HEADER NUCLEAR PROTEIN 06-AUG-21 7PDQ TITLE CRYSTAL STRUCTURE OF A MUTATED FORM OF RXRALPHA LIGAND BINDING DOMAIN TITLE 2 IN COMPLEX WITH LG100268 AND A COACTIVATOR FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1,RETINOID X COMPND 5 RECEPTOR ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 11 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RXRA, NR2B1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR HORMONE RECEPTOR, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.LE MAIRE,W.BOURGUET,L.GUEE REVDAT 4 31-JAN-24 7PDQ 1 REMARK REVDAT 3 17-AUG-22 7PDQ 1 JRNL REVDAT 2 10-AUG-22 7PDQ 1 JRNL REMARK REVDAT 1 03-AUG-22 7PDQ 0 JRNL AUTH A.LE MAIRE,M.REY,V.VIVAT,L.GUEE,P.BLANC,C.MALOSSE, JRNL AUTH 2 J.CHAMOT-ROOKE,P.GERMAIN,W.BOURGUET JRNL TITL DESIGN AND IN VITRO CHARACTERIZATION OF RXR VARIANTS AS JRNL TITL 2 TOOLS TO INVESTIGATE THE BIOLOGICAL ROLE OF ENDOGENOUS JRNL TITL 3 REXINOIDS. JRNL REF J.MOL.ENDOCRINOL. V. 69 377 2022 JRNL REFN ISSN 0952-5041 JRNL PMID 35900852 JRNL DOI 10.1530/JME-22-0021 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 34557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3900 - 3.6200 1.00 3017 147 0.1594 0.1791 REMARK 3 2 3.6100 - 2.8700 1.00 2862 132 0.1663 0.2034 REMARK 3 3 2.8700 - 2.5100 1.00 2805 153 0.1807 0.2058 REMARK 3 4 2.5100 - 2.2800 1.00 2783 154 0.1675 0.1794 REMARK 3 5 2.2800 - 2.1100 1.00 2775 139 0.1675 0.1689 REMARK 3 6 2.1100 - 1.9900 1.00 2748 154 0.1764 0.2128 REMARK 3 7 1.9900 - 1.8900 1.00 2756 145 0.1811 0.1931 REMARK 3 8 1.8900 - 1.8100 1.00 2738 157 0.1732 0.2098 REMARK 3 9 1.8100 - 1.7400 1.00 2731 146 0.1821 0.2101 REMARK 3 10 1.7400 - 1.6800 1.00 2733 126 0.1938 0.2045 REMARK 3 11 1.6800 - 1.6300 0.98 2667 152 0.2023 0.2085 REMARK 3 12 1.6300 - 1.5800 0.81 2234 103 0.2711 0.3139 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.157 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.542 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1828 REMARK 3 ANGLE : 1.620 2482 REMARK 3 CHIRALITY : 0.092 281 REMARK 3 PLANARITY : 0.009 312 REMARK 3 DIHEDRAL : 21.065 690 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 419 THROUGH 462 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4666 1.0356 -25.6595 REMARK 3 T TENSOR REMARK 3 T11: 0.1414 T22: 0.0949 REMARK 3 T33: 0.0953 T12: -0.0127 REMARK 3 T13: -0.0216 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 6.1225 L22: 1.6780 REMARK 3 L33: 1.3234 L12: -2.0123 REMARK 3 L13: -1.7707 L23: 0.4813 REMARK 3 S TENSOR REMARK 3 S11: 0.1199 S12: 0.1152 S13: 0.1878 REMARK 3 S21: -0.0006 S22: -0.0510 S23: 0.0598 REMARK 3 S31: -0.0736 S32: -0.1387 S33: -0.0823 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 686 THROUGH 697 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7803 -8.4255 -8.7062 REMARK 3 T TENSOR REMARK 3 T11: 0.2292 T22: 0.2645 REMARK 3 T33: 0.2125 T12: -0.0412 REMARK 3 T13: 0.0193 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 7.2655 L22: 2.7124 REMARK 3 L33: 4.1715 L12: 0.9800 REMARK 3 L13: 1.6690 L23: 3.1037 REMARK 3 S TENSOR REMARK 3 S11: -0.2690 S12: -0.6054 S13: 0.3790 REMARK 3 S21: 0.5883 S22: 0.0504 S23: 0.0464 REMARK 3 S31: -0.2299 S32: 0.0745 S33: 0.1293 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3233 -13.7157 -20.3972 REMARK 3 T TENSOR REMARK 3 T11: 0.1908 T22: 0.0804 REMARK 3 T33: 0.1366 T12: -0.0329 REMARK 3 T13: 0.0015 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.0531 L22: 2.5379 REMARK 3 L33: 1.7328 L12: -0.8229 REMARK 3 L13: 0.3286 L23: -1.0436 REMARK 3 S TENSOR REMARK 3 S11: 0.0905 S12: -0.1151 S13: -0.4176 REMARK 3 S21: 0.0157 S22: 0.0148 S23: 0.1403 REMARK 3 S31: 0.3163 S32: -0.0670 S33: -0.1282 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 368 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7848 -5.7409 -32.8700 REMARK 3 T TENSOR REMARK 3 T11: 0.1188 T22: 0.0826 REMARK 3 T33: 0.1356 T12: -0.0166 REMARK 3 T13: -0.0051 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.3225 L22: 0.8844 REMARK 3 L33: 2.6415 L12: -0.2926 REMARK 3 L13: 1.0949 L23: -0.5290 REMARK 3 S TENSOR REMARK 3 S11: 0.0669 S12: 0.0719 S13: -0.0924 REMARK 3 S21: -0.0932 S22: -0.0040 S23: 0.0565 REMARK 3 S31: 0.0846 S32: -0.0291 S33: -0.0609 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 369 THROUGH 418 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5485 -11.4165 -21.0749 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.0853 REMARK 3 T33: 0.1294 T12: 0.0244 REMARK 3 T13: -0.0249 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 3.3177 L22: 2.4790 REMARK 3 L33: 3.9430 L12: -1.6698 REMARK 3 L13: -1.9577 L23: 1.7104 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.1869 S13: -0.0846 REMARK 3 S21: 0.0988 S22: 0.0906 S23: -0.1408 REMARK 3 S31: 0.2620 S32: 0.2295 S33: -0.1129 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34564 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.579 REMARK 200 RESOLUTION RANGE LOW (A) : 48.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 22.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6STI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG3350, 0.2M NAF, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.80750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.21500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.21500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.21125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.21500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.21500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.40375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.21500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.21500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.21125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.21500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.21500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.40375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.80750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -52.80750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 743 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 842 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 900 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 HIS A 225 REMARK 465 MET A 226 REMARK 465 SER A 227 REMARK 465 THR A 228 REMARK 465 SER A 229 REMARK 465 SER A 230 REMARK 465 ALA A 231 REMARK 465 ASN A 232 REMARK 465 GLU A 233 REMARK 465 VAL A 247 REMARK 465 GLU A 248 REMARK 465 PRO A 249 REMARK 465 LYS A 250 REMARK 465 THR A 251 REMARK 465 GLU A 252 REMARK 465 THR A 253 REMARK 465 TYR A 254 REMARK 465 VAL A 255 REMARK 465 GLU A 256 REMARK 465 ALA A 257 REMARK 465 ASN A 258 REMARK 465 MET A 259 REMARK 465 GLY A 260 REMARK 465 LEU A 261 REMARK 465 ASN A 262 REMARK 465 PRO A 263 REMARK 465 SER A 264 REMARK 465 SER A 265 REMARK 465 PRO A 266 REMARK 465 ASN A 267 REMARK 465 PRO A 463 REMARK 465 HIS A 464 REMARK 465 GLN A 465 REMARK 465 ALA A 466 REMARK 465 THR A 467 REMARK 465 SER B 698 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 697 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 293 -6.55 78.91 REMARK 500 ASN A 390 83.08 -151.38 REMARK 500 GLN A 416 76.62 -118.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 912 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 913 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 914 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 915 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 916 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 917 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A 918 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH A 919 DISTANCE = 9.65 ANGSTROMS DBREF 7PDQ A 227 467 UNP P28700 RXRA_MOUSE 227 467 DBREF 7PDQ B 686 698 UNP Q15596 NCOA2_HUMAN 686 698 SEQADV 7PDQ GLY A 223 UNP P28700 EXPRESSION TAG SEQADV 7PDQ PRO A 224 UNP P28700 EXPRESSION TAG SEQADV 7PDQ HIS A 225 UNP P28700 EXPRESSION TAG SEQADV 7PDQ MET A 226 UNP P28700 EXPRESSION TAG SEQADV 7PDQ GLU A 321 UNP P28700 ARG 321 ENGINEERED MUTATION SEQADV 7PDQ GLN A 437 UNP P28700 CYS 437 ENGINEERED MUTATION SEQRES 1 A 245 GLY PRO HIS MET SER THR SER SER ALA ASN GLU ASP MET SEQRES 2 A 245 PRO VAL GLU LYS ILE LEU GLU ALA GLU LEU ALA VAL GLU SEQRES 3 A 245 PRO LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU SEQRES 4 A 245 ASN PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS SEQRES 5 A 245 GLN ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP SEQRES 6 A 245 ALA LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP SEQRES 7 A 245 ASP GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU SEQRES 8 A 245 LEU ILE ALA SER PHE SER HIS GLU SER ILE ALA VAL LYS SEQRES 9 A 245 ASP GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG SEQRES 10 A 245 ASN SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP SEQRES 11 A 245 ARG VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET SEQRES 12 A 245 GLN MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE SEQRES 13 A 245 VAL LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO SEQRES 14 A 245 ALA GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER SEQRES 15 A 245 LEU GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO SEQRES 16 A 245 GLY ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU SEQRES 17 A 245 ARG SER ILE GLY LEU LYS GLN LEU GLU HIS LEU PHE PHE SEQRES 18 A 245 PHE LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU SEQRES 19 A 245 MET GLU MET LEU GLU ALA PRO HIS GLN ALA THR SEQRES 1 B 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER HET LG2 A 501 55 HETNAM LG2 6-[1-(3,5,5,8,8-PENTAMETHYL-5,6,7,8- HETNAM 2 LG2 TETRAHYDRONAPHTHALEN-2-YL)CYCLOPROPYL]PYRIDINE-3- HETNAM 3 LG2 CARBOXYLIC ACID FORMUL 3 LG2 C24 H29 N O2 FORMUL 4 HOH *333(H2 O) HELIX 1 AA1 PRO A 236 ALA A 246 1 11 HELIX 2 AA2 PRO A 269 ILE A 291 1 23 HELIX 3 AA3 HIS A 293 LEU A 297 5 5 HELIX 4 AA4 PRO A 298 SER A 322 1 25 HELIX 5 AA5 ARG A 339 ALA A 345 1 7 HELIX 6 AA6 VAL A 347 LEU A 358 1 12 HELIX 7 AA7 LEU A 358 GLN A 366 1 9 HELIX 8 AA8 ASP A 368 PHE A 381 1 14 HELIX 9 AA9 ASN A 390 TYR A 413 1 24 HELIX 10 AB1 GLY A 418 LEU A 425 1 8 HELIX 11 AB2 ARG A 426 GLY A 448 1 23 HELIX 12 AB3 ASP A 453 LEU A 460 1 8 HELIX 13 AB4 HIS B 687 ASP B 696 1 10 SHEET 1 AA1 2 GLY A 328 LEU A 330 0 SHEET 2 AA1 2 HIS A 336 HIS A 338 -1 O VAL A 337 N ILE A 329 CRYST1 68.430 68.430 105.615 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009468 0.00000