HEADER TRANSFERASE 04-AUG-21 7PD5 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM HASSIACUM GLUCOSYL-3- TITLE 2 PHOSPHOGLYCERATE SYNTHASE AT PH 5.5 IN COMPLEX WITH 4-AMINOBENZOIC TITLE 3 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.266; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SEQUENCE KLAAALEHHHHHH CORRESPONDS TO THE LINKER AND COMPND 7 HEXAHISTIDINE TAG USED FOR PROTEIN PURIFICATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM HASSIACUM (STRAIN DSM 44199 / SOURCE 3 CIP 105218 / JCM 12690 / 3849); SOURCE 4 ORGANISM_COMMON: MYCOBACTERIUM HASSIACUM; SOURCE 5 ORGANISM_TAXID: 1122247; SOURCE 6 STRAIN: DSM 44199 / CIP 105218 / JCM 12690 / 3849; SOURCE 7 GENE: GPGS, C731_3243, MHAS_02845; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLUCOSE, UDP, THERMOSTABLE, TRANSFERASE, GTA-FOLD EXPDTA X-RAY DIFFRACTION AUTHOR A.SILVA,D.NUNES-COSTA,P.J.BARBOSA PEREIRA,S.MACEDO-RIBEIRO REVDAT 3 07-FEB-24 7PD5 1 REMARK REVDAT 2 01-MAR-23 7PD5 1 AUTHOR JRNL REVDAT 1 15-FEB-23 7PD5 0 JRNL AUTH A.SILVA,D.NUNES-COSTA,N.EMPADINHAS,P.J.BARBOSA PEREIRA, JRNL AUTH 2 S.MACEDO-RIBEIRO JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM HASSIACUM JRNL TITL 2 GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE AT PH 5.5 IN COMPLEX JRNL TITL 3 WITH 4-AMINOBENZOIC ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 44294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6500 - 4.9100 0.99 2696 123 0.1521 0.1693 REMARK 3 2 4.9100 - 3.9000 0.99 2647 129 0.1331 0.1457 REMARK 3 3 3.9000 - 3.4100 1.00 2635 147 0.1589 0.1986 REMARK 3 4 3.4100 - 3.1000 1.00 2630 143 0.2078 0.2083 REMARK 3 5 3.1000 - 2.8700 1.00 2659 107 0.2198 0.2673 REMARK 3 6 2.8700 - 2.7000 1.00 2648 138 0.2476 0.2873 REMARK 3 7 2.7000 - 2.5700 1.00 2627 149 0.2167 0.2510 REMARK 3 8 2.5700 - 2.4600 1.00 2643 133 0.2311 0.2506 REMARK 3 9 2.4600 - 2.3600 1.00 2641 131 0.2273 0.2202 REMARK 3 10 2.3600 - 2.2800 1.00 2632 139 0.2587 0.2975 REMARK 3 11 2.2800 - 2.2100 1.00 2627 125 0.2668 0.2694 REMARK 3 12 2.2100 - 2.1500 0.99 2639 139 0.2904 0.3111 REMARK 3 13 2.1500 - 2.0900 1.00 2588 142 0.3107 0.2996 REMARK 3 14 2.0900 - 2.0400 1.00 2648 140 0.3405 0.3728 REMARK 3 15 2.0400 - 1.9900 0.99 2570 168 0.3769 0.3854 REMARK 3 16 1.9900 - 1.9500 0.97 2587 124 0.4259 0.4312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.273 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2289 REMARK 3 ANGLE : 0.886 3132 REMARK 3 CHIRALITY : 0.056 385 REMARK 3 PLANARITY : 0.010 402 REMARK 3 DIHEDRAL : 12.749 825 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5335 -21.8072 1.0567 REMARK 3 T TENSOR REMARK 3 T11: 0.6410 T22: 1.0002 REMARK 3 T33: 0.8848 T12: -0.2042 REMARK 3 T13: 0.0422 T23: 0.2689 REMARK 3 L TENSOR REMARK 3 L11: 2.4076 L22: 5.4751 REMARK 3 L33: 2.8600 L12: -1.6826 REMARK 3 L13: 2.1418 L23: 0.1092 REMARK 3 S TENSOR REMARK 3 S11: -0.1427 S12: -0.1951 S13: 0.0289 REMARK 3 S21: -0.4739 S22: 0.3421 S23: 0.6213 REMARK 3 S31: 0.1602 S32: -1.1691 S33: -0.2123 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0235 -27.7507 11.1440 REMARK 3 T TENSOR REMARK 3 T11: 0.5413 T22: 0.4051 REMARK 3 T33: 0.4651 T12: 0.0024 REMARK 3 T13: 0.0015 T23: 0.0753 REMARK 3 L TENSOR REMARK 3 L11: 3.4363 L22: 2.7677 REMARK 3 L33: 5.3627 L12: 0.6705 REMARK 3 L13: -0.1570 L23: -0.5860 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: -0.3083 S13: -0.2887 REMARK 3 S21: 0.1737 S22: 0.0277 S23: -0.0768 REMARK 3 S31: 0.4770 S32: 0.2406 S33: -0.0529 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9609 -22.5124 -1.3689 REMARK 3 T TENSOR REMARK 3 T11: 0.6116 T22: 0.4463 REMARK 3 T33: 0.5409 T12: -0.0081 REMARK 3 T13: 0.0098 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 4.9083 L22: 1.0037 REMARK 3 L33: 5.7333 L12: -1.0868 REMARK 3 L13: -1.2970 L23: 0.3642 REMARK 3 S TENSOR REMARK 3 S11: 0.1507 S12: -0.0358 S13: 0.0440 REMARK 3 S21: -0.2131 S22: -0.0905 S23: -0.2620 REMARK 3 S31: 0.2572 S32: 0.3863 S33: -0.0510 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0905 -25.1974 6.4881 REMARK 3 T TENSOR REMARK 3 T11: 0.5564 T22: 0.6148 REMARK 3 T33: 0.5923 T12: -0.0842 REMARK 3 T13: 0.0400 T23: 0.1444 REMARK 3 L TENSOR REMARK 3 L11: 4.5398 L22: 4.3798 REMARK 3 L33: 5.1619 L12: -0.3245 REMARK 3 L13: 0.4746 L23: -1.1255 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: -0.1944 S13: 0.0461 REMARK 3 S21: 0.2778 S22: 0.1585 S23: 0.7525 REMARK 3 S31: 0.2863 S32: -0.8646 S33: -0.1812 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4581 -8.9995 0.8869 REMARK 3 T TENSOR REMARK 3 T11: 0.4398 T22: 0.6472 REMARK 3 T33: 0.4886 T12: 0.0250 REMARK 3 T13: 0.0501 T23: 0.1241 REMARK 3 L TENSOR REMARK 3 L11: 2.9965 L22: 4.7277 REMARK 3 L33: 2.3726 L12: -2.1478 REMARK 3 L13: -0.1581 L23: -1.7341 REMARK 3 S TENSOR REMARK 3 S11: -0.1131 S12: -0.6798 S13: -0.5094 REMARK 3 S21: 0.4327 S22: 0.4214 S23: 0.4032 REMARK 3 S31: 0.0890 S32: -0.6225 S33: -0.2903 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7045 -19.2737 -5.8872 REMARK 3 T TENSOR REMARK 3 T11: 0.5411 T22: 0.5926 REMARK 3 T33: 0.5038 T12: -0.0464 REMARK 3 T13: -0.0101 T23: 0.0609 REMARK 3 L TENSOR REMARK 3 L11: 3.4102 L22: 2.5292 REMARK 3 L33: 1.5221 L12: -0.1857 REMARK 3 L13: -0.3442 L23: -1.0830 REMARK 3 S TENSOR REMARK 3 S11: 0.2475 S12: -0.0779 S13: 0.0386 REMARK 3 S21: -0.1911 S22: -0.1368 S23: 0.1738 REMARK 3 S31: 0.3481 S32: -0.1749 S33: -0.0964 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4964 -16.7897 7.4513 REMARK 3 T TENSOR REMARK 3 T11: 0.6105 T22: 0.9162 REMARK 3 T33: 0.6020 T12: -0.0742 REMARK 3 T13: 0.0334 T23: 0.2317 REMARK 3 L TENSOR REMARK 3 L11: 2.1106 L22: 5.1431 REMARK 3 L33: 2.9715 L12: 0.4983 REMARK 3 L13: -1.1775 L23: -1.4251 REMARK 3 S TENSOR REMARK 3 S11: -0.1536 S12: 0.0469 S13: 0.1689 REMARK 3 S21: 0.8102 S22: 0.2118 S23: 0.5458 REMARK 3 S31: -0.7728 S32: 0.7523 S33: -0.0907 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2667 0.0818 -0.5175 REMARK 3 T TENSOR REMARK 3 T11: 0.5078 T22: 0.6817 REMARK 3 T33: 0.5943 T12: 0.0757 REMARK 3 T13: 0.0154 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 6.3461 L22: 6.2414 REMARK 3 L33: 4.7897 L12: -0.5690 REMARK 3 L13: -1.0767 L23: 0.9197 REMARK 3 S TENSOR REMARK 3 S11: -0.1264 S12: -0.6504 S13: 0.3768 REMARK 3 S21: 0.2337 S22: 0.2016 S23: -0.6683 REMARK 3 S31: -0.0970 S32: 0.6727 S33: -0.0689 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5232 -20.1553 -10.1727 REMARK 3 T TENSOR REMARK 3 T11: 0.6037 T22: 0.5871 REMARK 3 T33: 0.4845 T12: 0.0294 REMARK 3 T13: 0.0588 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: 7.1765 L22: 3.0820 REMARK 3 L33: 8.1372 L12: -0.5078 REMARK 3 L13: -0.4926 L23: 1.5359 REMARK 3 S TENSOR REMARK 3 S11: 0.0932 S12: 0.0764 S13: -0.5276 REMARK 3 S21: -0.3474 S22: -0.0007 S23: -0.1657 REMARK 3 S31: 0.6924 S32: 0.1109 S33: -0.1245 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44461 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 46.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7P8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5 3 M NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.13600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 50.13600 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.94000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.13600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.97000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.13600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.91000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.13600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.13600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.94000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 50.13600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 92.91000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 50.13600 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 30.97000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 165 REMARK 465 LEU A 166 REMARK 465 LYS A 167 REMARK 465 THR A 168 REMARK 465 SER A 169 REMARK 465 GLY A 170 REMARK 465 SER A 171 REMARK 465 GLU A 172 REMARK 465 ASP A 173 REMARK 465 ALA A 174 REMARK 465 HIS A 175 REMARK 465 GLY A 176 REMARK 465 ALA A 289 REMARK 465 ASP A 290 REMARK 465 GLY A 291 REMARK 465 ASP A 292 REMARK 465 GLU A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 16 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 ARG A 163 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 ARG A 250 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 252 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 253 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 254 CG OD1 ND2 REMARK 470 PHE A 288 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 295 OG REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 76 CA - CB - CG ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 82 -158.36 -91.60 REMARK 500 LEU A 102 79.01 -157.63 REMARK 500 VAL A 184 -63.76 -107.88 REMARK 500 ASN A 254 84.22 -67.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7P8G RELATED DB: PDB REMARK 900 GPGS APO STRUCTURE PH5.5 REMARK 900 RELATED ID: 7P5L RELATED DB: PDB REMARK 900 GPGS APO STRUCTURE PH 7.1 DBREF 7PD5 A 1 314 UNP K5B7Z4 K5B7Z4_MYCHD 1 314 SEQADV 7PD5 LYS A 315 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PD5 LEU A 316 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PD5 ALA A 317 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PD5 ALA A 318 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PD5 ALA A 319 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PD5 LEU A 320 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PD5 GLU A 321 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PD5 HIS A 322 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PD5 HIS A 323 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PD5 HIS A 324 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PD5 HIS A 325 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PD5 HIS A 326 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PD5 HIS A 327 UNP K5B7Z4 EXPRESSION TAG SEQRES 1 A 327 MET THR LEU VAL PRO ASP LEU THR ALA THR ASP LEU ALA SEQRES 2 A 327 ARG HIS ARG TRP LEU THR ASP ASN SER TRP THR ARG PRO SEQRES 3 A 327 THR TRP THR VAL ALA GLU LEU GLU ALA ALA LYS ALA GLY SEQRES 4 A 327 ARG THR ILE SER VAL VAL LEU PRO ALA LEU ASN GLU GLU SEQRES 5 A 327 GLU THR VAL GLY GLY VAL VAL GLU THR ILE ARG PRO LEU SEQRES 6 A 327 LEU GLY GLY LEU VAL ASP GLU LEU ILE VAL LEU ASP SER SEQRES 7 A 327 GLY SER THR ASP ASP THR GLU ILE ARG ALA MET ALA ALA SEQRES 8 A 327 GLY ALA ARG VAL ILE SER ARG GLU VAL ALA LEU PRO GLU SEQRES 9 A 327 VAL ALA PRO GLN PRO GLY LYS GLY GLU VAL LEU TRP ARG SEQRES 10 A 327 SER LEU ALA ALA THR THR GLY ASP ILE ILE VAL PHE ILE SEQRES 11 A 327 ASP SER ASP LEU ILE ASP PRO ASP PRO MET PHE VAL PRO SEQRES 12 A 327 LYS LEU VAL GLY PRO LEU LEU LEU SER GLU GLY VAL HIS SEQRES 13 A 327 LEU VAL LYS GLY PHE TYR ARG ARG PRO LEU LYS THR SER SEQRES 14 A 327 GLY SER GLU ASP ALA HIS GLY GLY GLY ARG VAL THR GLU SEQRES 15 A 327 LEU VAL ALA ARG PRO LEU LEU ALA ALA LEU ARG PRO GLU SEQRES 16 A 327 LEU THR CYS VAL LEU GLN PRO LEU GLY GLY GLU TYR ALA SEQRES 17 A 327 GLY THR ARG GLU LEU LEU MET SER VAL PRO PHE ALA PRO SEQRES 18 A 327 GLY TYR GLY VAL GLU ILE GLY LEU LEU VAL ASP THR TYR SEQRES 19 A 327 ASP ARG LEU GLY LEU ASP ALA ILE ALA GLN VAL ASN LEU SEQRES 20 A 327 GLY VAL ARG ALA HIS ARG ASN ARG PRO LEU THR ASP LEU SEQRES 21 A 327 ALA ALA MET SER ARG GLN VAL ILE ALA THR LEU PHE SER SEQRES 22 A 327 ARG CYS GLY VAL PRO ASP SER GLY VAL GLY LEU THR GLN SEQRES 23 A 327 PHE PHE ALA ASP GLY ASP GLY PHE SER PRO ARG THR SER SEQRES 24 A 327 GLU VAL SER LEU VAL ASP ARG PRO PRO MET ASN THR LEU SEQRES 25 A 327 ARG GLY LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 26 A 327 HIS HIS HET PAB A 401 10 HET BTB A 402 14 HET CL A 403 1 HET CL A 404 1 HET CL A 405 1 HET CL A 406 1 HET CL A 407 1 HETNAM PAB 4-AMINOBENZOIC ACID HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM CL CHLORIDE ION HETSYN BTB BIS-TRIS BUFFER FORMUL 2 PAB C7 H7 N O2 FORMUL 3 BTB C8 H19 N O5 FORMUL 4 CL 5(CL 1-) FORMUL 9 HOH *83(H2 O) HELIX 1 AA1 THR A 8 ARG A 14 1 7 HELIX 2 AA2 ARG A 16 ASN A 21 1 6 HELIX 3 AA3 THR A 29 ALA A 36 1 8 HELIX 4 AA4 THR A 54 ARG A 63 1 10 HELIX 5 AA5 PRO A 64 LEU A 66 5 3 HELIX 6 AA6 ASP A 83 ALA A 91 1 9 HELIX 7 AA7 ARG A 98 LEU A 102 1 5 HELIX 8 AA8 GLY A 110 THR A 122 1 13 HELIX 9 AA9 MET A 140 LEU A 151 1 12 HELIX 10 AB1 GLY A 178 VAL A 184 1 7 HELIX 11 AB2 VAL A 184 ARG A 193 1 10 HELIX 12 AB3 PRO A 194 VAL A 199 5 6 HELIX 13 AB4 ARG A 211 SER A 216 1 6 HELIX 14 AB5 PRO A 221 TYR A 223 5 3 HELIX 15 AB6 GLY A 224 GLY A 238 1 15 HELIX 16 AB7 PRO A 256 CYS A 275 1 20 HELIX 17 AB8 PRO A 308 ARG A 313 5 6 SHEET 1 AA1 8 SER A 22 TRP A 23 0 SHEET 2 AA1 8 ILE A 242 VAL A 249 1 O GLN A 244 N TRP A 23 SHEET 3 AA1 8 LEU A 157 ARG A 163 1 N PHE A 161 O LEU A 247 SHEET 4 AA1 8 TYR A 207 THR A 210 -1 O ALA A 208 N VAL A 158 SHEET 5 AA1 8 ILE A 126 PHE A 129 -1 N PHE A 129 O TYR A 207 SHEET 6 AA1 8 ILE A 42 ALA A 48 1 N VAL A 45 O VAL A 128 SHEET 7 AA1 8 GLU A 72 ASP A 77 1 O ILE A 74 N VAL A 44 SHEET 8 AA1 8 ARG A 94 SER A 97 1 O ARG A 94 N VAL A 75 SHEET 1 AA2 2 THR A 285 PHE A 288 0 SHEET 2 AA2 2 SER A 295 THR A 298 -1 O ARG A 297 N GLN A 286 CRYST1 100.272 100.272 123.880 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009973 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008072 0.00000