y 1 A HIS 385 ? A HIS 365 6 1 Y 1 A LYS 386 ? A LYS 366 7 1 Y 1 A SER 387 ? A SER 367 8 1 Y 1 A SER 388 ? A SER 368 9 1 Y 1 A HIS 389 ? A HIS 369 10 1 Y 1 A ASP 390 ? A ASP 370 11 1 Y 1 A SER 391 ? A SER 371 12 1 Y 1 A LEU 541 ? A LEU 521 13 1 Y 1 A LEU 542 ? A LEU 522 14 1 Y 1 A GLY 543 ? A GLY 523 15 1 Y 1 A ASP 544 ? A ASP 524 16 1 Y 1 A PRO 545 ? A PRO 525 17 1 Y 1 A PRO 546 ? A PRO 526 18 1 Y 1 A GLY 547 ? A GLY 527 19 1 Y 1 A ASN 548 ? A ASN 528 20 1 Y 1 A ARG 549 ? A ARG 529 21 1 Y 1 A SER 550 ? A SER 530 22 1 Y 1 A GLY 551 ? A GLY 531 23 1 Y 1 A ALA 552 ? A ALA 532 24 1 Y 1 A VAL 553 ? A VAL 533 25 1 Y 1 A TRP 554 ? A TRP 534 26 1 Y 1 A HIS 555 ? A HIS 535 27 1 Y 1 A HIS 556 ? A HIS 536 28 1 Y 1 A HIS 557 ? A HIS 537 29 1 Y 1 A HIS 558 ? A HIS 538 30 1 Y 1 A HIS 559 ? A HIS 539 31 1 Y 1 A HIS 560 ? A HIS 540 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 10090 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Mus musculus' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 7108 _em_entity_assembly_recombinant.organism 'Spodoptera frugiperda' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 49.6 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Wellcome Trust' 'United Kingdom' 106249/Z/14/Z 1 'Wellcome Trust' 'United Kingdom' 209250/Z/17/Z 2 'Wellcome Trust' 'United Kingdom' 208398/Z/17/Z 3 'European Research Council (ERC)' 'United Kingdom' 294408 4 'Wellcome Trust' 'United Kingdom' 202679/Z/16/Z 5 'Wellcome Trust' 'United Kingdom' 206166/Z/17/Z 6 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'assay for oligomerization' 'Monomeric perforin oligomerises into arcs and rings on the membrane in the presence of Ca2+ at 37 degrees' 2 1 'electron microscopy' 'Negative stain EM was performed to confirm the presence of perforin oligomers' #