HEADER RNA BINDING PROTEIN 04-AUG-21 7PCU TITLE CRYSTAL STRUCTURE OF YTHDF1 YTH DOMAIN IN COMPLEX WITH EBSELEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: YTH DOMAIN-CONTAINING FAMILY PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: YTH DOMAIN (RESIDUES 361-559); COMPND 5 SYNONYM: DF1,DERMATOMYOSITIS ASSOCIATED WITH CANCER PUTATIVE COMPND 6 AUTOANTIGEN 1,DACA-1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YTHDF1, C20ORF21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MRNA BINDING AND STABILITY, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.DALLE VEDOVE,G.CAZZANELLI,A.QUATTRONE,A.PROVENZANI,G.LOLLI REVDAT 3 07-FEB-24 7PCU 1 REMARK REVDAT 2 12-APR-23 7PCU 1 COMPND HETNAM HETSYN REVDAT 1 07-DEC-22 7PCU 0 JRNL AUTH M.MICAELLI,A.DALLE VEDOVE,L.CEROFOLINI,J.VIGNA,D.SIGHEL, JRNL AUTH 2 S.ZACCARA,I.BONOMO,G.POULENTZAS,E.F.ROSATTI,G.CAZZANELLI, JRNL AUTH 3 L.ALUNNO,R.BELLI,D.PERONI,E.DASSI,S.MURAKAMI,S.R.JAFFREY, JRNL AUTH 4 M.FRAGAI,I.MANCINI,G.LOLLI,A.QUATTRONE,A.PROVENZANI JRNL TITL SMALL-MOLECULE EBSELEN BINDS TO YTHDF PROTEINS INTERFERING JRNL TITL 2 WITH THE RECOGNITION OF N 6 -METHYLADENOSINE-MODIFIED RNAS. JRNL REF ACS PHARMACOL TRANSL SCI V. 5 872 2022 JRNL REFN ESSN 2575-910 JRNL PMID 36268123 JRNL DOI 10.1021/ACSPTSCI.2C00008 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7970 - 4.8141 1.00 2895 155 0.1913 0.2267 REMARK 3 2 4.8141 - 3.8216 1.00 2762 155 0.1820 0.2403 REMARK 3 3 3.8216 - 3.3387 1.00 2702 137 0.2044 0.2655 REMARK 3 4 3.3387 - 3.0335 1.00 2701 150 0.2217 0.2854 REMARK 3 5 3.0335 - 2.8161 1.00 2686 139 0.2581 0.3066 REMARK 3 6 2.8161 - 2.6501 1.00 2691 148 0.2769 0.3441 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3141 REMARK 3 ANGLE : 0.907 4220 REMARK 3 CHIRALITY : 0.051 436 REMARK 3 PLANARITY : 0.006 541 REMARK 3 DIHEDRAL : 19.418 1886 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 363 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4654 -49.0070 -3.8191 REMARK 3 T TENSOR REMARK 3 T11: 0.5653 T22: 0.5970 REMARK 3 T33: 0.4060 T12: 0.0372 REMARK 3 T13: 0.0202 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 6.7052 L22: 3.9242 REMARK 3 L33: 4.6286 L12: 0.8132 REMARK 3 L13: 1.1990 L23: 2.1152 REMARK 3 S TENSOR REMARK 3 S11: -0.2369 S12: 0.9903 S13: -0.4065 REMARK 3 S21: -0.7025 S22: -0.0009 S23: -0.3412 REMARK 3 S31: 0.3024 S32: 0.1336 S33: -0.0103 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 390 THROUGH 531 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2070 -38.7591 5.9975 REMARK 3 T TENSOR REMARK 3 T11: 0.5429 T22: 0.5249 REMARK 3 T33: 0.4077 T12: -0.0778 REMARK 3 T13: -0.0648 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 5.7853 L22: 5.4454 REMARK 3 L33: 3.0069 L12: 1.2165 REMARK 3 L13: 0.5000 L23: -0.4656 REMARK 3 S TENSOR REMARK 3 S11: -0.1232 S12: 0.0316 S13: 0.5287 REMARK 3 S21: 0.0362 S22: -0.0106 S23: -0.1927 REMARK 3 S31: -0.4376 S32: 0.2951 S33: 0.1129 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 532 THROUGH 558 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3741 -48.2393 18.2668 REMARK 3 T TENSOR REMARK 3 T11: 0.4831 T22: 0.6583 REMARK 3 T33: 0.6245 T12: 0.0175 REMARK 3 T13: -0.0363 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 7.0973 L22: 4.8349 REMARK 3 L33: 8.3342 L12: -0.6020 REMARK 3 L13: -3.2521 L23: 1.5268 REMARK 3 S TENSOR REMARK 3 S11: -0.2197 S12: -0.3419 S13: 0.2452 REMARK 3 S21: 0.1668 S22: 0.0949 S23: 0.9188 REMARK 3 S31: -0.1892 S32: -0.9185 S33: 0.0324 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 364 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8394 -51.7685 41.4555 REMARK 3 T TENSOR REMARK 3 T11: 1.0173 T22: 0.8278 REMARK 3 T33: 0.6148 T12: -0.1424 REMARK 3 T13: 0.2384 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 3.9798 L22: 3.9542 REMARK 3 L33: 3.8467 L12: -1.0150 REMARK 3 L13: -0.9202 L23: 3.8653 REMARK 3 S TENSOR REMARK 3 S11: 0.5405 S12: -1.3296 S13: -0.0599 REMARK 3 S21: 1.9904 S22: -1.0666 S23: 1.5264 REMARK 3 S31: 0.7935 S32: -0.4679 S33: 0.3456 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 375 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9556 -30.9240 47.1632 REMARK 3 T TENSOR REMARK 3 T11: 1.4091 T22: 1.2702 REMARK 3 T33: 0.8098 T12: -0.3390 REMARK 3 T13: 0.4284 T23: -0.3049 REMARK 3 L TENSOR REMARK 3 L11: 2.6962 L22: 4.7494 REMARK 3 L33: 1.8482 L12: -0.9263 REMARK 3 L13: 2.2352 L23: -0.7423 REMARK 3 S TENSOR REMARK 3 S11: 0.2020 S12: -1.5204 S13: 0.7002 REMARK 3 S21: 1.3758 S22: 0.6647 S23: 0.0245 REMARK 3 S31: -1.2038 S32: -0.4900 S33: -0.5746 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 390 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2838 -34.6130 31.6740 REMARK 3 T TENSOR REMARK 3 T11: 0.9146 T22: 0.7478 REMARK 3 T33: 0.5359 T12: -0.2998 REMARK 3 T13: 0.2198 T23: -0.1119 REMARK 3 L TENSOR REMARK 3 L11: 4.6630 L22: 5.5027 REMARK 3 L33: 2.7190 L12: 1.3784 REMARK 3 L13: 0.5037 L23: -0.1092 REMARK 3 S TENSOR REMARK 3 S11: 0.4118 S12: -0.3616 S13: 0.5490 REMARK 3 S21: -0.4929 S22: -0.0950 S23: -0.4997 REMARK 3 S31: -0.9103 S32: 0.8444 S33: -0.2636 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 427 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0730 -30.0156 36.4610 REMARK 3 T TENSOR REMARK 3 T11: 1.1013 T22: 0.7997 REMARK 3 T33: 0.7066 T12: -0.2602 REMARK 3 T13: 0.2835 T23: -0.1027 REMARK 3 L TENSOR REMARK 3 L11: 2.1797 L22: 4.7686 REMARK 3 L33: 0.1513 L12: 0.6263 REMARK 3 L13: -0.6239 L23: 0.5779 REMARK 3 S TENSOR REMARK 3 S11: 0.8356 S12: -0.0573 S13: 0.4843 REMARK 3 S21: -0.0515 S22: -0.1185 S23: -0.3389 REMARK 3 S31: -1.1983 S32: 1.1695 S33: 0.1037 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 453 THROUGH 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1896 -36.7848 34.6892 REMARK 3 T TENSOR REMARK 3 T11: 0.7616 T22: 1.2578 REMARK 3 T33: 0.9050 T12: -0.3825 REMARK 3 T13: 0.0996 T23: -0.1815 REMARK 3 L TENSOR REMARK 3 L11: 1.6296 L22: 2.8743 REMARK 3 L33: 0.5678 L12: -1.2112 REMARK 3 L13: 0.5487 L23: -1.3101 REMARK 3 S TENSOR REMARK 3 S11: 0.3252 S12: -0.1095 S13: 0.6032 REMARK 3 S21: -0.3573 S22: 0.2419 S23: -0.6670 REMARK 3 S31: 0.3493 S32: 1.2114 S33: -0.3646 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 476 THROUGH 531 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1054 -26.2143 33.8231 REMARK 3 T TENSOR REMARK 3 T11: 1.1728 T22: 0.6366 REMARK 3 T33: 0.9300 T12: 0.0110 REMARK 3 T13: 0.2396 T23: -0.0754 REMARK 3 L TENSOR REMARK 3 L11: 5.5848 L22: 5.3900 REMARK 3 L33: 4.4250 L12: 1.7725 REMARK 3 L13: 0.3402 L23: 2.0924 REMARK 3 S TENSOR REMARK 3 S11: 0.3769 S12: -0.0044 S13: 1.2021 REMARK 3 S21: -0.6108 S22: -0.3733 S23: 0.9761 REMARK 3 S31: -1.6929 S32: -0.1132 S33: -0.0062 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 532 THROUGH 558 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0778 -53.5356 23.4810 REMARK 3 T TENSOR REMARK 3 T11: 0.5598 T22: 0.5182 REMARK 3 T33: 0.6591 T12: 0.0078 REMARK 3 T13: 0.0160 T23: 0.0789 REMARK 3 L TENSOR REMARK 3 L11: 5.8785 L22: 5.3233 REMARK 3 L33: 6.5395 L12: -0.5467 REMARK 3 L13: -3.4863 L23: 1.3179 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.1611 S13: -0.7251 REMARK 3 S21: -0.0440 S22: -0.4035 S23: -0.2470 REMARK 3 S31: 0.0185 S32: 0.4939 S33: 0.4274 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 364 THROUGH 558) REMARK 3 SELECTION : (CHAIN B AND (RESID 364 THROUGH 458 OR REMARK 3 RESID 471 THROUGH 558)) REMARK 3 ATOM PAIRS NUMBER : 1756 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PCU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117497. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9718 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17368 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 47.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 24.40 REMARK 200 R MERGE (I) : 0.20400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 25.90 REMARK 200 R MERGE FOR SHELL (I) : 1.71600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RCI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG3350, 0.2 M KSCN, PH 9.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.38750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.13000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.08125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.13000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.69375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.13000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.13000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.08125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.13000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.13000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.69375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.38750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 360 REMARK 465 SER A 361 REMARK 465 VAL A 362 REMARK 465 GLY A 459 REMARK 465 THR A 460 REMARK 465 SER A 461 REMARK 465 ALA A 462 REMARK 465 GLY A 463 REMARK 465 VAL A 464 REMARK 465 TRP A 465 REMARK 465 SER A 466 REMARK 465 GLN A 467 REMARK 465 ASP A 468 REMARK 465 LYS A 469 REMARK 465 TRP A 470 REMARK 465 GLN A 559 REMARK 465 GLY B 360 REMARK 465 SER B 361 REMARK 465 VAL B 362 REMARK 465 GLU B 363 REMARK 465 THR B 460 REMARK 465 SER B 461 REMARK 465 ALA B 462 REMARK 465 GLY B 463 REMARK 465 VAL B 464 REMARK 465 TRP B 465 REMARK 465 SER B 466 REMARK 465 GLN B 467 REMARK 465 ASP B 468 REMARK 465 LYS B 469 REMARK 465 GLN B 559 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 376 76.16 -106.87 REMARK 500 ASN A 497 55.54 -141.43 REMARK 500 ASN A 504 47.72 -108.66 REMARK 500 SER B 376 79.62 -111.65 REMARK 500 ASN B 497 53.20 -143.67 REMARK 500 ASN B 504 47.54 -106.07 REMARK 500 ASN B 557 40.11 -90.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 7PCU A 361 559 UNP Q9BYJ9 YTHD1_HUMAN 361 559 DBREF 7PCU B 361 559 UNP Q9BYJ9 YTHD1_HUMAN 361 559 SEQADV 7PCU GLY A 360 UNP Q9BYJ9 EXPRESSION TAG SEQADV 7PCU ALA A 544 UNP Q9BYJ9 GLU 544 ENGINEERED MUTATION SEQADV 7PCU VAL A 545 UNP Q9BYJ9 GLU 545 ENGINEERED MUTATION SEQADV 7PCU VAL A 546 UNP Q9BYJ9 GLU 546 ENGINEERED MUTATION SEQADV 7PCU GLY B 360 UNP Q9BYJ9 EXPRESSION TAG SEQADV 7PCU ALA B 544 UNP Q9BYJ9 GLU 544 ENGINEERED MUTATION SEQADV 7PCU VAL B 545 UNP Q9BYJ9 GLU 545 ENGINEERED MUTATION SEQADV 7PCU VAL B 546 UNP Q9BYJ9 GLU 546 ENGINEERED MUTATION SEQRES 1 A 200 GLY SER VAL GLU SER HIS PRO VAL LEU GLU LYS LEU LYS SEQRES 2 A 200 ALA ALA HIS SER TYR ASN PRO LYS GLU PHE GLU TRP ASN SEQRES 3 A 200 LEU LYS SER GLY ARG VAL PHE ILE ILE LYS SER TYR SER SEQRES 4 A 200 GLU ASP ASP ILE HIS ARG SER ILE LYS TYR SER ILE TRP SEQRES 5 A 200 CYS SER THR GLU HIS GLY ASN LYS ARG LEU ASP SER ALA SEQRES 6 A 200 PHE ARG CYS MET SER SER LYS GLY PRO VAL TYR LEU LEU SEQRES 7 A 200 PHE SER VAL ASN GLY SER GLY HIS PHE CYS GLY VAL ALA SEQRES 8 A 200 GLU MET LYS SER PRO VAL ASP TYR GLY THR SER ALA GLY SEQRES 9 A 200 VAL TRP SER GLN ASP LYS TRP LYS GLY LYS PHE ASP VAL SEQRES 10 A 200 GLN TRP ILE PHE VAL LYS ASP VAL PRO ASN ASN GLN LEU SEQRES 11 A 200 ARG HIS ILE ARG LEU GLU ASN ASN ASP ASN LYS PRO VAL SEQRES 12 A 200 THR ASN SER ARG ASP THR GLN GLU VAL PRO LEU GLU LYS SEQRES 13 A 200 ALA LYS GLN VAL LEU LYS ILE ILE SER SER TYR LYS HIS SEQRES 14 A 200 THR THR SER ILE PHE ASP ASP PHE ALA HIS TYR GLU LYS SEQRES 15 A 200 ARG GLN ALA VAL VAL GLU VAL VAL ARG LYS GLU ARG GLN SEQRES 16 A 200 SER ARG ASN LYS GLN SEQRES 1 B 200 GLY SER VAL GLU SER HIS PRO VAL LEU GLU LYS LEU LYS SEQRES 2 B 200 ALA ALA HIS SER TYR ASN PRO LYS GLU PHE GLU TRP ASN SEQRES 3 B 200 LEU LYS SER GLY ARG VAL PHE ILE ILE LYS SER TYR SER SEQRES 4 B 200 GLU ASP ASP ILE HIS ARG SER ILE LYS TYR SER ILE TRP SEQRES 5 B 200 CYS SER THR GLU HIS GLY ASN LYS ARG LEU ASP SER ALA SEQRES 6 B 200 PHE ARG CYS MET SER SER LYS GLY PRO VAL TYR LEU LEU SEQRES 7 B 200 PHE SER VAL ASN GLY SER GLY HIS PHE CYS GLY VAL ALA SEQRES 8 B 200 GLU MET LYS SER PRO VAL ASP TYR GLY THR SER ALA GLY SEQRES 9 B 200 VAL TRP SER GLN ASP LYS TRP LYS GLY LYS PHE ASP VAL SEQRES 10 B 200 GLN TRP ILE PHE VAL LYS ASP VAL PRO ASN ASN GLN LEU SEQRES 11 B 200 ARG HIS ILE ARG LEU GLU ASN ASN ASP ASN LYS PRO VAL SEQRES 12 B 200 THR ASN SER ARG ASP THR GLN GLU VAL PRO LEU GLU LYS SEQRES 13 B 200 ALA LYS GLN VAL LEU LYS ILE ILE SER SER TYR LYS HIS SEQRES 14 B 200 THR THR SER ILE PHE ASP ASP PHE ALA HIS TYR GLU LYS SEQRES 15 B 200 ARG GLN ALA VAL VAL GLU VAL VAL ARG LYS GLU ARG GLN SEQRES 16 B 200 SER ARG ASN LYS GLN HET 9JT A 601 16 HET 9JT B 601 16 HETNAM 9JT N-PHENYL-2-SELANYLBENZAMIDE HETSYN 9JT ~{N}-PHENYL-2-SELANYL-BENZAMIDE; EBSELEN, BOUND FORM FORMUL 3 9JT 2(C13 H11 N O SE) FORMUL 5 HOH *18(H2 O) HELIX 1 AA1 HIS A 365 HIS A 375 1 11 HELIX 2 AA2 SER A 398 SER A 409 1 12 HELIX 3 AA3 THR A 414 SER A 429 1 16 HELIX 4 AA4 ASN A 487 LEU A 489 5 3 HELIX 5 AA5 LEU A 494 ASP A 498 5 5 HELIX 6 AA6 PRO A 501 SER A 505 5 5 HELIX 7 AA7 PRO A 512 TYR A 526 1 15 HELIX 8 AA8 SER A 531 ASP A 534 5 4 HELIX 9 AA9 ASP A 535 LYS A 558 1 24 HELIX 10 AB1 HIS B 365 HIS B 375 1 11 HELIX 11 AB2 SER B 398 SER B 409 1 12 HELIX 12 AB3 THR B 414 CYS B 427 1 14 HELIX 13 AB4 ASN B 487 LEU B 489 5 3 HELIX 14 AB5 LEU B 494 ASP B 498 5 5 HELIX 15 AB6 PRO B 501 SER B 505 5 5 HELIX 16 AB7 PRO B 512 TYR B 526 1 15 HELIX 17 AB8 SER B 531 ASP B 534 5 4 HELIX 18 AB9 ASP B 535 ASN B 557 1 23 SHEET 1 AA1 6 ILE A 410 TRP A 411 0 SHEET 2 AA1 6 PHE A 474 PRO A 485 -1 O PHE A 474 N TRP A 411 SHEET 3 AA1 6 HIS A 445 MET A 452 -1 N PHE A 446 O VAL A 484 SHEET 4 AA1 6 VAL A 434 VAL A 440 -1 N LEU A 436 O ALA A 450 SHEET 5 AA1 6 ARG A 390 SER A 396 1 N ILE A 394 O LEU A 437 SHEET 6 AA1 6 GLN A 509 VAL A 511 -1 O VAL A 511 N VAL A 391 SHEET 1 AA2 6 ILE B 410 TRP B 411 0 SHEET 2 AA2 6 PHE B 474 PRO B 485 -1 O PHE B 474 N TRP B 411 SHEET 3 AA2 6 HIS B 445 MET B 452 -1 N VAL B 449 O ILE B 479 SHEET 4 AA2 6 VAL B 434 VAL B 440 -1 N LEU B 436 O ALA B 450 SHEET 5 AA2 6 ARG B 390 SER B 396 1 N PHE B 392 O LEU B 437 SHEET 6 AA2 6 GLN B 509 VAL B 511 -1 O GLN B 509 N ILE B 393 SSBOND 1 CYS A 427 CYS B 427 1555 8555 2.04 LINK SG CYS A 412 SE1 9JT A 601 1555 1555 2.21 LINK SG CYS B 412 SE1 9JT B 601 1555 1555 2.23 CRYST1 120.260 120.260 78.775 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008315 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012694 0.00000