HEADER HYDROLASE 21-OCT-98 7PCK TITLE CRYSTAL STRUCTURE OF WILD TYPE HUMAN PROCATHEPSIN K COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PROCATHEPSIN K); COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.4.22.38 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS HYDROLASE (THIOL PROTEASE), PROCATHEPSIN K, CYSTEINE PROTEASES, KEYWDS 2 PROREGION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SIVARAMAN,M.LALUMIERE,R.MENARD,M.CYGLER REVDAT 4 20-SEP-23 7PCK 1 REMARK REVDAT 3 29-JAN-20 7PCK 1 REMARK REVDAT 2 24-FEB-09 7PCK 1 VERSN REVDAT 1 25-OCT-99 7PCK 0 JRNL AUTH J.SIVARAMAN,M.LALUMIERE,R.MENARD,M.CYGLER JRNL TITL CRYSTAL STRUCTURE OF WILD-TYPE HUMAN PROCATHEPSIN K. JRNL REF PROTEIN SCI. V. 8 283 1999 JRNL REFN ISSN 0961-8368 JRNL PMID 10048321 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.0 REMARK 3 NUMBER OF REFLECTIONS : 20997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1230 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9305 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 0.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.041 REMARK 3 BOND ANGLES (DEGREES) : 2.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.75 REMARK 3 IMPROPER ANGLES (DEGREES) : 4.561 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 1.5 ; 300 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000007322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-97 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21801 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CJL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL, 5% 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, 12 MM AMMONIUM SULPHATE AND 9% PEG, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.20000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -0.81472 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -42.20000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 155.59787 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 57.88528 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -42.20000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 155.59787 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 83P REMARK 465 HIS B 84P REMARK 465 SER B 85P REMARK 465 SER C 83P REMARK 465 HIS C 84P REMARK 465 SER C 85P REMARK 465 ARG C 86P REMARK 465 SER C 87P REMARK 465 PRO D 81P REMARK 465 LEU D 82P REMARK 465 SER D 83P REMARK 465 HIS D 84P REMARK 465 SER D 85P REMARK 465 ARG D 86P REMARK 465 SER D 87P REMARK 465 ASN D 88P REMARK 465 ASP D 89P REMARK 465 THR D 90P REMARK 465 PRO D 94P REMARK 465 GLU D 95P REMARK 465 TRP D 96P REMARK 465 GLU D 97P REMARK 465 GLY D 98P REMARK 465 ARG D 99P REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 2P CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 5P CG CD OE1 OE2 REMARK 470 LYS A 16P CG CD CE NZ REMARK 470 ARG A 19P CG CD NE CZ NH1 NH2 REMARK 470 GLN A 21P CG CD OE1 NE2 REMARK 470 GLU A 69P CG CD OE1 OE2 REMARK 470 HIS A 84P CG ND1 CD2 CE1 NE2 REMARK 470 SER A 85P OG REMARK 470 ARG A 86P CG CD NE CZ NH1 NH2 REMARK 470 SER A 87P OG REMARK 470 ASP A 89P CG OD1 OD2 REMARK 470 THR A 90P OG1 CG2 REMARK 470 LEU A 91P CG CD1 CD2 REMARK 470 TYR A 92P CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP A 96P CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 96P CZ3 CH2 REMARK 470 GLU A 97P CG CD OE1 OE2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 TYR A 67 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 92 CG CD OE1 NE2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 ASN A 201 CG OD1 ND2 REMARK 470 TYR B 2P CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 4P CG CD OE1 OE2 REMARK 470 GLU B 5P CG CD OE1 OE2 REMARK 470 LYS B 16P CG CD CE NZ REMARK 470 ARG B 19P CG CD NE CZ NH1 NH2 REMARK 470 GLN B 21P CG CD OE1 NE2 REMARK 470 GLU B 69P CG CD OE1 OE2 REMARK 470 LYS B 79P CG CD CE NZ REMARK 470 LEU B 82P CG CD1 CD2 REMARK 470 SER B 87P OG REMARK 470 ASP B 89P CG OD1 OD2 REMARK 470 TYR B 92P CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 95P CG CD OE1 OE2 REMARK 470 TRP B 96P CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 96P CZ3 CH2 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 TYR B 67 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 79 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 92 CG CD OE1 NE2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 127 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 LYS B 191 CG CD CE NZ REMARK 470 ASN B 201 CG OD1 ND2 REMARK 470 LEU C 1P CG CD1 CD2 REMARK 470 TYR C 2P CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 4P CG CD OE1 OE2 REMARK 470 GLU C 5P CG CD OE1 OE2 REMARK 470 LYS C 16P CG CD CE NZ REMARK 470 ARG C 19P CG CD NE CZ NH1 NH2 REMARK 470 GLN C 21P CG CD OE1 NE2 REMARK 470 ASN C 23P CG OD1 ND2 REMARK 470 ASN C 24P CG OD1 ND2 REMARK 470 LYS C 25P CG CD CE NZ REMARK 470 GLU C 69P CG CD OE1 OE2 REMARK 470 LYS C 79P CG CD CE NZ REMARK 470 GLU C 95P CG CD OE1 OE2 REMARK 470 GLU C 97P CG CD OE1 OE2 REMARK 470 ARG C 99P CG CD NE CZ NH1 NH2 REMARK 470 LYS C 44 CG CD CE NZ REMARK 470 TYR C 67 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 79 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 92 CG CD OE1 NE2 REMARK 470 LYS C 119 CG CD CE NZ REMARK 470 ARG C 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 127 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 153 CG CD OE1 OE2 REMARK 470 LYS C 191 CG CD CE NZ REMARK 470 ASN C 201 CG OD1 ND2 REMARK 470 LEU D 1P CG CD1 CD2 REMARK 470 TYR D 2P CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 4P CG CD OE1 OE2 REMARK 470 LYS D 16P CG CD CE NZ REMARK 470 ARG D 19P CG CD NE CZ NH1 NH2 REMARK 470 GLN D 21P CG CD OE1 NE2 REMARK 470 ASN D 23P CG OD1 ND2 REMARK 470 ASN D 24P CG OD1 ND2 REMARK 470 LYS D 25P CG CD CE NZ REMARK 470 GLU D 69P CG CD OE1 OE2 REMARK 470 LEU D 91P CG CD1 CD2 REMARK 470 LYS D 44 CG CD CE NZ REMARK 470 TYR D 67 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 79 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 92 CG CD OE1 NE2 REMARK 470 LYS D 119 CG CD CE NZ REMARK 470 ARG D 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 127 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 153 CG CD OE1 OE2 REMARK 470 LYS D 191 CG CD CE NZ REMARK 470 ASN D 201 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 60P CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 MET B 60P CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 MET C 60P CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 MET D 60P CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 2P 118.80 72.52 REMARK 500 GLU A 5P -16.82 -47.36 REMARK 500 ASN A 61P -168.16 -126.45 REMARK 500 THR A 76P -109.35 -115.00 REMARK 500 LEU A 82P -27.84 78.94 REMARK 500 SER A 83P 85.12 -151.96 REMARK 500 SER A 85P 159.51 79.52 REMARK 500 SER A 87P -176.96 94.62 REMARK 500 ASP A 89P 47.36 -163.16 REMARK 500 TYR A 92P 102.81 170.64 REMARK 500 PRO A 94P 75.71 -104.36 REMARK 500 GLU A 95P -161.74 24.72 REMARK 500 GLN A 19 -87.52 -78.11 REMARK 500 CYS A 22 120.16 -176.09 REMARK 500 LYS A 41 -62.81 -91.12 REMARK 500 ASP A 61 30.62 -90.49 REMARK 500 TYR A 87 70.96 -162.84 REMARK 500 TYR A 151 118.09 -161.50 REMARK 500 ASN A 159 51.76 -108.94 REMARK 500 TRP A 184 30.22 -98.81 REMARK 500 LYS A 200 69.65 -109.40 REMARK 500 LEU B 7P 0.74 -69.96 REMARK 500 ASN B 61P -167.95 -127.34 REMARK 500 THR B 76P -110.16 -115.16 REMARK 500 ASN B 88P 93.11 7.22 REMARK 500 ASP B 89P -140.10 40.88 REMARK 500 LEU B 91P 58.45 -108.78 REMARK 500 GLU B 95P -149.67 21.41 REMARK 500 TRP B 96P 92.08 179.06 REMARK 500 ARG B 99P -66.74 -128.56 REMARK 500 ALA B 1 134.85 83.75 REMARK 500 GLN B 19 -88.24 -78.98 REMARK 500 CYS B 22 121.15 -177.10 REMARK 500 LYS B 41 -63.27 -90.74 REMARK 500 ASP B 61 31.93 -90.84 REMARK 500 TYR B 87 70.38 -161.78 REMARK 500 TYR B 151 118.60 -161.14 REMARK 500 ASN B 159 51.95 -109.20 REMARK 500 LYS B 200 68.48 -107.65 REMARK 500 LEU C 7P 0.55 -69.42 REMARK 500 ASN C 61P -168.08 -126.47 REMARK 500 THR C 76P -108.57 -114.85 REMARK 500 TYR C 92P 56.88 -147.83 REMARK 500 GLU C 97P -58.33 164.86 REMARK 500 ALA C 1 56.06 -151.46 REMARK 500 GLN C 19 -87.15 -78.95 REMARK 500 CYS C 22 120.67 -175.73 REMARK 500 LYS C 41 -62.69 -91.19 REMARK 500 ASP C 61 30.88 -92.07 REMARK 500 TYR C 87 70.72 -162.07 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 7PCK A 1P 215 UNP P43235 CATK_HUMAN 16 329 DBREF 7PCK B 1P 215 UNP P43235 CATK_HUMAN 16 329 DBREF 7PCK C 1P 215 UNP P43235 CATK_HUMAN 16 329 DBREF 7PCK D 1P 215 UNP P43235 CATK_HUMAN 16 329 SEQRES 1 A 314 LEU TYR PRO GLU GLU ILE LEU ASP THR HIS TRP GLU LEU SEQRES 2 A 314 TRP LYS LYS THR HIS ARG LYS GLN TYR ASN ASN LYS VAL SEQRES 3 A 314 ASP GLU ILE SER ARG ARG LEU ILE TRP GLU LYS ASN LEU SEQRES 4 A 314 LYS TYR ILE SER ILE HIS ASN LEU GLU ALA SER LEU GLY SEQRES 5 A 314 VAL HIS THR TYR GLU LEU ALA MET ASN HIS LEU GLY ASP SEQRES 6 A 314 MET THR SER GLU GLU VAL VAL GLN LYS MET THR GLY LEU SEQRES 7 A 314 LYS VAL PRO LEU SER HIS SER ARG SER ASN ASP THR LEU SEQRES 8 A 314 TYR ILE PRO GLU TRP GLU GLY ARG ALA PRO ASP SER VAL SEQRES 9 A 314 ASP TYR ARG LYS LYS GLY TYR VAL THR PRO VAL LYS ASN SEQRES 10 A 314 GLN GLY GLN CYS GLY SER CYS TRP ALA PHE SER SER VAL SEQRES 11 A 314 GLY ALA LEU GLU GLY GLN LEU LYS LYS LYS THR GLY LYS SEQRES 12 A 314 LEU LEU ASN LEU SER PRO GLN ASN LEU VAL ASP CYS VAL SEQRES 13 A 314 SER GLU ASN ASP GLY CYS GLY GLY GLY TYR MET THR ASN SEQRES 14 A 314 ALA PHE GLN TYR VAL GLN LYS ASN ARG GLY ILE ASP SER SEQRES 15 A 314 GLU ASP ALA TYR PRO TYR VAL GLY GLN GLU GLU SER CYS SEQRES 16 A 314 MET TYR ASN PRO THR GLY LYS ALA ALA LYS CYS ARG GLY SEQRES 17 A 314 TYR ARG GLU ILE PRO GLU GLY ASN GLU LYS ALA LEU LYS SEQRES 18 A 314 ARG ALA VAL ALA ARG VAL GLY PRO VAL SER VAL ALA ILE SEQRES 19 A 314 ASP ALA SER LEU THR SER PHE GLN PHE TYR SER LYS GLY SEQRES 20 A 314 VAL TYR TYR ASP GLU SER CYS ASN SER ASP ASN LEU ASN SEQRES 21 A 314 HIS ALA VAL LEU ALA VAL GLY TYR GLY ILE GLN LYS GLY SEQRES 22 A 314 ASN LYS HIS TRP ILE ILE LYS ASN SER TRP GLY GLU ASN SEQRES 23 A 314 TRP GLY ASN LYS GLY TYR ILE LEU MET ALA ARG ASN LYS SEQRES 24 A 314 ASN ASN ALA CYS GLY ILE ALA ASN LEU ALA SER PHE PRO SEQRES 25 A 314 LYS MET SEQRES 1 B 314 LEU TYR PRO GLU GLU ILE LEU ASP THR HIS TRP GLU LEU SEQRES 2 B 314 TRP LYS LYS THR HIS ARG LYS GLN TYR ASN ASN LYS VAL SEQRES 3 B 314 ASP GLU ILE SER ARG ARG LEU ILE TRP GLU LYS ASN LEU SEQRES 4 B 314 LYS TYR ILE SER ILE HIS ASN LEU GLU ALA SER LEU GLY SEQRES 5 B 314 VAL HIS THR TYR GLU LEU ALA MET ASN HIS LEU GLY ASP SEQRES 6 B 314 MET THR SER GLU GLU VAL VAL GLN LYS MET THR GLY LEU SEQRES 7 B 314 LYS VAL PRO LEU SER HIS SER ARG SER ASN ASP THR LEU SEQRES 8 B 314 TYR ILE PRO GLU TRP GLU GLY ARG ALA PRO ASP SER VAL SEQRES 9 B 314 ASP TYR ARG LYS LYS GLY TYR VAL THR PRO VAL LYS ASN SEQRES 10 B 314 GLN GLY GLN CYS GLY SER CYS TRP ALA PHE SER SER VAL SEQRES 11 B 314 GLY ALA LEU GLU GLY GLN LEU LYS LYS LYS THR GLY LYS SEQRES 12 B 314 LEU LEU ASN LEU SER PRO GLN ASN LEU VAL ASP CYS VAL SEQRES 13 B 314 SER GLU ASN ASP GLY CYS GLY GLY GLY TYR MET THR ASN SEQRES 14 B 314 ALA PHE GLN TYR VAL GLN LYS ASN ARG GLY ILE ASP SER SEQRES 15 B 314 GLU ASP ALA TYR PRO TYR VAL GLY GLN GLU GLU SER CYS SEQRES 16 B 314 MET TYR ASN PRO THR GLY LYS ALA ALA LYS CYS ARG GLY SEQRES 17 B 314 TYR ARG GLU ILE PRO GLU GLY ASN GLU LYS ALA LEU LYS SEQRES 18 B 314 ARG ALA VAL ALA ARG VAL GLY PRO VAL SER VAL ALA ILE SEQRES 19 B 314 ASP ALA SER LEU THR SER PHE GLN PHE TYR SER LYS GLY SEQRES 20 B 314 VAL TYR TYR ASP GLU SER CYS ASN SER ASP ASN LEU ASN SEQRES 21 B 314 HIS ALA VAL LEU ALA VAL GLY TYR GLY ILE GLN LYS GLY SEQRES 22 B 314 ASN LYS HIS TRP ILE ILE LYS ASN SER TRP GLY GLU ASN SEQRES 23 B 314 TRP GLY ASN LYS GLY TYR ILE LEU MET ALA ARG ASN LYS SEQRES 24 B 314 ASN ASN ALA CYS GLY ILE ALA ASN LEU ALA SER PHE PRO SEQRES 25 B 314 LYS MET SEQRES 1 C 314 LEU TYR PRO GLU GLU ILE LEU ASP THR HIS TRP GLU LEU SEQRES 2 C 314 TRP LYS LYS THR HIS ARG LYS GLN TYR ASN ASN LYS VAL SEQRES 3 C 314 ASP GLU ILE SER ARG ARG LEU ILE TRP GLU LYS ASN LEU SEQRES 4 C 314 LYS TYR ILE SER ILE HIS ASN LEU GLU ALA SER LEU GLY SEQRES 5 C 314 VAL HIS THR TYR GLU LEU ALA MET ASN HIS LEU GLY ASP SEQRES 6 C 314 MET THR SER GLU GLU VAL VAL GLN LYS MET THR GLY LEU SEQRES 7 C 314 LYS VAL PRO LEU SER HIS SER ARG SER ASN ASP THR LEU SEQRES 8 C 314 TYR ILE PRO GLU TRP GLU GLY ARG ALA PRO ASP SER VAL SEQRES 9 C 314 ASP TYR ARG LYS LYS GLY TYR VAL THR PRO VAL LYS ASN SEQRES 10 C 314 GLN GLY GLN CYS GLY SER CYS TRP ALA PHE SER SER VAL SEQRES 11 C 314 GLY ALA LEU GLU GLY GLN LEU LYS LYS LYS THR GLY LYS SEQRES 12 C 314 LEU LEU ASN LEU SER PRO GLN ASN LEU VAL ASP CYS VAL SEQRES 13 C 314 SER GLU ASN ASP GLY CYS GLY GLY GLY TYR MET THR ASN SEQRES 14 C 314 ALA PHE GLN TYR VAL GLN LYS ASN ARG GLY ILE ASP SER SEQRES 15 C 314 GLU ASP ALA TYR PRO TYR VAL GLY GLN GLU GLU SER CYS SEQRES 16 C 314 MET TYR ASN PRO THR GLY LYS ALA ALA LYS CYS ARG GLY SEQRES 17 C 314 TYR ARG GLU ILE PRO GLU GLY ASN GLU LYS ALA LEU LYS SEQRES 18 C 314 ARG ALA VAL ALA ARG VAL GLY PRO VAL SER VAL ALA ILE SEQRES 19 C 314 ASP ALA SER LEU THR SER PHE GLN PHE TYR SER LYS GLY SEQRES 20 C 314 VAL TYR TYR ASP GLU SER CYS ASN SER ASP ASN LEU ASN SEQRES 21 C 314 HIS ALA VAL LEU ALA VAL GLY TYR GLY ILE GLN LYS GLY SEQRES 22 C 314 ASN LYS HIS TRP ILE ILE LYS ASN SER TRP GLY GLU ASN SEQRES 23 C 314 TRP GLY ASN LYS GLY TYR ILE LEU MET ALA ARG ASN LYS SEQRES 24 C 314 ASN ASN ALA CYS GLY ILE ALA ASN LEU ALA SER PHE PRO SEQRES 25 C 314 LYS MET SEQRES 1 D 314 LEU TYR PRO GLU GLU ILE LEU ASP THR HIS TRP GLU LEU SEQRES 2 D 314 TRP LYS LYS THR HIS ARG LYS GLN TYR ASN ASN LYS VAL SEQRES 3 D 314 ASP GLU ILE SER ARG ARG LEU ILE TRP GLU LYS ASN LEU SEQRES 4 D 314 LYS TYR ILE SER ILE HIS ASN LEU GLU ALA SER LEU GLY SEQRES 5 D 314 VAL HIS THR TYR GLU LEU ALA MET ASN HIS LEU GLY ASP SEQRES 6 D 314 MET THR SER GLU GLU VAL VAL GLN LYS MET THR GLY LEU SEQRES 7 D 314 LYS VAL PRO LEU SER HIS SER ARG SER ASN ASP THR LEU SEQRES 8 D 314 TYR ILE PRO GLU TRP GLU GLY ARG ALA PRO ASP SER VAL SEQRES 9 D 314 ASP TYR ARG LYS LYS GLY TYR VAL THR PRO VAL LYS ASN SEQRES 10 D 314 GLN GLY GLN CYS GLY SER CYS TRP ALA PHE SER SER VAL SEQRES 11 D 314 GLY ALA LEU GLU GLY GLN LEU LYS LYS LYS THR GLY LYS SEQRES 12 D 314 LEU LEU ASN LEU SER PRO GLN ASN LEU VAL ASP CYS VAL SEQRES 13 D 314 SER GLU ASN ASP GLY CYS GLY GLY GLY TYR MET THR ASN SEQRES 14 D 314 ALA PHE GLN TYR VAL GLN LYS ASN ARG GLY ILE ASP SER SEQRES 15 D 314 GLU ASP ALA TYR PRO TYR VAL GLY GLN GLU GLU SER CYS SEQRES 16 D 314 MET TYR ASN PRO THR GLY LYS ALA ALA LYS CYS ARG GLY SEQRES 17 D 314 TYR ARG GLU ILE PRO GLU GLY ASN GLU LYS ALA LEU LYS SEQRES 18 D 314 ARG ALA VAL ALA ARG VAL GLY PRO VAL SER VAL ALA ILE SEQRES 19 D 314 ASP ALA SER LEU THR SER PHE GLN PHE TYR SER LYS GLY SEQRES 20 D 314 VAL TYR TYR ASP GLU SER CYS ASN SER ASP ASN LEU ASN SEQRES 21 D 314 HIS ALA VAL LEU ALA VAL GLY TYR GLY ILE GLN LYS GLY SEQRES 22 D 314 ASN LYS HIS TRP ILE ILE LYS ASN SER TRP GLY GLU ASN SEQRES 23 D 314 TRP GLY ASN LYS GLY TYR ILE LEU MET ALA ARG ASN LYS SEQRES 24 D 314 ASN ASN ALA CYS GLY ILE ALA ASN LEU ALA SER PHE PRO SEQRES 25 D 314 LYS MET HELIX 1 1 GLU A 5P THR A 17P 5 13 HELIX 2 2 LYS A 25P SER A 50P 1 26 HELIX 3 3 SER A 68P MET A 75P 1 8 HELIX 4 4 CYS A 25 THR A 42 1 18 HELIX 5 5 PRO A 50 CYS A 56 1 7 HELIX 6 6 GLY A 62 GLY A 64 5 3 HELIX 7 7 MET A 68 ASN A 78 1 11 HELIX 8 8 GLU A 84 ALA A 86 5 3 HELIX 9 9 PRO A 100 GLY A 102 5 3 HELIX 10 10 GLU A 118 ARG A 127 1 10 HELIX 11 11 THR A 140 GLN A 143 1 4 HELIX 12 12 ALA A 203 GLY A 205 5 3 HELIX 13 13 GLU B 5P THR B 17P 5 13 HELIX 14 14 LYS B 25P SER B 50P 1 26 HELIX 15 15 SER B 68P MET B 75P 1 8 HELIX 16 16 CYS B 25 THR B 42 1 18 HELIX 17 17 PRO B 50 CYS B 56 1 7 HELIX 18 18 GLY B 62 GLY B 64 5 3 HELIX 19 19 MET B 68 ASN B 78 1 11 HELIX 20 20 GLU B 118 ARG B 127 1 10 HELIX 21 21 THR B 140 GLN B 143 1 4 HELIX 22 22 ALA B 203 GLY B 205 5 3 HELIX 23 23 GLU C 5P THR C 17P 5 13 HELIX 24 24 LYS C 25P SER C 50P 1 26 HELIX 25 25 SER C 68P MET C 75P 1 8 HELIX 26 26 CYS C 25 THR C 42 1 18 HELIX 27 27 PRO C 50 CYS C 56 1 7 HELIX 28 28 GLY C 62 GLY C 64 5 3 HELIX 29 29 MET C 68 ASN C 78 1 11 HELIX 30 30 GLU C 84 ALA C 86 5 3 HELIX 31 31 GLU C 118 ARG C 127 1 10 HELIX 32 32 THR C 140 GLN C 143 1 4 HELIX 33 33 ALA C 203 GLY C 205 5 3 HELIX 34 34 GLU D 5P THR D 17P 5 13 HELIX 35 35 LYS D 25P SER D 50P 1 26 HELIX 36 36 SER D 68P MET D 75P 1 8 HELIX 37 37 CYS D 25 THR D 42 1 18 HELIX 38 38 PRO D 50 CYS D 56 1 7 HELIX 39 39 GLY D 62 GLY D 64 5 3 HELIX 40 40 MET D 68 ASN D 78 1 11 HELIX 41 41 GLU D 84 ALA D 86 5 3 HELIX 42 42 PRO D 100 GLY D 102 5 3 HELIX 43 43 GLU D 118 ARG D 127 1 10 HELIX 44 44 THR D 140 GLN D 143 1 4 HELIX 45 45 ALA D 203 GLY D 205 5 3 SHEET 1 A 2 TYR A 110 GLU A 112 0 SHEET 2 A 2 SER A 211 PRO A 213 -1 N PHE A 212 O ARG A 111 SHEET 1 B 4 VAL A 131 ILE A 135 0 SHEET 2 B 4 HIS A 162 GLN A 172 -1 N ALA A 166 O VAL A 131 SHEET 3 B 4 ASN A 175 LYS A 181 -1 N LYS A 181 O LEU A 165 SHEET 4 B 4 TYR A 193 ALA A 197 -1 N MET A 196 O TRP A 178 SHEET 1 C 2 TYR A 56P LEU A 58P 0 SHEET 2 C 2 TYR A 145 GLY A 148 -1 N LYS A 147 O GLU A 57P SHEET 1 D 2 TYR B 110 GLU B 112 0 SHEET 2 D 2 SER B 211 PRO B 213 -1 N PHE B 212 O ARG B 111 SHEET 1 E 4 VAL B 131 ILE B 135 0 SHEET 2 E 4 HIS B 162 GLN B 172 -1 N ALA B 166 O VAL B 131 SHEET 3 E 4 ASN B 175 LYS B 181 -1 N LYS B 181 O LEU B 165 SHEET 4 E 4 TYR B 193 ALA B 197 -1 N MET B 196 O TRP B 178 SHEET 1 F 2 TYR B 56P LEU B 58P 0 SHEET 2 F 2 TYR B 145 GLY B 148 -1 N LYS B 147 O GLU B 57P SHEET 1 G 2 TYR C 110 GLU C 112 0 SHEET 2 G 2 SER C 211 PRO C 213 -1 N PHE C 212 O ARG C 111 SHEET 1 H 4 VAL C 131 ILE C 135 0 SHEET 2 H 4 HIS C 162 GLN C 172 -1 N ALA C 166 O VAL C 131 SHEET 3 H 4 ASN C 175 LYS C 181 -1 N LYS C 181 O LEU C 165 SHEET 4 H 4 TYR C 193 ALA C 197 -1 N MET C 196 O TRP C 178 SHEET 1 I 2 TYR C 56P LEU C 58P 0 SHEET 2 I 2 TYR C 145 GLY C 148 -1 N LYS C 147 O GLU C 57P SHEET 1 J 2 TYR D 110 GLU D 112 0 SHEET 2 J 2 SER D 211 PRO D 213 -1 N PHE D 212 O ARG D 111 SHEET 1 K 4 VAL D 131 ILE D 135 0 SHEET 2 K 4 HIS D 162 GLN D 172 -1 N ALA D 166 O VAL D 131 SHEET 3 K 4 ASN D 175 LYS D 181 -1 N LYS D 181 O LEU D 165 SHEET 4 K 4 TYR D 193 ALA D 197 -1 N MET D 196 O TRP D 178 SHEET 1 L 2 TYR D 56P LEU D 58P 0 SHEET 2 L 2 TYR D 145 GLY D 148 -1 N LYS D 147 O GLU D 57P SSBOND 1 CYS A 22 CYS A 63 1555 1555 2.03 SSBOND 2 CYS A 56 CYS A 96 1555 1555 2.03 SSBOND 3 CYS A 155 CYS A 204 1555 1555 2.02 SSBOND 4 CYS B 22 CYS B 63 1555 1555 2.04 SSBOND 5 CYS B 56 CYS B 96 1555 1555 2.03 SSBOND 6 CYS B 155 CYS B 204 1555 1555 2.02 SSBOND 7 CYS C 22 CYS C 63 1555 1555 2.03 SSBOND 8 CYS C 56 CYS C 96 1555 1555 2.02 SSBOND 9 CYS C 155 CYS C 204 1555 1555 2.03 SSBOND 10 CYS D 22 CYS D 63 1555 1555 2.04 SSBOND 11 CYS D 56 CYS D 96 1555 1555 2.03 SSBOND 12 CYS D 155 CYS D 204 1555 1555 2.03 CRYST1 58.700 84.400 155.600 90.00 90.30 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017036 0.000000 0.000089 0.00000 SCALE2 0.000000 0.011848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006427 0.00000