HEADER TRANSFERASE 05-AUG-21 7PDO TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM HASSIACUM GLUCOSYL-3- TITLE 2 PHOSPHOGLYCERATE SYNTHASE AT PH 5.5 IN COMPLEX WITH UDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.266; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE C-TERMINAL SEQUENCE KLAAALEHHHHHH CORRESPONDS TO COMPND 7 THE LINKER AND HEXAHISTIDINE TAG USED FOR PROTEIN PURIFICATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM HASSIACUM DSM 44199; SOURCE 3 ORGANISM_TAXID: 1122247; SOURCE 4 STRAIN: DSM 44199 / CIP 105218 / JCM 12690 / 3849; SOURCE 5 GENE: GPGS, C731_3243, MHAS_02845; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLUCOSE, UDP, THERMOSTABLE, TRANSFERASE, GTA-FOLD EXPDTA X-RAY DIFFRACTION AUTHOR A.SILVA,D.NUNES-COSTA,P.J.BARBOSA PEREIRA,S.MACEDO-RIBEIRO REVDAT 3 07-FEB-24 7PDO 1 REMARK REVDAT 2 01-MAR-23 7PDO 1 AUTHOR JRNL REVDAT 1 15-FEB-23 7PDO 0 JRNL AUTH A.SILVA,D.NUNES-COSTA,N.EMPADINHAS,P.J.BARBOSA PEREIRA, JRNL AUTH 2 S.MACEDO-RIBEIRO JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM HASSIACUM JRNL TITL 2 GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE AT PH 5.5 IN COMPLEX JRNL TITL 3 WITH UDP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 43384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5700 - 4.9600 1.00 2631 138 0.1651 0.1558 REMARK 3 2 4.9600 - 3.9400 1.00 2609 140 0.1268 0.1248 REMARK 3 3 3.9400 - 3.4400 1.00 2594 145 0.1490 0.1509 REMARK 3 4 3.4400 - 3.1300 1.00 2578 131 0.1879 0.2135 REMARK 3 5 3.1300 - 2.9000 1.00 2573 140 0.2243 0.2533 REMARK 3 6 2.9000 - 2.7300 1.00 2567 161 0.2270 0.2473 REMARK 3 7 2.7300 - 2.6000 1.00 2613 115 0.2089 0.2596 REMARK 3 8 2.5900 - 2.4800 0.99 2560 135 0.2060 0.2556 REMARK 3 9 2.4800 - 2.3900 1.00 2586 137 0.2102 0.2534 REMARK 3 10 2.3900 - 2.3000 0.99 2533 144 0.2045 0.2261 REMARK 3 11 2.3000 - 2.2300 0.99 2588 123 0.2044 0.2480 REMARK 3 12 2.2300 - 2.1700 0.99 2578 124 0.2103 0.2624 REMARK 3 13 2.1700 - 2.1100 0.99 2551 134 0.2275 0.2675 REMARK 3 14 2.1100 - 2.0600 0.99 2552 144 0.2497 0.2714 REMARK 3 15 2.0600 - 2.0100 0.99 2540 121 0.2693 0.2494 REMARK 3 16 2.0100 - 1.9700 0.99 2547 152 0.3144 0.3321 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.241 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.542 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2355 REMARK 3 ANGLE : 0.852 3221 REMARK 3 CHIRALITY : 0.054 389 REMARK 3 PLANARITY : 0.011 413 REMARK 3 DIHEDRAL : 12.247 863 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9355 -25.6785 -36.4263 REMARK 3 T TENSOR REMARK 3 T11: 0.4189 T22: 0.3285 REMARK 3 T33: 0.3247 T12: 0.1224 REMARK 3 T13: 0.0280 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 1.4222 L22: 1.7323 REMARK 3 L33: 2.2892 L12: 0.2255 REMARK 3 L13: -0.1958 L23: -0.6601 REMARK 3 S TENSOR REMARK 3 S11: 0.0705 S12: 0.0992 S13: 0.1273 REMARK 3 S21: 0.1580 S22: 0.0797 S23: 0.1716 REMARK 3 S31: -0.3832 S32: -0.3128 S33: -0.1420 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9618 -30.6525 -33.0234 REMARK 3 T TENSOR REMARK 3 T11: 0.3572 T22: 0.4573 REMARK 3 T33: 0.3350 T12: 0.0978 REMARK 3 T13: 0.0102 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 0.7464 L22: 2.8138 REMARK 3 L33: 1.8764 L12: 0.8691 REMARK 3 L13: -0.4661 L23: -0.9128 REMARK 3 S TENSOR REMARK 3 S11: 0.0652 S12: 0.1591 S13: 0.1569 REMARK 3 S21: -0.0008 S22: 0.1092 S23: 0.3234 REMARK 3 S31: -0.2420 S32: -0.4313 S33: -0.1779 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7321 -34.7010 -32.6606 REMARK 3 T TENSOR REMARK 3 T11: 0.3380 T22: 0.5627 REMARK 3 T33: 0.2978 T12: 0.0771 REMARK 3 T13: 0.0076 T23: 0.0797 REMARK 3 L TENSOR REMARK 3 L11: 3.1617 L22: 5.1692 REMARK 3 L33: 1.9590 L12: 0.1381 REMARK 3 L13: 1.4733 L23: -2.4731 REMARK 3 S TENSOR REMARK 3 S11: 0.2196 S12: 0.5524 S13: 0.1173 REMARK 3 S21: -0.3744 S22: -0.0270 S23: 0.0008 REMARK 3 S31: 0.1020 S32: 0.0192 S33: -0.1647 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4643 -49.8912 -30.1879 REMARK 3 T TENSOR REMARK 3 T11: 0.3451 T22: 0.5399 REMARK 3 T33: 0.4348 T12: -0.0493 REMARK 3 T13: -0.0262 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 4.0043 L22: 6.6582 REMARK 3 L33: 8.0960 L12: -0.9165 REMARK 3 L13: -0.7567 L23: 2.0812 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.4582 S13: -0.2041 REMARK 3 S21: -0.1909 S22: 0.1147 S23: -0.3459 REMARK 3 S31: 0.2569 S32: 0.3924 S33: -0.0703 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5105 -27.6399 -19.2941 REMARK 3 T TENSOR REMARK 3 T11: 0.4332 T22: 0.4090 REMARK 3 T33: 0.4115 T12: -0.0089 REMARK 3 T13: -0.0411 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 2.4400 L22: 9.2302 REMARK 3 L33: 4.5081 L12: 2.8278 REMARK 3 L13: 2.8155 L23: 5.9796 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.0032 S13: 0.3922 REMARK 3 S21: 0.4640 S22: 0.0547 S23: -0.5135 REMARK 3 S31: -0.4042 S32: 0.1045 S33: -0.0189 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96112 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43448 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.88100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7P8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5; 3 M NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.66900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 50.66900 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.26600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.66900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.63300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.66900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.89900 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.66900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.66900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.26600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 50.66900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 91.89900 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 50.66900 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 30.63300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -101.33800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 166 REMARK 465 LYS A 167 REMARK 465 THR A 168 REMARK 465 SER A 169 REMARK 465 GLY A 170 REMARK 465 SER A 171 REMARK 465 GLU A 172 REMARK 465 ASP A 173 REMARK 465 ALA A 174 REMARK 465 HIS A 175 REMARK 465 GLY A 176 REMARK 465 ALA A 289 REMARK 465 ASP A 290 REMARK 465 GLY A 291 REMARK 465 ASP A 292 REMARK 465 GLY A 293 REMARK 465 PHE A 294 REMARK 465 SER A 295 REMARK 465 GLU A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 14 CD NE CZ NH1 NH2 REMARK 480 ARG A 16 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 25 CD NE CZ NH1 NH2 REMARK 480 GLU A 153 CD OE1 OE2 REMARK 480 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 76 CA - CB - CG ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 78 30.13 -99.58 REMARK 500 ASP A 82 -155.61 -89.07 REMARK 500 LEU A 102 79.76 -154.03 REMARK 500 VAL A 184 -63.45 -105.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7P8G RELATED DB: PDB REMARK 900 GPGS APO (PH 5.5) REMARK 900 RELATED ID: 7P5L RELATED DB: PDB REMARK 900 GPGS APO (PH 7.1) DBREF 7PDO A 1 314 UNP K5B7Z4 K5B7Z4_MYCHD 1 314 SEQADV 7PDO LYS A 315 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PDO LEU A 316 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PDO ALA A 317 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PDO ALA A 318 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PDO ALA A 319 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PDO LEU A 320 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PDO GLU A 321 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PDO HIS A 322 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PDO HIS A 323 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PDO HIS A 324 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PDO HIS A 325 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PDO HIS A 326 UNP K5B7Z4 EXPRESSION TAG SEQRES 1 A 326 MET THR LEU VAL PRO ASP LEU THR ALA THR ASP LEU ALA SEQRES 2 A 326 ARG HIS ARG TRP LEU THR ASP ASN SER TRP THR ARG PRO SEQRES 3 A 326 THR TRP THR VAL ALA GLU LEU GLU ALA ALA LYS ALA GLY SEQRES 4 A 326 ARG THR ILE SER VAL VAL LEU PRO ALA LEU ASN GLU GLU SEQRES 5 A 326 GLU THR VAL GLY GLY VAL VAL GLU THR ILE ARG PRO LEU SEQRES 6 A 326 LEU GLY GLY LEU VAL ASP GLU LEU ILE VAL LEU ASP SER SEQRES 7 A 326 GLY SER THR ASP ASP THR GLU ILE ARG ALA MET ALA ALA SEQRES 8 A 326 GLY ALA ARG VAL ILE SER ARG GLU VAL ALA LEU PRO GLU SEQRES 9 A 326 VAL ALA PRO GLN PRO GLY LYS GLY GLU VAL LEU TRP ARG SEQRES 10 A 326 SER LEU ALA ALA THR THR GLY ASP ILE ILE VAL PHE ILE SEQRES 11 A 326 ASP SER ASP LEU ILE ASP PRO ASP PRO MET PHE VAL PRO SEQRES 12 A 326 LYS LEU VAL GLY PRO LEU LEU LEU SER GLU GLY VAL HIS SEQRES 13 A 326 LEU VAL LYS GLY PHE TYR ARG ARG PRO LEU LYS THR SER SEQRES 14 A 326 GLY SER GLU ASP ALA HIS GLY GLY GLY ARG VAL THR GLU SEQRES 15 A 326 LEU VAL ALA ARG PRO LEU LEU ALA ALA LEU ARG PRO GLU SEQRES 16 A 326 LEU THR CYS VAL LEU GLN PRO LEU GLY GLY GLU TYR ALA SEQRES 17 A 326 GLY THR ARG GLU LEU LEU MET SER VAL PRO PHE ALA PRO SEQRES 18 A 326 GLY TYR GLY VAL GLU ILE GLY LEU LEU VAL ASP THR TYR SEQRES 19 A 326 ASP ARG LEU GLY LEU ASP ALA ILE ALA GLN VAL ASN LEU SEQRES 20 A 326 GLY VAL ARG ALA HIS ARG ASN ARG PRO LEU THR ASP LEU SEQRES 21 A 326 ALA ALA MET SER ARG GLN VAL ILE ALA THR LEU PHE SER SEQRES 22 A 326 ARG CYS GLY VAL PRO ASP SER GLY VAL GLY LEU THR GLN SEQRES 23 A 326 PHE PHE ALA ASP GLY ASP GLY PHE SER PRO ARG THR SER SEQRES 24 A 326 GLU VAL SER LEU VAL ASP ARG PRO PRO MET ASN THR LEU SEQRES 25 A 326 ARG GLY LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 26 A 326 HIS HET CL A 401 1 HET CL A 402 1 HET UDP A 403 25 HET CL A 404 1 HET CL A 405 1 HETNAM CL CHLORIDE ION HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 2 CL 4(CL 1-) FORMUL 4 UDP C9 H14 N2 O12 P2 FORMUL 7 HOH *183(H2 O) HELIX 1 AA1 THR A 8 ARG A 14 1 7 HELIX 2 AA2 ARG A 16 ASN A 21 1 6 HELIX 3 AA3 THR A 29 ALA A 36 1 8 HELIX 4 AA4 THR A 54 ARG A 63 1 10 HELIX 5 AA5 PRO A 64 LEU A 66 5 3 HELIX 6 AA6 ASP A 83 ALA A 91 1 9 HELIX 7 AA7 ARG A 98 LEU A 102 1 5 HELIX 8 AA8 GLY A 110 THR A 122 1 13 HELIX 9 AA9 MET A 140 LEU A 151 1 12 HELIX 10 AB1 GLY A 178 VAL A 184 1 7 HELIX 11 AB2 VAL A 184 ARG A 193 1 10 HELIX 12 AB3 PRO A 194 VAL A 199 5 6 HELIX 13 AB4 ARG A 211 SER A 216 1 6 HELIX 14 AB5 PRO A 221 TYR A 223 5 3 HELIX 15 AB6 GLY A 224 GLY A 238 1 15 HELIX 16 AB7 PRO A 256 CYS A 275 1 20 HELIX 17 AB8 PRO A 308 ARG A 313 5 6 SHEET 1 AA1 8 SER A 22 TRP A 23 0 SHEET 2 AA1 8 ILE A 242 VAL A 249 1 O ASN A 246 N TRP A 23 SHEET 3 AA1 8 LEU A 157 ARG A 163 1 N PHE A 161 O LEU A 247 SHEET 4 AA1 8 TYR A 207 THR A 210 -1 O ALA A 208 N VAL A 158 SHEET 5 AA1 8 ILE A 126 PHE A 129 -1 N PHE A 129 O TYR A 207 SHEET 6 AA1 8 ILE A 42 ALA A 48 1 N VAL A 45 O VAL A 128 SHEET 7 AA1 8 GLU A 72 ASP A 77 1 O ILE A 74 N VAL A 44 SHEET 8 AA1 8 ARG A 94 SER A 97 1 O ARG A 94 N VAL A 75 SHEET 1 AA2 2 LEU A 284 GLN A 286 0 SHEET 2 AA2 2 ARG A 297 SER A 299 -1 O ARG A 297 N GLN A 286 CRYST1 101.338 101.338 122.532 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009868 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008161 0.00000