HEADER PEPTIDE BINDING PROTEIN 03-AUG-21 7PC8 TITLE THE PDZ DOMAIN OF SNTG1 COMPLEXED WITH THE PHOSPHOMIMETIC MUTANT PDZ- TITLE 2 BINDING MOTIF OF RSK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-1-SYNTROPHIN,ANNEXIN A2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: G1SYN,SYNTROPHIN-4,SYN4,ANNEXIN II,ANNEXIN-2,CALPACTIN I COMPND 5 HEAVY CHAIN,CALPACTIN-1 HEAVY CHAIN,CHROMOBINDIN-8,LIPOCORTIN II, COMPND 6 PLACENTAL ANTICOAGULANT PROTEIN IV,PAP-IV,PROTEIN I,P36; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RIBOSOMAL PROTEIN S6 KINASE ALPHA-1; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: S6K-ALPHA-1,90 KDA RIBOSOMAL PROTEIN S6 KINASE 1,P90-RSK 1, COMPND 12 P90RSK1,P90S6K,MAP KINASE-ACTIVATED PROTEIN KINASE 1A,MAPK-ACTIVATED COMPND 13 PROTEIN KINASE 1A,MAPKAP KINASE 1A,MAPKAPK-1A,RIBOSOMAL S6 KINASE 1, COMPND 14 RSK-1; COMPND 15 EC: 2.7.11.1; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: N-TERMINAL BIOTIN-TTDS (TRIOXATRIDECAN-SUCCINAMIC COMPND 18 ACID) LABEL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SNTG1, ANXA2, ANX2, ANX2L4, CAL1H, LPC2D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PDZ, COMPLEX, CRYSTALLIZATION CHAPERONE, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.COUSIDO-SIAH,G.TRAVE,G.GOGL REVDAT 2 31-JAN-24 7PC8 1 REMARK REVDAT 1 20-APR-22 7PC8 0 JRNL AUTH A.COUSIDO-SIAH,L.CARNEIRO,C.KOSTMANN,P.ECSEDI,L.NYITRAY, JRNL AUTH 2 G.TRAVE,G.GOGL JRNL TITL A SCALABLE STRATEGY TO SOLVE STRUCTURES OF PDZ DOMAINS AND JRNL TITL 2 THEIR COMPLEXES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 78 509 2022 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 35362473 JRNL DOI 10.1107/S2059798322001784 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3340 - 6.5466 1.00 2859 151 0.1670 0.1673 REMARK 3 2 6.5466 - 5.1982 1.00 2792 147 0.2073 0.2269 REMARK 3 3 5.1982 - 4.5417 1.00 2753 145 0.1687 0.2002 REMARK 3 4 4.5417 - 4.1267 1.00 2740 144 0.1604 0.1655 REMARK 3 5 4.1267 - 3.8310 1.00 2759 145 0.1660 0.2302 REMARK 3 6 3.8310 - 3.6052 1.00 2718 144 0.1821 0.2027 REMARK 3 7 3.6052 - 3.4247 1.00 2743 144 0.2061 0.2167 REMARK 3 8 3.4247 - 3.2757 1.00 2714 143 0.2037 0.2809 REMARK 3 9 3.2757 - 3.1496 1.00 2694 142 0.2137 0.2336 REMARK 3 10 3.1496 - 3.0409 1.00 2749 144 0.2298 0.2463 REMARK 3 11 3.0409 - 2.9459 0.99 2687 142 0.2487 0.3147 REMARK 3 12 2.9459 - 2.8617 1.00 2708 142 0.2471 0.3124 REMARK 3 13 2.8617 - 2.7863 0.99 2709 143 0.2516 0.3154 REMARK 3 14 2.7863 - 2.7184 1.00 2675 141 0.2583 0.2955 REMARK 3 15 2.7184 - 2.6566 0.99 2724 143 0.2690 0.2987 REMARK 3 16 2.6566 - 2.6000 1.00 2700 142 0.2994 0.3453 REMARK 3 17 2.6000 - 2.5480 0.99 2663 140 0.3404 0.3525 REMARK 3 18 2.5480 - 2.5000 1.00 2698 142 0.3255 0.4107 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5159 30.3307 14.7046 REMARK 3 T TENSOR REMARK 3 T11: 0.6972 T22: 0.4924 REMARK 3 T33: 0.8431 T12: 0.1499 REMARK 3 T13: -0.2938 T23: -0.0778 REMARK 3 L TENSOR REMARK 3 L11: 8.3475 L22: 7.7183 REMARK 3 L33: 6.9028 L12: 0.7909 REMARK 3 L13: -1.3382 L23: 2.7982 REMARK 3 S TENSOR REMARK 3 S11: 0.6992 S12: 0.5084 S13: -1.6157 REMARK 3 S21: -0.4324 S22: -0.6885 S23: 0.2230 REMARK 3 S31: 0.8617 S32: -0.0947 S33: -0.0279 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 462 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4298 -1.6569 38.6974 REMARK 3 T TENSOR REMARK 3 T11: 0.3374 T22: 0.3284 REMARK 3 T33: 0.3318 T12: -0.0336 REMARK 3 T13: -0.0541 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.5538 L22: 0.9628 REMARK 3 L33: 2.9880 L12: -0.0895 REMARK 3 L13: 0.0600 L23: 1.3328 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: 0.0067 S13: 0.0848 REMARK 3 S21: 0.0111 S22: -0.1734 S23: 0.0680 REMARK 3 S31: -0.0720 S32: -0.2335 S33: 0.1663 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8120 -14.4899 -14.1916 REMARK 3 T TENSOR REMARK 3 T11: 0.6256 T22: 0.8805 REMARK 3 T33: 0.6694 T12: -0.0399 REMARK 3 T13: -0.1188 T23: 0.2466 REMARK 3 L TENSOR REMARK 3 L11: 5.9989 L22: 2.3532 REMARK 3 L33: 3.8899 L12: 3.7670 REMARK 3 L13: 4.8367 L23: 3.0513 REMARK 3 S TENSOR REMARK 3 S11: 0.1297 S12: 0.8409 S13: -0.1915 REMARK 3 S21: -0.2758 S22: 0.0216 S23: 0.0292 REMARK 3 S31: 0.0283 S32: 0.3156 S33: -0.1665 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 158 THROUGH 462 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.2739 4.0015 -10.4242 REMARK 3 T TENSOR REMARK 3 T11: 0.3720 T22: 0.4220 REMARK 3 T33: 0.3561 T12: 0.0129 REMARK 3 T13: 0.0487 T23: 0.1058 REMARK 3 L TENSOR REMARK 3 L11: 3.2736 L22: 1.4596 REMARK 3 L33: 0.6055 L12: -1.0681 REMARK 3 L13: 0.0564 L23: 0.2217 REMARK 3 S TENSOR REMARK 3 S11: 0.1924 S12: 0.5503 S13: 0.2992 REMARK 3 S21: -0.2944 S22: -0.1324 S23: -0.1769 REMARK 3 S31: -0.0399 S32: 0.0117 S33: -0.0639 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 182 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3436 18.1437 12.0820 REMARK 3 T TENSOR REMARK 3 T11: 1.5832 T22: 0.7785 REMARK 3 T33: 1.5141 T12: 0.2796 REMARK 3 T13: -0.4307 T23: -0.1744 REMARK 3 L TENSOR REMARK 3 L11: 4.9888 L22: 1.9380 REMARK 3 L33: 3.9127 L12: 2.5670 REMARK 3 L13: 0.7641 L23: 1.9234 REMARK 3 S TENSOR REMARK 3 S11: -0.2413 S12: 0.2998 S13: -0.6116 REMARK 3 S21: -0.2340 S22: -0.6659 S23: 2.0696 REMARK 3 S31: -0.2677 S32: -0.1341 S33: 0.9043 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 184 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1144 -22.0985 -20.3877 REMARK 3 T TENSOR REMARK 3 T11: 1.0312 T22: 2.0137 REMARK 3 T33: 1.1883 T12: 0.0966 REMARK 3 T13: -0.1979 T23: 0.1706 REMARK 3 L TENSOR REMARK 3 L11: 7.1013 L22: 0.0342 REMARK 3 L33: 2.0000 L12: -0.4935 REMARK 3 L13: 9.0491 L23: -0.6287 REMARK 3 S TENSOR REMARK 3 S11: 0.6045 S12: -0.2630 S13: -0.5713 REMARK 3 S21: 0.3488 S22: 0.1589 S23: -0.0063 REMARK 3 S31: 0.4558 S32: -0.2570 S33: -0.7618 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PC8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51681 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.334 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.830 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N7D, 2PDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M LITHIUM SULFATE, 0.05 M REMARK 280 MAGNESIUM CHLORIDE HEXAHYDRATE ,0.1 M HEPES 7.8, 20 % V/V PEG REMARK 280 SMEAR HIGH, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 113.29000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.91000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 113.29000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.91000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 49 REMARK 465 GLY B 49 REMARK 465 SER B 50 REMARK 465 HIS B 51 REMARK 465 MET B 52 REMARK 465 GLY B 53 REMARK 465 ARG C 180 REMARK 465 VAL C 181 REMARK 465 ARG D 180 REMARK 465 VAL D 181 REMARK 465 ARG D 182 REMARK 465 LYS D 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 95 42.54 -103.75 REMARK 500 VAL A 174 120.38 67.33 REMARK 500 LYS A 275 18.37 58.37 REMARK 500 VAL A 421 -75.43 -113.60 REMARK 500 LEU B 98 -50.80 -123.25 REMARK 500 LEU B 139 -157.18 -92.19 REMARK 500 VAL B 174 124.22 64.26 REMARK 500 LYS B 275 -3.39 64.58 REMARK 500 VAL B 421 -73.75 -110.43 REMARK 500 ASP B 422 35.52 -144.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 173 O REMARK 620 2 GLU A 176 OE1 92.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 211 O REMARK 620 2 LEU A 214 O 59.3 REMARK 620 3 GLU A 219 OE1 61.0 59.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 243 O REMARK 620 2 GLY A 245 O 89.2 REMARK 620 3 ASP A 285 OD2 137.0 92.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 325 O REMARK 620 2 ARG A 328 O 75.7 REMARK 620 3 GLY A 330 O 88.0 91.3 REMARK 620 4 GLU A 370 OE1 73.6 146.5 74.7 REMARK 620 5 GLU A 370 OE2 82.0 137.3 124.1 49.8 REMARK 620 6 HOH A 713 O 166.6 114.5 100.0 98.0 84.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 357 OG REMARK 620 2 MET A 401 O 82.7 REMARK 620 3 GLY A 403 O 81.5 4.1 REMARK 620 4 GLY A 405 O 78.9 3.9 4.0 REMARK 620 5 ASP A 445 OD1 83.9 2.5 6.5 5.9 REMARK 620 6 ASP A 445 OD2 81.0 3.1 6.6 4.1 3.0 REMARK 620 7 HOH A 661 O 82.5 0.9 3.3 3.7 3.3 3.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 243 O REMARK 620 2 GLY B 245 O 89.5 REMARK 620 3 ASP B 285 OD2 147.6 84.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 325 O REMARK 620 2 ARG B 328 O 65.5 REMARK 620 3 GLY B 330 O 70.4 79.1 REMARK 620 4 GLU B 370 OE1 65.5 125.9 64.1 REMARK 620 5 GLU B 370 OE2 76.8 133.5 113.5 49.8 REMARK 620 6 HOH B 677 O 152.6 139.7 100.3 87.1 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 357 OG REMARK 620 2 MET B 401 O 85.0 REMARK 620 3 GLY B 403 O 84.3 4.1 REMARK 620 4 GLY B 405 O 81.4 3.8 4.0 REMARK 620 5 ASP B 445 OD1 86.6 3.2 7.2 6.6 REMARK 620 6 ASP B 445 OD2 83.6 2.5 6.1 4.1 3.1 REMARK 620 7 HOH B 646 O 84.9 0.7 3.4 3.6 3.8 3.0 REMARK 620 N 1 2 3 4 5 6 DBREF 7PC8 A 54 143 UNP Q9NSN8 SNTG1_HUMAN 54 143 DBREF 7PC8 A 145 462 UNP P07355 ANXA2_HUMAN 22 339 DBREF 7PC8 B 54 143 UNP Q9NSN8 SNTG1_HUMAN 54 143 DBREF 7PC8 B 145 462 UNP P07355 ANXA2_HUMAN 22 339 DBREF 7PC8 C 180 189 UNP Q15418 KS6A1_HUMAN 726 735 DBREF 7PC8 D 180 189 UNP Q15418 KS6A1_HUMAN 726 735 SEQADV 7PC8 GLY A 49 UNP Q9NSN8 EXPRESSION TAG SEQADV 7PC8 SER A 50 UNP Q9NSN8 EXPRESSION TAG SEQADV 7PC8 HIS A 51 UNP Q9NSN8 EXPRESSION TAG SEQADV 7PC8 MET A 52 UNP Q9NSN8 EXPRESSION TAG SEQADV 7PC8 GLY A 53 UNP Q9NSN8 EXPRESSION TAG SEQADV 7PC8 GLY A 144 UNP Q9NSN8 LINKER SEQADV 7PC8 GLU A 189 UNP P07355 ALA 66 CONFLICT SEQADV 7PC8 GLY B 49 UNP Q9NSN8 EXPRESSION TAG SEQADV 7PC8 SER B 50 UNP Q9NSN8 EXPRESSION TAG SEQADV 7PC8 HIS B 51 UNP Q9NSN8 EXPRESSION TAG SEQADV 7PC8 MET B 52 UNP Q9NSN8 EXPRESSION TAG SEQADV 7PC8 GLY B 53 UNP Q9NSN8 EXPRESSION TAG SEQADV 7PC8 GLY B 144 UNP Q9NSN8 LINKER SEQADV 7PC8 GLU B 189 UNP P07355 ALA 66 CONFLICT SEQADV 7PC8 GLU C 186 UNP Q15418 SER 732 CONFLICT SEQADV 7PC8 GLU D 186 UNP Q15418 SER 732 CONFLICT SEQRES 1 A 414 GLY SER HIS MET GLY GLY GLU ARG THR VAL THR ILE ARG SEQRES 2 A 414 ARG GLN THR VAL GLY GLY PHE GLY LEU SER ILE LYS GLY SEQRES 3 A 414 GLY ALA GLU HIS ASN ILE PRO VAL VAL VAL SER LYS ILE SEQRES 4 A 414 SER LYS GLU GLN ARG ALA GLU LEU SER GLY LEU LEU PHE SEQRES 5 A 414 ILE GLY ASP ALA ILE LEU GLN ILE ASN GLY ILE ASN VAL SEQRES 6 A 414 ARG LYS CYS ARG HIS GLU GLU VAL VAL GLN VAL LEU ARG SEQRES 7 A 414 ASN ALA GLY GLU GLU VAL THR LEU THR VAL SER PHE LEU SEQRES 8 A 414 LYS ARG ALA PRO GLY SER ALA TYR GLY SER VAL LYS ALA SEQRES 9 A 414 TYR THR ASN PHE ASP ALA GLU ARG ASP ALA LEU ASN ILE SEQRES 10 A 414 GLU THR ALA ILE LYS THR LYS GLY VAL ASP GLU VAL THR SEQRES 11 A 414 ILE VAL ASN ILE LEU THR ASN ARG SER ASN GLU GLN ARG SEQRES 12 A 414 GLN ASP ILE ALA PHE ALA TYR GLN ARG ARG THR LYS LYS SEQRES 13 A 414 GLU LEU ALA SER ALA LEU LYS SER ALA LEU SER GLY HIS SEQRES 14 A 414 LEU GLU THR VAL ILE LEU GLY LEU LEU LYS THR PRO ALA SEQRES 15 A 414 GLN TYR ASP ALA SER GLU LEU LYS ALA SER MET LYS GLY SEQRES 16 A 414 LEU GLY THR ASP GLU ASP SER LEU ILE GLU ILE ILE CYS SEQRES 17 A 414 SER ARG THR ASN GLN GLU LEU GLN GLU ILE ASN ARG VAL SEQRES 18 A 414 TYR LYS GLU MET TYR LYS THR ASP LEU GLU LYS ASP ILE SEQRES 19 A 414 ILE SER ASP THR SER GLY ASP PHE ARG LYS LEU MET VAL SEQRES 20 A 414 ALA LEU ALA LYS GLY ARG ARG ALA GLU ASP GLY SER VAL SEQRES 21 A 414 ILE ASP TYR GLU LEU ILE ASP GLN ASP ALA ARG ASP LEU SEQRES 22 A 414 TYR ASP ALA GLY VAL LYS ARG LYS GLY THR ASP VAL PRO SEQRES 23 A 414 LYS TRP ILE SER ILE MET THR GLU ARG SER VAL PRO HIS SEQRES 24 A 414 LEU GLN LYS VAL PHE ASP ARG TYR LYS SER TYR SER PRO SEQRES 25 A 414 TYR ASP MET LEU GLU SER ILE ARG LYS GLU VAL LYS GLY SEQRES 26 A 414 ASP LEU GLU ASN ALA PHE LEU ASN LEU VAL GLN CYS ILE SEQRES 27 A 414 GLN ASN LYS PRO LEU TYR PHE ALA ASP ARG LEU TYR ASP SEQRES 28 A 414 SER MET LYS GLY LYS GLY THR ARG ASP LYS VAL LEU ILE SEQRES 29 A 414 ARG ILE MET VAL SER ARG SER GLU VAL ASP MET LEU LYS SEQRES 30 A 414 ILE ARG SER GLU PHE LYS ARG LYS TYR GLY LYS SER LEU SEQRES 31 A 414 TYR TYR TYR ILE GLN GLN ASP THR LYS GLY ASP TYR GLN SEQRES 32 A 414 LYS ALA LEU LEU TYR LEU CYS GLY GLY ASP ASP SEQRES 1 B 414 GLY SER HIS MET GLY GLY GLU ARG THR VAL THR ILE ARG SEQRES 2 B 414 ARG GLN THR VAL GLY GLY PHE GLY LEU SER ILE LYS GLY SEQRES 3 B 414 GLY ALA GLU HIS ASN ILE PRO VAL VAL VAL SER LYS ILE SEQRES 4 B 414 SER LYS GLU GLN ARG ALA GLU LEU SER GLY LEU LEU PHE SEQRES 5 B 414 ILE GLY ASP ALA ILE LEU GLN ILE ASN GLY ILE ASN VAL SEQRES 6 B 414 ARG LYS CYS ARG HIS GLU GLU VAL VAL GLN VAL LEU ARG SEQRES 7 B 414 ASN ALA GLY GLU GLU VAL THR LEU THR VAL SER PHE LEU SEQRES 8 B 414 LYS ARG ALA PRO GLY SER ALA TYR GLY SER VAL LYS ALA SEQRES 9 B 414 TYR THR ASN PHE ASP ALA GLU ARG ASP ALA LEU ASN ILE SEQRES 10 B 414 GLU THR ALA ILE LYS THR LYS GLY VAL ASP GLU VAL THR SEQRES 11 B 414 ILE VAL ASN ILE LEU THR ASN ARG SER ASN GLU GLN ARG SEQRES 12 B 414 GLN ASP ILE ALA PHE ALA TYR GLN ARG ARG THR LYS LYS SEQRES 13 B 414 GLU LEU ALA SER ALA LEU LYS SER ALA LEU SER GLY HIS SEQRES 14 B 414 LEU GLU THR VAL ILE LEU GLY LEU LEU LYS THR PRO ALA SEQRES 15 B 414 GLN TYR ASP ALA SER GLU LEU LYS ALA SER MET LYS GLY SEQRES 16 B 414 LEU GLY THR ASP GLU ASP SER LEU ILE GLU ILE ILE CYS SEQRES 17 B 414 SER ARG THR ASN GLN GLU LEU GLN GLU ILE ASN ARG VAL SEQRES 18 B 414 TYR LYS GLU MET TYR LYS THR ASP LEU GLU LYS ASP ILE SEQRES 19 B 414 ILE SER ASP THR SER GLY ASP PHE ARG LYS LEU MET VAL SEQRES 20 B 414 ALA LEU ALA LYS GLY ARG ARG ALA GLU ASP GLY SER VAL SEQRES 21 B 414 ILE ASP TYR GLU LEU ILE ASP GLN ASP ALA ARG ASP LEU SEQRES 22 B 414 TYR ASP ALA GLY VAL LYS ARG LYS GLY THR ASP VAL PRO SEQRES 23 B 414 LYS TRP ILE SER ILE MET THR GLU ARG SER VAL PRO HIS SEQRES 24 B 414 LEU GLN LYS VAL PHE ASP ARG TYR LYS SER TYR SER PRO SEQRES 25 B 414 TYR ASP MET LEU GLU SER ILE ARG LYS GLU VAL LYS GLY SEQRES 26 B 414 ASP LEU GLU ASN ALA PHE LEU ASN LEU VAL GLN CYS ILE SEQRES 27 B 414 GLN ASN LYS PRO LEU TYR PHE ALA ASP ARG LEU TYR ASP SEQRES 28 B 414 SER MET LYS GLY LYS GLY THR ARG ASP LYS VAL LEU ILE SEQRES 29 B 414 ARG ILE MET VAL SER ARG SER GLU VAL ASP MET LEU LYS SEQRES 30 B 414 ILE ARG SER GLU PHE LYS ARG LYS TYR GLY LYS SER LEU SEQRES 31 B 414 TYR TYR TYR ILE GLN GLN ASP THR LYS GLY ASP TYR GLN SEQRES 32 B 414 LYS ALA LEU LEU TYR LEU CYS GLY GLY ASP ASP SEQRES 1 C 10 ARG VAL ARG LYS LEU PRO GLU THR THR LEU SEQRES 1 D 10 ARG VAL ARG LYS LEU PRO GLU THR THR LEU HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET CA B 501 1 HET CA B 502 1 HET CA B 503 1 HET CA B 504 1 HET GOL B 505 6 HET GOL B 506 6 HET GOL B 507 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CA 9(CA 2+) FORMUL 10 GOL 6(C3 H8 O3) FORMUL 20 HOH *221(H2 O) HELIX 1 AA1 ALA A 76 ASN A 79 5 4 HELIX 2 AA2 SER A 88 LEU A 95 1 8 HELIX 3 AA3 ARG A 117 ASN A 127 1 11 HELIX 4 AA4 ASP A 157 THR A 171 1 15 HELIX 5 AA5 ASP A 175 THR A 184 1 10 HELIX 6 AA6 SER A 187 LYS A 203 1 17 HELIX 7 AA7 GLU A 205 LEU A 214 1 10 HELIX 8 AA8 SER A 215 LYS A 227 1 13 HELIX 9 AA9 THR A 228 MET A 241 1 14 HELIX 10 AB1 ASP A 247 ARG A 258 1 12 HELIX 11 AB2 THR A 259 LYS A 275 1 17 HELIX 12 AB3 ASP A 277 THR A 286 1 10 HELIX 13 AB4 SER A 287 LYS A 299 1 13 HELIX 14 AB5 ASP A 310 GLY A 325 1 16 HELIX 15 AB6 ASP A 332 ARG A 343 1 12 HELIX 16 AB7 SER A 344 SER A 359 1 16 HELIX 17 AB8 ASP A 362 VAL A 371 1 10 HELIX 18 AB9 LYS A 372 ASN A 388 1 17 HELIX 19 AC1 ASN A 388 GLY A 403 1 16 HELIX 20 AC2 ARG A 407 ARG A 418 1 12 HELIX 21 AC3 ASP A 422 GLY A 435 1 14 HELIX 22 AC4 SER A 437 THR A 446 1 10 HELIX 23 AC5 LYS A 447 GLY A 459 1 13 HELIX 24 AC6 ALA B 76 ASN B 79 5 4 HELIX 25 AC7 SER B 88 SER B 96 1 9 HELIX 26 AC8 ARG B 117 ASN B 127 1 11 HELIX 27 AC9 ASP B 157 THR B 171 1 15 HELIX 28 AD1 ASP B 175 THR B 184 1 10 HELIX 29 AD2 SER B 187 LYS B 203 1 17 HELIX 30 AD3 GLU B 205 LEU B 214 1 10 HELIX 31 AD4 SER B 215 LYS B 227 1 13 HELIX 32 AD5 THR B 228 MET B 241 1 14 HELIX 33 AD6 ASP B 247 ARG B 258 1 12 HELIX 34 AD7 THR B 259 LYS B 275 1 17 HELIX 35 AD8 ASP B 277 THR B 286 1 10 HELIX 36 AD9 SER B 287 LYS B 299 1 13 HELIX 37 AE1 ASP B 310 ALA B 324 1 15 HELIX 38 AE2 ASP B 332 ARG B 343 1 12 HELIX 39 AE3 SER B 344 SER B 359 1 16 HELIX 40 AE4 ASP B 362 VAL B 371 1 10 HELIX 41 AE5 LYS B 372 LYS B 402 1 31 HELIX 42 AE6 ARG B 407 ARG B 418 1 12 HELIX 43 AE7 ASP B 422 GLY B 435 1 14 HELIX 44 AE8 SER B 437 THR B 446 1 10 HELIX 45 AE9 LYS B 447 GLY B 459 1 13 SHEET 1 AA1 3 HIS A 51 MET A 52 0 SHEET 2 AA1 3 GLU A 131 LYS A 140 -1 O LYS A 140 N HIS A 51 SHEET 3 AA1 3 ARG A 56 ARG A 61 -1 N VAL A 58 O LEU A 134 SHEET 1 AA2 4 HIS A 51 MET A 52 0 SHEET 2 AA2 4 GLU A 131 LYS A 140 -1 O LYS A 140 N HIS A 51 SHEET 3 AA2 4 ASP A 103 ILE A 108 -1 N LEU A 106 O THR A 135 SHEET 4 AA2 4 ILE A 111 ASN A 112 -1 O ILE A 111 N ILE A 108 SHEET 1 AA3 3 ILE A 80 ILE A 87 0 SHEET 2 AA3 3 LEU A 70 GLY A 75 -1 N SER A 71 O SER A 85 SHEET 3 AA3 3 GLU C 186 LEU C 189 -1 O LEU C 189 N LEU A 70 SHEET 1 AA4 4 GLU B 55 ARG B 61 0 SHEET 2 AA4 4 GLU B 131 PHE B 138 -1 O VAL B 136 N ARG B 56 SHEET 3 AA4 4 ASP B 103 ILE B 108 -1 N LEU B 106 O THR B 135 SHEET 4 AA4 4 ILE B 111 ASN B 112 -1 O ILE B 111 N ILE B 108 SHEET 1 AA5 3 ILE B 80 ILE B 87 0 SHEET 2 AA5 3 LEU B 70 GLY B 75 -1 N LYS B 73 O VAL B 83 SHEET 3 AA5 3 GLU D 186 LEU D 189 -1 O THR D 187 N ILE B 72 LINK O GLY A 173 CA CA A 501 1555 1555 2.87 LINK OE1 GLU A 176 CA CA A 501 1555 1555 3.02 LINK O LYS A 211 CA CA A 502 1555 1555 3.16 LINK O LEU A 214 CA CA A 502 1555 1555 2.90 LINK OE1 GLU A 219 CA CA A 502 1555 1555 2.89 LINK O GLY A 243 CA CA A 503 1555 1555 2.37 LINK O GLY A 245 CA CA A 503 1555 1555 2.69 LINK OD2 ASP A 285 CA CA A 503 1555 1555 2.19 LINK O GLY A 325 CA CA A 504 1555 1555 2.46 LINK O ARG A 328 CA CA A 504 1555 1555 2.29 LINK O GLY A 330 CA CA A 504 1555 1555 2.56 LINK OG SER A 357 CA CA A 505 1555 4556 2.50 LINK OE1 GLU A 370 CA CA A 504 1555 1555 2.50 LINK OE2 GLU A 370 CA CA A 504 1555 1555 2.71 LINK O MET A 401 CA CA A 505 1555 1555 2.33 LINK O GLY A 403 CA CA A 505 1555 1555 2.39 LINK O GLY A 405 CA CA A 505 1555 1555 2.33 LINK OD1 ASP A 445 CA CA A 505 1555 1555 2.56 LINK OD2 ASP A 445 CA CA A 505 1555 1555 2.52 LINK CA CA A 504 O HOH A 713 1555 1555 2.79 LINK CA CA A 505 O HOH A 661 1555 4546 2.37 LINK O LYS B 211 CA CA B 501 1555 1555 3.04 LINK O GLY B 243 CA CA B 502 1555 1555 2.34 LINK O GLY B 245 CA CA B 502 1555 1555 2.80 LINK OD2 ASP B 285 CA CA B 502 1555 1555 2.46 LINK O GLY B 325 CA CA B 503 1555 1555 2.69 LINK O ARG B 328 CA CA B 503 1555 1555 2.52 LINK O GLY B 330 CA CA B 503 1555 1555 2.89 LINK OG SER B 357 CA CA B 504 1555 4545 2.48 LINK OE1 GLU B 370 CA CA B 503 1555 1555 2.51 LINK OE2 GLU B 370 CA CA B 503 1555 1555 2.69 LINK O MET B 401 CA CA B 504 1555 1555 2.49 LINK O GLY B 403 CA CA B 504 1555 1555 2.36 LINK O GLY B 405 CA CA B 504 1555 1555 2.40 LINK OD1 ASP B 445 CA CA B 504 1555 1555 3.02 LINK OD2 ASP B 445 CA CA B 504 1555 1555 2.24 LINK CA CA B 503 O HOH B 677 1555 1555 2.59 LINK CA CA B 504 O HOH B 646 1555 4555 2.31 CRYST1 226.580 59.820 125.210 90.00 117.84 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004413 0.000000 0.002331 0.00000 SCALE2 0.000000 0.016717 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009032 0.00000