HEADER LYASE 03-AUG-21 7PCM TITLE BURG (HOLO) IN COMPLEX WITH (Z)-2,3-DIHYDROXY-6-METHYL-HEPT-2-ENOATE TITLE 2 (13): BIOSYNTHESIS OF CYCLOPROPANOL RINGS IN BACTERIAL TOXINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOL-ACID REDUCTOISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.86; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS (STRAIN ATCC 700388 SOURCE 3 / DSM 13276 / CIP 106301 / E264); SOURCE 4 ORGANISM_TAXID: 271848; SOURCE 5 STRAIN: ATCC 700388 / DSM 13276 / CIP 106301 / E264; SOURCE 6 GENE: ILVC-2, BTH_II2094; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PATHOGENS, NATURAL PRODUCTS, TOXINS, BIOSYNTHESIS, CATALYSIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR F.TROTTMANN,K.ISHIDA,M.ISHIDA,H.KRIES,M.GROLL,C.HERTWECK REVDAT 3 31-JAN-24 7PCM 1 REMARK REVDAT 2 17-AUG-22 7PCM 1 JRNL REVDAT 1 10-AUG-22 7PCM 0 JRNL AUTH F.TROTTMANN,K.ISHIDA,M.ISHIDA-ITO,H.KRIES,M.GROLL,C.HERTWECK JRNL TITL PATHOGENIC BACTERIA REMODEL CENTRAL METABOLIC ENZYME TO JRNL TITL 2 BUILD A CYCLOPROPANOL WARHEAD. JRNL REF NAT.CHEM. V. 14 884 2022 JRNL REFN ESSN 1755-4349 JRNL PMID 35906404 JRNL DOI 10.1038/S41557-022-01005-Z REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 38214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2787 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5209 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : -1.87000 REMARK 3 B33 (A**2) : 2.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.123 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5427 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5022 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7378 ; 1.293 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11519 ; 1.173 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 679 ; 6.363 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 325 ;30.418 ;20.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;13.560 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;16.766 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 683 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6289 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1245 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10449 ; 0.670 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 341 REMARK 3 RESIDUE RANGE : A 801 A 803 REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): 14.683 23.835 -15.885 REMARK 3 T TENSOR REMARK 3 T11: 0.0005 T22: 0.0351 REMARK 3 T33: 0.0572 T12: -0.0010 REMARK 3 T13: -0.0009 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0264 L22: 0.0440 REMARK 3 L33: 0.0255 L12: -0.0002 REMARK 3 L13: 0.0016 L23: -0.0158 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: 0.0061 S13: 0.0070 REMARK 3 S21: -0.0008 S22: -0.0049 S23: 0.0059 REMARK 3 S31: 0.0027 S32: 0.0052 S33: 0.0040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 342 REMARK 3 RESIDUE RANGE : A 804 A 804 REMARK 3 RESIDUE RANGE : B 402 B 404 REMARK 3 ORIGIN FOR THE GROUP (A): 23.231 -5.544 -15.560 REMARK 3 T TENSOR REMARK 3 T11: 0.0016 T22: 0.0347 REMARK 3 T33: 0.0569 T12: 0.0003 REMARK 3 T13: -0.0008 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.0230 L22: 0.0907 REMARK 3 L33: 0.0357 L12: -0.0208 REMARK 3 L13: -0.0020 L23: 0.0336 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.0026 S13: -0.0015 REMARK 3 S21: -0.0006 S22: 0.0035 S23: 0.0019 REMARK 3 S31: 0.0041 S32: -0.0020 S33: -0.0011 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7PCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40243 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7PCC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS; 0.8 M LICL, 8% PEG 4K, 2 REMARK 280 MM NAD+, 5 MM MGCL2, 2 MM 13, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.90500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.36500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.36500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.90500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -166.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 GLN A 342 REMARK 465 ALA A 343 REMARK 465 PRO A 344 REMARK 465 ALA A 345 REMARK 465 ASP A 346 REMARK 465 VAL A 347 REMARK 465 GLU A 348 REMARK 465 PRO A 349 REMARK 465 GLU A 350 REMARK 465 ALA A 351 REMARK 465 ALA A 352 REMARK 465 ARG A 353 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 HIS B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 SER B 1 REMARK 465 ALA B 343 REMARK 465 PRO B 344 REMARK 465 ALA B 345 REMARK 465 ASP B 346 REMARK 465 VAL B 347 REMARK 465 GLU B 348 REMARK 465 PRO B 349 REMARK 465 GLU B 350 REMARK 465 ALA B 351 REMARK 465 ALA B 352 REMARK 465 ARG B 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 80 61.40 -113.21 REMARK 500 ARG A 131 41.06 -99.34 REMARK 500 ALA A 177 -62.68 -95.63 REMARK 500 PHE A 197 -62.11 -102.37 REMARK 500 TYR A 228 -24.27 -172.68 REMARK 500 SER A 298 48.08 -73.23 REMARK 500 ASN A 299 18.51 -147.74 REMARK 500 PRO B 15 -9.16 -58.95 REMARK 500 LEU B 80 58.22 -113.53 REMARK 500 ILE B 94 -61.23 -94.98 REMARK 500 ARG B 131 45.26 -98.61 REMARK 500 MET B 132 149.04 -172.43 REMARK 500 PHE B 197 -62.41 -102.91 REMARK 500 TYR B 228 -31.53 -171.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 191 OD1 REMARK 620 2 HOH A 902 O 89.5 REMARK 620 3 HOH A 922 O 82.0 168.6 REMARK 620 4 7I3 B 401 O7 165.9 84.5 102.1 REMARK 620 5 7I3 B 401 O5 86.7 85.6 86.3 80.2 REMARK 620 6 HOH B 506 O 103.3 94.7 94.6 89.9 170.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 191 OD2 REMARK 620 2 GLU A 195 OE2 89.0 REMARK 620 3 HOH A 921 O 96.1 87.9 REMARK 620 4 7I3 B 401 O1 167.0 92.1 96.9 REMARK 620 5 7I3 B 401 O5 93.9 92.9 170.0 73.1 REMARK 620 6 HOH B 530 O 89.2 172.0 100.0 88.0 79.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 805 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 247 OE1 REMARK 620 2 HOH A 916 O 94.4 REMARK 620 3 HOH B 512 O 142.3 121.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 7I3 A 804 O5 REMARK 620 2 7I3 A 804 O7 79.8 REMARK 620 3 HOH A 913 O 162.4 82.7 REMARK 620 4 ASP B 191 OD1 91.2 166.0 106.2 REMARK 620 5 HOH B 509 O 87.4 96.8 93.9 93.4 REMARK 620 6 HOH B 521 O 89.3 81.3 88.8 88.0 176.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 7I3 A 804 O1 REMARK 620 2 7I3 A 804 O5 81.8 REMARK 620 3 ASP B 191 OD2 176.2 94.9 REMARK 620 4 GLU B 195 OE2 96.0 96.6 86.1 REMARK 620 5 HOH B 534 O 88.9 87.4 89.1 174.0 REMARK 620 6 HOH B 542 O 95.2 176.5 88.1 85.4 90.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6AQJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF STAPHYLOCOCCUS AUREUS KETOL-ACID REMARK 900 REDUCTOISOMERASE IN COMPLEX WITH TWO TRANSITION STATE ANALOGS THAT REMARK 900 HAVE BIOCIDAL ACTIVITY. DBREF 7PCM A 2 353 UNP Q2T3G7 Q2T3G7_BURTA 2 353 DBREF 7PCM B 2 353 UNP Q2T3G7 Q2T3G7_BURTA 2 353 SEQADV 7PCM GLY A -4 UNP Q2T3G7 EXPRESSION TAG SEQADV 7PCM SER A -3 UNP Q2T3G7 EXPRESSION TAG SEQADV 7PCM HIS A -2 UNP Q2T3G7 EXPRESSION TAG SEQADV 7PCM MET A -1 UNP Q2T3G7 EXPRESSION TAG SEQADV 7PCM ALA A 0 UNP Q2T3G7 EXPRESSION TAG SEQADV 7PCM SER A 1 UNP Q2T3G7 EXPRESSION TAG SEQADV 7PCM GLY B -4 UNP Q2T3G7 EXPRESSION TAG SEQADV 7PCM SER B -3 UNP Q2T3G7 EXPRESSION TAG SEQADV 7PCM HIS B -2 UNP Q2T3G7 EXPRESSION TAG SEQADV 7PCM MET B -1 UNP Q2T3G7 EXPRESSION TAG SEQADV 7PCM ALA B 0 UNP Q2T3G7 EXPRESSION TAG SEQADV 7PCM SER B 1 UNP Q2T3G7 EXPRESSION TAG SEQRES 1 A 358 GLY SER HIS MET ALA SER ASN ASP LEU ILE TYR GLN ASP SEQRES 2 A 358 GLU HIS ALA SER LEU GLN PRO LEU GLU GLY ARG THR VAL SEQRES 3 A 358 ALA VAL ILE GLY TYR GLY ILE GLN GLY ARG ALA PHE ALA SEQRES 4 A 358 ALA ASN LEU ARG ASP SER GLY VAL ALA VAL ARG VAL GLY SEQRES 5 A 358 ASN ILE ASP ASP ARG TYR PHE GLU LEU ALA ARG ALA GLU SEQRES 6 A 358 GLY HIS ARG VAL THR ASN ILE ALA GLU ALA VAL ALA HIS SEQRES 7 A 358 ALA ASP ILE VAL LEU LEU LEU ILE PRO ASP GLU ALA HIS SEQRES 8 A 358 GLY ALA VAL PHE ASP VAL ASP ILE ALA PRO ASN LEU ARG SEQRES 9 A 358 ASP GLY ALA LEU LEU CYS VAL ALA HIS GLY HIS SER LEU SEQRES 10 A 358 VAL GLN GLY ASP VAL ARG PRO LEU PRO GLY ARG ASP LEU SEQRES 11 A 358 ALA MET LEU ALA PRO ARG MET TYR GLY ASP PRO ILE ARG SEQRES 12 A 358 ARG TYR TYR LEU ALA GLY GLN GLY ALA PRO ALA TYR PHE SEQRES 13 A 358 ASP ILE VAL ALA ASP HIS THR GLY ARG ALA ARG ASP ARG SEQRES 14 A 358 VAL LEU ALA ILE ALA ARG ALA VAL GLY PHE THR ARG ALA SEQRES 15 A 358 GLY VAL MET ALA LEU GLY TYR ARG GLN GLU THR PHE LEU SEQRES 16 A 358 ASP LEU PHE GLN GLU GLN PHE LEU ALA PRO ALA LEU VAL SEQRES 17 A 358 ASP LEU VAL GLU THR GLY PHE GLN VAL LEU VAL GLU ARG SEQRES 18 A 358 GLY PHE ASN PRO LYS ALA ALA LEU LEU GLU VAL TYR GLY SEQRES 19 A 358 SER GLY GLU MET GLY LYS MET MET LEU ASP GLY ALA ASP SEQRES 20 A 358 ILE GLY LEU ASP GLU VAL VAL ALA LEU GLN GLY SER PRO SEQRES 21 A 358 THR CYS GLN VAL GLY TYR HIS ARG TRP ARG GLY ARG THR SEQRES 22 A 358 LEU PRO THR ALA VAL ARG GLU LEU ALA ALA ARG VAL LEU SEQRES 23 A 358 ASP GLN ILE GLU GLY GLY ASP PHE SER ALA TYR LEU LYS SEQRES 24 A 358 GLU GLN ALA SER ASN ASP TYR ALA SER LEU ASP ASP ALA SEQRES 25 A 358 ARG ARG ALA ALA LEU LYS ARG PRO LEU ASN VAL ALA HIS SEQRES 26 A 358 ALA GLN VAL ARG ALA ALA PHE ARG PHE PRO THR GLU ALA SEQRES 27 A 358 ALA GLY GLY LEU TYR GLN ALA ALA GLN ALA PRO ALA ASP SEQRES 28 A 358 VAL GLU PRO GLU ALA ALA ARG SEQRES 1 B 358 GLY SER HIS MET ALA SER ASN ASP LEU ILE TYR GLN ASP SEQRES 2 B 358 GLU HIS ALA SER LEU GLN PRO LEU GLU GLY ARG THR VAL SEQRES 3 B 358 ALA VAL ILE GLY TYR GLY ILE GLN GLY ARG ALA PHE ALA SEQRES 4 B 358 ALA ASN LEU ARG ASP SER GLY VAL ALA VAL ARG VAL GLY SEQRES 5 B 358 ASN ILE ASP ASP ARG TYR PHE GLU LEU ALA ARG ALA GLU SEQRES 6 B 358 GLY HIS ARG VAL THR ASN ILE ALA GLU ALA VAL ALA HIS SEQRES 7 B 358 ALA ASP ILE VAL LEU LEU LEU ILE PRO ASP GLU ALA HIS SEQRES 8 B 358 GLY ALA VAL PHE ASP VAL ASP ILE ALA PRO ASN LEU ARG SEQRES 9 B 358 ASP GLY ALA LEU LEU CYS VAL ALA HIS GLY HIS SER LEU SEQRES 10 B 358 VAL GLN GLY ASP VAL ARG PRO LEU PRO GLY ARG ASP LEU SEQRES 11 B 358 ALA MET LEU ALA PRO ARG MET TYR GLY ASP PRO ILE ARG SEQRES 12 B 358 ARG TYR TYR LEU ALA GLY GLN GLY ALA PRO ALA TYR PHE SEQRES 13 B 358 ASP ILE VAL ALA ASP HIS THR GLY ARG ALA ARG ASP ARG SEQRES 14 B 358 VAL LEU ALA ILE ALA ARG ALA VAL GLY PHE THR ARG ALA SEQRES 15 B 358 GLY VAL MET ALA LEU GLY TYR ARG GLN GLU THR PHE LEU SEQRES 16 B 358 ASP LEU PHE GLN GLU GLN PHE LEU ALA PRO ALA LEU VAL SEQRES 17 B 358 ASP LEU VAL GLU THR GLY PHE GLN VAL LEU VAL GLU ARG SEQRES 18 B 358 GLY PHE ASN PRO LYS ALA ALA LEU LEU GLU VAL TYR GLY SEQRES 19 B 358 SER GLY GLU MET GLY LYS MET MET LEU ASP GLY ALA ASP SEQRES 20 B 358 ILE GLY LEU ASP GLU VAL VAL ALA LEU GLN GLY SER PRO SEQRES 21 B 358 THR CYS GLN VAL GLY TYR HIS ARG TRP ARG GLY ARG THR SEQRES 22 B 358 LEU PRO THR ALA VAL ARG GLU LEU ALA ALA ARG VAL LEU SEQRES 23 B 358 ASP GLN ILE GLU GLY GLY ASP PHE SER ALA TYR LEU LYS SEQRES 24 B 358 GLU GLN ALA SER ASN ASP TYR ALA SER LEU ASP ASP ALA SEQRES 25 B 358 ARG ARG ALA ALA LEU LYS ARG PRO LEU ASN VAL ALA HIS SEQRES 26 B 358 ALA GLN VAL ARG ALA ALA PHE ARG PHE PRO THR GLU ALA SEQRES 27 B 358 ALA GLY GLY LEU TYR GLN ALA ALA GLN ALA PRO ALA ASP SEQRES 28 B 358 VAL GLU PRO GLU ALA ALA ARG HET NAI A 801 44 HET MG A 802 1 HET MG A 803 1 HET 7I3 A 804 12 HET NA A 805 1 HET 7I3 B 401 12 HET NAI B 402 44 HET MG B 403 1 HET MG B 404 1 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM MG MAGNESIUM ION HETNAM 7I3 (Z)-6-METHYL-2,3-BIS(OXIDANYL)HEPT-2-ENOIC ACID HETNAM NA SODIUM ION HETSYN NAI NADH HETSYN 7I3 (Z)-2,3-DIHYDROXY-6-METHYL-HEPT-2-ENOATE FORMUL 3 NAI 2(C21 H29 N7 O14 P2) FORMUL 4 MG 4(MG 2+) FORMUL 6 7I3 2(C8 H14 O4) FORMUL 7 NA NA 1+ FORMUL 12 HOH *111(H2 O) HELIX 1 AA1 GLN A 7 ALA A 11 5 5 HELIX 2 AA2 LEU A 13 GLU A 17 5 5 HELIX 3 AA3 GLY A 27 SER A 40 1 14 HELIX 4 AA4 ASP A 51 GLU A 60 1 10 HELIX 5 AA5 ASN A 66 HIS A 73 1 8 HELIX 6 AA6 PRO A 82 GLU A 84 5 3 HELIX 7 AA7 ALA A 85 ASP A 93 1 9 HELIX 8 AA8 ILE A 94 LEU A 98 5 5 HELIX 9 AA9 GLY A 109 GLN A 114 1 6 HELIX 10 AB1 TYR A 133 ALA A 143 1 11 HELIX 11 AB2 ARG A 160 GLY A 173 1 14 HELIX 12 AB3 PHE A 174 ALA A 177 5 4 HELIX 13 AB4 GLY A 183 PHE A 197 1 15 HELIX 14 AB5 PHE A 197 ARG A 216 1 20 HELIX 15 AB6 ASN A 219 TYR A 228 1 10 HELIX 16 AB7 GLY A 231 GLY A 244 1 14 HELIX 17 AB8 GLY A 244 GLY A 253 1 10 HELIX 18 AB9 SER A 254 ARG A 265 1 12 HELIX 19 AC1 PRO A 270 GLY A 286 1 17 HELIX 20 AC2 GLY A 287 SER A 298 1 12 HELIX 21 AC3 TYR A 301 LEU A 312 1 12 HELIX 22 AC4 ARG A 314 PHE A 327 1 14 HELIX 23 AC5 GLN B 7 ALA B 11 5 5 HELIX 24 AC6 LEU B 13 GLU B 17 5 5 HELIX 25 AC7 GLY B 27 SER B 40 1 14 HELIX 26 AC8 ASP B 51 GLU B 60 1 10 HELIX 27 AC9 ASN B 66 HIS B 73 1 8 HELIX 28 AD1 PRO B 82 GLU B 84 5 3 HELIX 29 AD2 ALA B 85 ASP B 93 1 9 HELIX 30 AD3 GLY B 109 GLN B 114 1 6 HELIX 31 AD4 TYR B 133 ALA B 143 1 11 HELIX 32 AD5 ARG B 160 GLY B 173 1 14 HELIX 33 AD6 PHE B 174 ALA B 177 5 4 HELIX 34 AD7 GLY B 183 PHE B 197 1 15 HELIX 35 AD8 PHE B 197 ARG B 216 1 20 HELIX 36 AD9 ASN B 219 TYR B 228 1 10 HELIX 37 AE1 GLY B 231 GLY B 244 1 14 HELIX 38 AE2 GLY B 244 GLY B 253 1 10 HELIX 39 AE3 SER B 254 ARG B 265 1 12 HELIX 40 AE4 THR B 271 GLY B 286 1 16 HELIX 41 AE5 GLY B 287 ASN B 299 1 13 HELIX 42 AE6 TYR B 301 LEU B 312 1 12 HELIX 43 AE7 ARG B 314 PHE B 327 1 14 HELIX 44 AE8 ALA B 333 LEU B 337 5 5 SHEET 1 AA1 9 ILE A 5 TYR A 6 0 SHEET 2 AA1 9 VAL A 179 ALA A 181 -1 O VAL A 179 N TYR A 6 SHEET 3 AA1 9 ALA A 149 ALA A 155 1 N ALA A 149 O MET A 180 SHEET 4 AA1 9 ASP A 124 PRO A 130 -1 N ALA A 129 O TYR A 150 SHEET 5 AA1 9 LEU A 103 VAL A 106 1 N VAL A 106 O LEU A 128 SHEET 6 AA1 9 ILE A 76 LEU A 79 1 N VAL A 77 O LEU A 103 SHEET 7 AA1 9 THR A 20 ILE A 24 1 N ILE A 24 O LEU A 78 SHEET 8 AA1 9 ALA A 43 GLY A 47 1 O ARG A 45 N VAL A 23 SHEET 9 AA1 9 VAL A 64 THR A 65 1 O THR A 65 N VAL A 46 SHEET 1 AA2 9 ILE B 5 TYR B 6 0 SHEET 2 AA2 9 VAL B 179 ALA B 181 -1 O VAL B 179 N TYR B 6 SHEET 3 AA2 9 ALA B 149 ALA B 155 1 N ALA B 149 O MET B 180 SHEET 4 AA2 9 ASP B 124 PRO B 130 -1 N ALA B 129 O TYR B 150 SHEET 5 AA2 9 LEU B 103 VAL B 106 1 N VAL B 106 O LEU B 128 SHEET 6 AA2 9 ILE B 76 LEU B 79 1 N VAL B 77 O LEU B 103 SHEET 7 AA2 9 THR B 20 ILE B 24 1 N ILE B 24 O LEU B 78 SHEET 8 AA2 9 ALA B 43 GLY B 47 1 O ARG B 45 N VAL B 23 SHEET 9 AA2 9 VAL B 64 THR B 65 1 O THR B 65 N VAL B 46 LINK OD1 ASP A 191 MG MG A 802 1555 1555 2.10 LINK OD2 ASP A 191 MG MG A 803 1555 1555 1.96 LINK OE2 GLU A 195 MG MG A 803 1555 1555 2.02 LINK OE1 GLU A 247 NA NA A 805 1555 1555 2.30 LINK MG MG A 802 O HOH A 902 1555 1555 2.25 LINK MG MG A 802 O HOH A 922 1555 1555 2.06 LINK MG MG A 802 O7 7I3 B 401 1555 1555 2.02 LINK MG MG A 802 O5 7I3 B 401 1555 1555 2.44 LINK MG MG A 802 O HOH B 506 1555 1555 1.98 LINK MG MG A 803 O HOH A 921 1555 1555 2.04 LINK MG MG A 803 O1 7I3 B 401 1555 1555 2.50 LINK MG MG A 803 O5 7I3 B 401 1555 1555 1.99 LINK MG MG A 803 O HOH B 530 1555 1555 2.16 LINK O5 7I3 A 804 MG MG B 403 1555 1555 2.25 LINK O7 7I3 A 804 MG MG B 403 1555 1555 2.43 LINK O1 7I3 A 804 MG MG B 404 1555 1555 2.24 LINK O5 7I3 A 804 MG MG B 404 1555 1555 1.95 LINK NA NA A 805 O HOH A 916 1555 3544 2.67 LINK NA NA A 805 O HOH B 512 1555 1555 2.87 LINK O HOH A 913 MG MG B 403 1555 1555 2.09 LINK OD1 ASP B 191 MG MG B 403 1555 1555 1.87 LINK OD2 ASP B 191 MG MG B 404 1555 1555 2.06 LINK OE2 GLU B 195 MG MG B 404 1555 1555 2.07 LINK MG MG B 403 O HOH B 509 1555 1555 2.11 LINK MG MG B 403 O HOH B 521 1555 1555 2.27 LINK MG MG B 404 O HOH B 534 1555 1555 2.10 LINK MG MG B 404 O HOH B 542 1555 1555 2.09 CRYST1 75.810 83.610 100.730 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013191 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009928 0.00000