HEADER CYTOSOLIC PROTEIN 03-AUG-21 7PCJ TITLE X-RAY STRUCTURE OF CYPA-C52AK125C/CSA/AROMATIC FOLDAMER COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: PPIASE A,CYCLOPHILIN A,CYCLOSPORIN A-BINDING PROTEIN, COMPND 5 ROTAMASE A; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CYCLOSPORIN A; COMPND 11 CHAIN: B, E; COMPND 12 OTHER_DETAILS: CYCLIC UNDECAPEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIA, CYPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSY; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: TOLYPOCLADIUM INFLATUM; SOURCE 11 ORGANISM_TAXID: 29910 KEYWDS AROMATIC FOLDAMER DISULFIDE TETHER CYSTEINE MUTANT, CYTOSOLIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.VALLADE,B.LANGLOIS D'ESTAINTOT,L.FISCHER,J.BURATTO,M.SAVKO,I.HUC REVDAT 2 31-JAN-24 7PCJ 1 LINK REVDAT 1 13-JUL-22 7PCJ 0 JRNL AUTH L.FISCHER,M.SAVKO,B.LANGLOIS D'ESTAINTOT,J.BURATTO, JRNL AUTH 2 M.VALLADE,I.HUC JRNL TITL X-RAY STRUCTURE OF A CYSTEIN MUTANT OF CYCLOPHILIN A JRNL TITL 2 TETHERED TO AN AROMATIC OLIGOAMIDE FOLDAMER COMPLEXED WITH JRNL TITL 3 CYCLOSPORIN A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 24452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1272 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 277 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 13.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2667 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 216 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.64000 REMARK 3 B22 (A**2) : -1.19000 REMARK 3 B33 (A**2) : 2.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.94000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.840 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2959 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2707 ; 0.003 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3989 ; 1.568 ; 1.753 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6249 ; 1.255 ; 1.673 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 8.166 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;31.879 ;22.868 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 428 ;14.375 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.040 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3364 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 639 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9187 75.6391 67.1367 REMARK 3 T TENSOR REMARK 3 T11: 0.1323 T22: 0.0806 REMARK 3 T33: 0.0088 T12: -0.0131 REMARK 3 T13: -0.0243 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 1.7012 L22: 3.0980 REMARK 3 L33: 2.9446 L12: 0.0439 REMARK 3 L13: 0.6759 L23: 1.6286 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: -0.0325 S13: -0.0030 REMARK 3 S21: -0.0362 S22: 0.1246 S23: -0.0464 REMARK 3 S31: -0.0660 S32: -0.0541 S33: -0.0693 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7829 69.8529 53.6456 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.1134 REMARK 3 T33: 0.0557 T12: -0.0213 REMARK 3 T13: -0.0153 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 3.1165 L22: 8.2729 REMARK 3 L33: 2.9691 L12: 1.0025 REMARK 3 L13: 2.9419 L23: 0.5700 REMARK 3 S TENSOR REMARK 3 S11: -0.1270 S12: 0.2473 S13: -0.1082 REMARK 3 S21: -0.4314 S22: 0.1469 S23: -0.1222 REMARK 3 S31: -0.1293 S32: 0.1485 S33: -0.0199 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 167 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7531 60.1701 31.7936 REMARK 3 T TENSOR REMARK 3 T11: 0.1714 T22: 0.1732 REMARK 3 T33: 0.0140 T12: -0.0125 REMARK 3 T13: -0.0337 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 1.4284 L22: 1.7582 REMARK 3 L33: 2.5079 L12: 0.1863 REMARK 3 L13: 0.0852 L23: -0.2704 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.2223 S13: -0.0055 REMARK 3 S21: -0.1700 S22: 0.0124 S23: 0.0179 REMARK 3 S31: -0.0340 S32: 0.0226 S33: -0.0162 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 11 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5882 66.4766 45.1944 REMARK 3 T TENSOR REMARK 3 T11: 0.2084 T22: 0.1437 REMARK 3 T33: 0.0226 T12: 0.0010 REMARK 3 T13: 0.0045 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 7.4011 L22: 4.4913 REMARK 3 L33: 5.9102 L12: 0.6877 REMARK 3 L13: 2.2123 L23: -3.9524 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: 0.1654 S13: 0.2807 REMARK 3 S21: 0.5395 S22: 0.1605 S23: 0.1155 REMARK 3 S31: -0.3992 S32: 0.1521 S33: -0.1061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7PCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292112340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28858 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 62.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : 0.19100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.50 REMARK 200 R MERGE FOR SHELL (I) : 1.20600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 2ESL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS 0.1M, PEG 3350 15%, NAN3 3MM, PH REMARK 280 8.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.44550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CYCLOSPORIN IS A CYCLIC UNDECAPEPTIDE. REMARK 400 HERE, CYCLOSPORIN A IS REPRESENTED BY THE SEQUENCE (SEQRES) REMARK 400 REMARK 400 THE CYCLOSPORIN A IS CYCLIC PEPTIDE, A MEMBER OF IMMUNOSUPPRESSANT REMARK 400 CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: CYCLOSPORIN A REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: CYCLOSPORIN IS A CYCLIC UNDECAPEPTIDE. CYCLIZATION REMARK 400 IS ACHIEVED BY LINKING THE N- AND THE C- TERMINI. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 MET D 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 54 SG REMARK 470 ARG A 146 NE CZ NH1 NH2 REMARK 470 LYS D 46 CE NZ REMARK 470 CYS D 54 SG REMARK 470 GLU D 167 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 342 O HOH A 360 2.15 REMARK 500 O HOH A 306 O HOH A 349 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 343 O HOH D 301 2657 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -79.10 -123.52 REMARK 500 THR A 121 57.81 -111.40 REMARK 500 PHE A 131 -0.67 -146.15 REMARK 500 MLE B 2 72.62 -119.40 REMARK 500 ASP D 15 41.83 39.05 REMARK 500 PHE D 62 -80.58 -127.95 REMARK 500 REMARK 500 REMARK: NULL DBREF 7PCJ A 3 167 UNP P62937 PPIA_HUMAN 1 165 DBREF 7PCJ B 1 11 PDB 7PCJ 7PCJ 1 11 DBREF 7PCJ D 3 167 UNP P62937 PPIA_HUMAN 1 165 DBREF 7PCJ E 1 11 PDB 7PCJ 7PCJ 1 11 SEQADV 7PCJ CYS A 127 UNP P62937 LYS 125 ENGINEERED MUTATION SEQADV 7PCJ CYS D 127 UNP P62937 LYS 125 ENGINEERED MUTATION SEQRES 1 A 165 MET VAL ASN PRO THR VAL PHE PHE ASP ILE ALA VAL ASP SEQRES 2 A 165 GLY GLU PRO LEU GLY ARG VAL SER PHE GLU LEU PHE ALA SEQRES 3 A 165 ASP LYS VAL PRO LYS THR ALA GLU ASN PHE ARG ALA LEU SEQRES 4 A 165 SER THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER CYS SEQRES 5 A 165 PHE HIS ARG ILE ILE PRO GLY PHE MET CYS GLN GLY GLY SEQRES 6 A 165 ASP PHE THR ARG HIS ASN GLY THR GLY GLY LYS SER ILE SEQRES 7 A 165 TYR GLY GLU LYS PHE GLU ASP GLU ASN PHE ILE LEU LYS SEQRES 8 A 165 HIS THR GLY PRO GLY ILE LEU SER MET ALA ASN ALA GLY SEQRES 9 A 165 PRO ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR ALA SEQRES 10 A 165 LYS THR GLU TRP LEU ASP GLY CYS HIS VAL VAL PHE GLY SEQRES 11 A 165 LYS VAL LYS GLU GLY MET ASN ILE VAL GLU ALA MET GLU SEQRES 12 A 165 ARG PHE GLY SER ARG ASN GLY LYS THR SER LYS LYS ILE SEQRES 13 A 165 THR ILE ALA ASP CYS GLY GLN LEU GLU SEQRES 1 B 11 DAL MLE MLE MVA BMT ABA SAR MLE VAL MLE ALA SEQRES 1 D 165 MET VAL ASN PRO THR VAL PHE PHE ASP ILE ALA VAL ASP SEQRES 2 D 165 GLY GLU PRO LEU GLY ARG VAL SER PHE GLU LEU PHE ALA SEQRES 3 D 165 ASP LYS VAL PRO LYS THR ALA GLU ASN PHE ARG ALA LEU SEQRES 4 D 165 SER THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER CYS SEQRES 5 D 165 PHE HIS ARG ILE ILE PRO GLY PHE MET CYS GLN GLY GLY SEQRES 6 D 165 ASP PHE THR ARG HIS ASN GLY THR GLY GLY LYS SER ILE SEQRES 7 D 165 TYR GLY GLU LYS PHE GLU ASP GLU ASN PHE ILE LEU LYS SEQRES 8 D 165 HIS THR GLY PRO GLY ILE LEU SER MET ALA ASN ALA GLY SEQRES 9 D 165 PRO ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR ALA SEQRES 10 D 165 LYS THR GLU TRP LEU ASP GLY CYS HIS VAL VAL PHE GLY SEQRES 11 D 165 LYS VAL LYS GLU GLY MET ASN ILE VAL GLU ALA MET GLU SEQRES 12 D 165 ARG PHE GLY SER ARG ASN GLY LYS THR SER LYS LYS ILE SEQRES 13 D 165 THR ILE ALA ASP CYS GLY GLN LEU GLU SEQRES 1 E 11 DAL MLE MLE MVA BMT ABA SAR MLE VAL MLE ALA HET DAL B 1 5 HET MLE B 2 9 HET MLE B 3 9 HET MVA B 4 8 HET BMT B 5 13 HET ABA B 6 6 HET SAR B 7 5 HET MLE B 8 9 HET MLE B 10 9 HET DAL E 1 5 HET MLE E 2 9 HET MLE E 3 9 HET MVA E 4 8 HET BMT E 5 13 HET ABA E 6 6 HET SAR E 7 5 HET MLE E 8 9 HET MLE E 10 9 HET 7I7 A 201 20 HET QUK A 202 18 HET QVS A 203 14 HET QUJ A 204 18 HET QUK A 205 18 HET 7IB A 206 20 HET QUK D 201 18 HET QVS D 202 14 HET QUJ D 203 18 HET QUK D 204 18 HET 7IB D 205 20 HET 7I7 D 206 20 HETNAM DAL D-ALANINE HETNAM MLE N-METHYLLEUCINE HETNAM MVA N-METHYLVALINE HETNAM BMT 4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM SAR SARCOSINE HETNAM 7I7 N-[2-[2-[2-(2-FORMAMIDOETHOXY)ETHOXY]ETHOXY]ETHYL]-3- HETNAM 2 7I7 SULFANYL-PROPANAMIDE HETNAM QUK 8-AZANYL-4-(3-AZANYLPROPOXY)QUINOLINE-2-CARBOXYLIC ACID HETNAM QVS 8-AZANYL-4-OXIDANYL-QUINOLINE-2-CARBOXYLIC ACID HETNAM QUJ 8-AZANYL-4-(2-METHYLPROPOXY)QUINOLINE-2-CARBOXYLIC ACID HETNAM 7IB 8-AZANYL-5-(4-OXIDANYL-4-OXIDANYLIDENE-BUTYL)QUINOLINE- HETNAM 2 7IB 2-CARBOXYLIC ACID FORMUL 2 DAL 2(C3 H7 N O2) FORMUL 2 MLE 8(C7 H15 N O2) FORMUL 2 MVA 2(C6 H13 N O2) FORMUL 2 BMT 2(C10 H19 N O3) FORMUL 2 ABA 2(C4 H9 N O2) FORMUL 2 SAR 2(C3 H7 N O2) FORMUL 5 7I7 2(C12 H24 N2 O5 S) FORMUL 6 QUK 4(C13 H15 N3 O3) FORMUL 7 QVS 2(C10 H8 N2 O3) FORMUL 8 QUJ 2(C14 H16 N2 O3) FORMUL 10 7IB 2(C14 H14 N2 O4) FORMUL 17 HOH *126(H2 O) HELIX 1 AA1 VAL A 31 GLY A 44 1 14 HELIX 2 AA2 THR A 121 ASP A 125 5 5 HELIX 3 AA3 GLY A 137 GLU A 145 1 9 HELIX 4 AA4 ARG A 146 GLY A 148 5 3 HELIX 5 AA5 VAL D 31 GLY D 44 1 14 HELIX 6 AA6 THR D 121 ASP D 125 5 5 HELIX 7 AA7 GLY D 137 ARG D 146 1 10 SHEET 1 AA1 8 PHE A 55 ILE A 59 0 SHEET 2 AA1 8 MET A 63 GLY A 66 -1 O GLN A 65 N ARG A 57 SHEET 3 AA1 8 PHE A 114 CYS A 117 -1 O ILE A 116 N CYS A 64 SHEET 4 AA1 8 ILE A 99 MET A 102 -1 N ILE A 99 O CYS A 117 SHEET 5 AA1 8 VAL A 130 GLU A 136 -1 O GLY A 132 N LEU A 100 SHEET 6 AA1 8 GLU A 17 LEU A 26 -1 N SER A 23 O LYS A 135 SHEET 7 AA1 8 THR A 7 VAL A 14 -1 N ILE A 12 O LEU A 19 SHEET 8 AA1 8 ILE A 158 GLN A 165 -1 O ASP A 162 N ASP A 11 SHEET 1 AA2 8 ARG D 57 ILE D 59 0 SHEET 2 AA2 8 MET D 63 GLY D 66 -1 O GLN D 65 N ARG D 57 SHEET 3 AA2 8 PHE D 114 CYS D 117 -1 O ILE D 116 N CYS D 64 SHEET 4 AA2 8 ILE D 99 MET D 102 -1 N SER D 101 O PHE D 115 SHEET 5 AA2 8 VAL D 130 GLU D 136 -1 O GLY D 132 N LEU D 100 SHEET 6 AA2 8 GLU D 17 LEU D 26 -1 N GLU D 25 O LYS D 133 SHEET 7 AA2 8 THR D 7 VAL D 14 -1 N VAL D 8 O PHE D 24 SHEET 8 AA2 8 ILE D 158 GLU D 167 -1 O ASP D 162 N ASP D 11 LINK SG CYS A 127 SAT 7I7 A 201 1555 1555 2.01 LINK CAB 7I7 A 201 N QUK D 201 1555 1555 1.34 LINK C QUK A 202 N QVS A 203 1555 1555 1.34 LINK N QUK A 202 CAB 7I7 D 206 1555 1555 1.34 LINK C QVS A 203 N QUJ A 204 1555 1555 1.33 LINK C QUJ A 204 N QUK A 205 1555 1555 1.35 LINK C QUK A 205 N 7IB A 206 1555 1555 1.34 LINK C DAL B 1 N MLE B 2 1555 1555 1.39 LINK N DAL B 1 C ALA B 11 1555 1555 1.32 LINK C MLE B 2 N MLE B 3 1555 1555 1.36 LINK C MLE B 3 N MVA B 4 1555 1555 1.32 LINK C MVA B 4 N BMT B 5 1555 1555 1.37 LINK C BMT B 5 N ABA B 6 1555 1555 1.34 LINK C ABA B 6 N SAR B 7 1555 1555 1.35 LINK C SAR B 7 N MLE B 8 1555 1555 1.31 LINK C MLE B 8 N VAL B 9 1555 1555 1.34 LINK C VAL B 9 N MLE B 10 1555 1555 1.32 LINK C MLE B 10 N ALA B 11 1555 1555 1.33 LINK SG CYS D 127 SAT 7I7 D 206 1555 1555 2.00 LINK C QUK D 201 N QVS D 202 1555 1555 1.33 LINK C QVS D 202 N QUJ D 203 1555 1555 1.34 LINK C QUJ D 203 N QUK D 204 1555 1555 1.35 LINK C QUK D 204 N 7IB D 205 1555 1555 1.34 LINK C DAL E 1 N MLE E 2 1555 1555 1.36 LINK N DAL E 1 C ALA E 11 1555 1555 1.34 LINK C MLE E 2 N MLE E 3 1555 1555 1.33 LINK C MLE E 3 N MVA E 4 1555 1555 1.33 LINK C MVA E 4 N BMT E 5 1555 1555 1.33 LINK C BMT E 5 N ABA E 6 1555 1555 1.33 LINK C ABA E 6 N SAR E 7 1555 1555 1.32 LINK C SAR E 7 N MLE E 8 1555 1555 1.33 LINK C MLE E 8 N VAL E 9 1555 1555 1.33 LINK C VAL E 9 N MLE E 10 1555 1555 1.33 LINK C MLE E 10 N ALA E 11 1555 1555 1.34 CRYST1 42.474 70.891 64.090 90.00 102.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023544 0.000000 0.005307 0.00000 SCALE2 0.000000 0.014106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015994 0.00000