HEADER TRANSFERASE 09-AUG-21 7PE4 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM HASSIACUM GLUCOSYL-3- TITLE 2 PHOSPHOGLYCERATE SYNTHASE AT PH 5.5 IN COMPLEX WITH UDP-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.266; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE C-TERMINAL SEQUENCE KLAAALEHHHHHH CORRESPONDS TO COMPND 7 THE LINKER AND HEXAHISTIDINE TAG USED FOR PROTEIN PURIFICATION. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM HASSIACUM (STRAIN DSM 44199 / SOURCE 3 CIP 105218 / JCM 12690 / 3849); SOURCE 4 ORGANISM_COMMON: MYCOBACTERIUM HASSIACUM; SOURCE 5 ORGANISM_TAXID: 1122247; SOURCE 6 STRAIN: DSM 44199 / CIP 105218 / JCM 12690 / 3849; SOURCE 7 GENE: GPGS, C731_3243, MHAS_02845; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUCOSE, UDP-GLUCOSE, THERMOSTABLE, TRANSFERASE, GTA-FOLD EXPDTA X-RAY DIFFRACTION AUTHOR A.SILVA,P.J.BARBOSA PEREIRA,S.MACEDO-RIBEIRO REVDAT 3 07-FEB-24 7PE4 1 REMARK REVDAT 2 01-MAR-23 7PE4 1 AUTHOR JRNL REVDAT 1 22-FEB-23 7PE4 0 JRNL AUTH A.SILVA,D.NUNES-COSTA,N.EMPADINHAS,P.J.BARBOSA PEREIRA, JRNL AUTH 2 S.MACEDO-RIBEIRO JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM HASSIACUM JRNL TITL 2 GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE AT PH 5.5 IN COMPLEX JRNL TITL 3 WITH UDP-GLUCOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5800 - 4.9400 1.00 2679 142 0.1582 0.1730 REMARK 3 2 4.9400 - 3.9200 1.00 2668 125 0.1153 0.1456 REMARK 3 3 3.9200 - 3.4300 1.00 2673 147 0.1217 0.1377 REMARK 3 4 3.4300 - 3.1100 1.00 2639 141 0.1470 0.1860 REMARK 3 5 3.1100 - 2.8900 1.00 2646 141 0.1772 0.2032 REMARK 3 6 2.8900 - 2.7200 1.00 2646 136 0.1797 0.2308 REMARK 3 7 2.7200 - 2.5800 1.00 2648 135 0.1804 0.2200 REMARK 3 8 2.5800 - 2.4700 1.00 2594 162 0.1874 0.2158 REMARK 3 9 2.4700 - 2.3800 1.00 2637 134 0.1885 0.2772 REMARK 3 10 2.3800 - 2.2900 1.00 2648 139 0.1950 0.2479 REMARK 3 11 2.2900 - 2.2200 1.00 2632 144 0.2032 0.2339 REMARK 3 12 2.2200 - 2.1600 1.00 2630 129 0.2274 0.2614 REMARK 3 13 2.1600 - 2.1000 0.99 2593 129 0.2502 0.2870 REMARK 3 14 2.1000 - 2.0500 0.99 2595 146 0.2773 0.3030 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.233 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2477 REMARK 3 ANGLE : 0.808 3395 REMARK 3 CHIRALITY : 0.051 409 REMARK 3 PLANARITY : 0.011 440 REMARK 3 DIHEDRAL : 12.385 926 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4543 -25.1546 4.2526 REMARK 3 T TENSOR REMARK 3 T11: 0.3341 T22: 0.3068 REMARK 3 T33: 0.3034 T12: -0.1260 REMARK 3 T13: -0.0110 T23: 0.0597 REMARK 3 L TENSOR REMARK 3 L11: 0.9213 L22: 2.0828 REMARK 3 L33: 2.2173 L12: -0.2233 REMARK 3 L13: 0.3344 L23: -0.4933 REMARK 3 S TENSOR REMARK 3 S11: 0.0886 S12: -0.0691 S13: -0.1958 REMARK 3 S21: -0.1403 S22: 0.0704 S23: 0.2740 REMARK 3 S31: 0.3399 S32: -0.3306 S33: -0.1221 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4713 -24.0958 0.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.3051 T22: 0.1733 REMARK 3 T33: 0.2566 T12: -0.0011 REMARK 3 T13: -0.0259 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 5.2064 L22: 1.7570 REMARK 3 L33: 5.4643 L12: -0.0826 REMARK 3 L13: -2.4978 L23: -0.0550 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: -0.0918 S13: -0.0233 REMARK 3 S21: 0.0072 S22: -0.0175 S23: -0.1208 REMARK 3 S31: 0.1881 S32: 0.1235 S33: -0.0628 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0038 -26.3441 1.6571 REMARK 3 T TENSOR REMARK 3 T11: 0.3014 T22: 0.3475 REMARK 3 T33: 0.3632 T12: -0.1225 REMARK 3 T13: -0.0389 T23: 0.1279 REMARK 3 L TENSOR REMARK 3 L11: 6.0810 L22: 8.8906 REMARK 3 L33: 6.1234 L12: 1.2166 REMARK 3 L13: 0.5228 L23: 0.8692 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: 0.0478 S13: -0.2945 REMARK 3 S21: -0.3170 S22: 0.2039 S23: 0.7657 REMARK 3 S31: 0.1431 S32: -0.6739 S33: -0.1899 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2674 -6.0959 2.2256 REMARK 3 T TENSOR REMARK 3 T11: 0.3500 T22: 0.4962 REMARK 3 T33: 0.3861 T12: -0.0045 REMARK 3 T13: 0.0728 T23: 0.0877 REMARK 3 L TENSOR REMARK 3 L11: 4.1334 L22: 6.1242 REMARK 3 L33: 0.5544 L12: -0.1780 REMARK 3 L13: -0.0998 L23: 1.5780 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.9968 S13: -0.3504 REMARK 3 S21: 0.7384 S22: -0.0984 S23: 0.2313 REMARK 3 S31: 0.5910 S32: -0.3664 S33: 0.0904 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9112 -17.5269 -6.3822 REMARK 3 T TENSOR REMARK 3 T11: 0.3028 T22: 0.3336 REMARK 3 T33: 0.3187 T12: -0.0679 REMARK 3 T13: 0.0066 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 2.9772 L22: 3.1438 REMARK 3 L33: 2.8475 L12: -1.9590 REMARK 3 L13: 0.8526 L23: -0.1805 REMARK 3 S TENSOR REMARK 3 S11: 0.1285 S12: -0.1101 S13: -0.0668 REMARK 3 S21: -0.1578 S22: -0.0508 S23: 0.1826 REMARK 3 S31: 0.2848 S32: -0.2143 S33: -0.0765 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4202 -15.6395 6.9588 REMARK 3 T TENSOR REMARK 3 T11: 0.3755 T22: 0.4880 REMARK 3 T33: 0.3731 T12: -0.0862 REMARK 3 T13: -0.0402 T23: 0.1005 REMARK 3 L TENSOR REMARK 3 L11: 3.9840 L22: 5.4668 REMARK 3 L33: 1.3433 L12: 2.3567 REMARK 3 L13: -2.1702 L23: -2.0743 REMARK 3 S TENSOR REMARK 3 S11: 0.2867 S12: -0.6706 S13: 0.2723 REMARK 3 S21: 0.9114 S22: -0.4830 S23: 0.1748 REMARK 3 S31: -0.2550 S32: 0.3799 S33: 0.2355 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2050 -1.0652 -3.4027 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.3282 REMARK 3 T33: 0.3355 T12: 0.0481 REMARK 3 T13: 0.0259 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 5.9623 L22: 6.0135 REMARK 3 L33: 5.2607 L12: 1.1875 REMARK 3 L13: 0.4117 L23: -1.0365 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: -0.5696 S13: 0.0949 REMARK 3 S21: 0.1060 S22: -0.0559 S23: -0.3350 REMARK 3 S31: -0.2004 S32: -0.0408 S33: 0.0756 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 290 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0112 -11.5732 -7.0948 REMARK 3 T TENSOR REMARK 3 T11: 0.1898 T22: 0.3796 REMARK 3 T33: 0.2924 T12: 0.0163 REMARK 3 T13: 0.0379 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 3.1986 L22: 3.4899 REMARK 3 L33: 5.9833 L12: 0.0988 REMARK 3 L13: 0.2092 L23: 2.2865 REMARK 3 S TENSOR REMARK 3 S11: 0.0726 S12: -0.3577 S13: 0.1238 REMARK 3 S21: 0.0384 S22: -0.0470 S23: -0.5501 REMARK 3 S31: 0.0969 S32: 0.0625 S33: -0.0795 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96112 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : 0.96112 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38917 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.97300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7P8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5; 3 M NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.94350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 50.94350 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.04900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.94350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.52450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.94350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.57350 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.94350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.94350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.04900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 50.94350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 91.57350 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 50.94350 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 30.52450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 760 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 166 REMARK 465 LYS A 167 REMARK 465 THR A 168 REMARK 465 SER A 169 REMARK 465 GLY A 170 REMARK 465 SER A 171 REMARK 465 GLU A 172 REMARK 465 ASP A 173 REMARK 465 ALA A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 16 CD NE CZ NH1 NH2 REMARK 480 ARG A 25 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 82 -154.32 -84.91 REMARK 500 LEU A 102 79.59 -157.82 REMARK 500 LEU A 102 80.65 -155.92 REMARK 500 ASP A 290 -83.46 -132.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 117 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 801 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 802 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 803 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 804 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 805 DISTANCE = 6.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 133 OD2 REMARK 620 2 UPG A 401 O2A 89.0 REMARK 620 3 UPG A 401 O1B 171.9 91.8 REMARK 620 4 HOH A 565 O 88.4 113.8 83.9 REMARK 620 5 HOH A 662 O 100.7 141.0 83.7 104.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7P8G RELATED DB: PDB REMARK 900 GPGS APO PH 5.5 REMARK 900 RELATED ID: 7PD5 RELATED DB: PDB REMARK 900 GPGS IN COMPLEX WITH PABA, PH 5.5 REMARK 900 RELATED ID: 7PDO RELATED DB: PDB REMARK 900 GPGS IN COMPLEX WITH UDP, PH5.5 DBREF 7PE4 A 1 314 UNP K5B7Z4 K5B7Z4_MYCHD 1 314 SEQADV 7PE4 LYS A 315 UNP K5B7Z4 LINKER SEQADV 7PE4 LEU A 316 UNP K5B7Z4 LINKER SEQADV 7PE4 ALA A 317 UNP K5B7Z4 LINKER SEQADV 7PE4 ALA A 318 UNP K5B7Z4 LINKER SEQADV 7PE4 ALA A 319 UNP K5B7Z4 LINKER SEQADV 7PE4 LEU A 320 UNP K5B7Z4 LINKER SEQADV 7PE4 GLU A 321 UNP K5B7Z4 LINKER SEQADV 7PE4 HIS A 322 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PE4 HIS A 323 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PE4 HIS A 324 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PE4 HIS A 325 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PE4 HIS A 326 UNP K5B7Z4 EXPRESSION TAG SEQADV 7PE4 HIS A 327 UNP K5B7Z4 EXPRESSION TAG SEQRES 1 A 327 MET THR LEU VAL PRO ASP LEU THR ALA THR ASP LEU ALA SEQRES 2 A 327 ARG HIS ARG TRP LEU THR ASP ASN SER TRP THR ARG PRO SEQRES 3 A 327 THR TRP THR VAL ALA GLU LEU GLU ALA ALA LYS ALA GLY SEQRES 4 A 327 ARG THR ILE SER VAL VAL LEU PRO ALA LEU ASN GLU GLU SEQRES 5 A 327 GLU THR VAL GLY GLY VAL VAL GLU THR ILE ARG PRO LEU SEQRES 6 A 327 LEU GLY GLY LEU VAL ASP GLU LEU ILE VAL LEU ASP SER SEQRES 7 A 327 GLY SER THR ASP ASP THR GLU ILE ARG ALA MET ALA ALA SEQRES 8 A 327 GLY ALA ARG VAL ILE SER ARG GLU VAL ALA LEU PRO GLU SEQRES 9 A 327 VAL ALA PRO GLN PRO GLY LYS GLY GLU VAL LEU TRP ARG SEQRES 10 A 327 SER LEU ALA ALA THR THR GLY ASP ILE ILE VAL PHE ILE SEQRES 11 A 327 ASP SER ASP LEU ILE ASP PRO ASP PRO MET PHE VAL PRO SEQRES 12 A 327 LYS LEU VAL GLY PRO LEU LEU LEU SER GLU GLY VAL HIS SEQRES 13 A 327 LEU VAL LYS GLY PHE TYR ARG ARG PRO LEU LYS THR SER SEQRES 14 A 327 GLY SER GLU ASP ALA HIS GLY GLY GLY ARG VAL THR GLU SEQRES 15 A 327 LEU VAL ALA ARG PRO LEU LEU ALA ALA LEU ARG PRO GLU SEQRES 16 A 327 LEU THR CYS VAL LEU GLN PRO LEU GLY GLY GLU TYR ALA SEQRES 17 A 327 GLY THR ARG GLU LEU LEU MET SER VAL PRO PHE ALA PRO SEQRES 18 A 327 GLY TYR GLY VAL GLU ILE GLY LEU LEU VAL ASP THR TYR SEQRES 19 A 327 ASP ARG LEU GLY LEU ASP ALA ILE ALA GLN VAL ASN LEU SEQRES 20 A 327 GLY VAL ARG ALA HIS ARG ASN ARG PRO LEU THR ASP LEU SEQRES 21 A 327 ALA ALA MET SER ARG GLN VAL ILE ALA THR LEU PHE SER SEQRES 22 A 327 ARG CYS GLY VAL PRO ASP SER GLY VAL GLY LEU THR GLN SEQRES 23 A 327 PHE PHE ALA ASP GLY ASP GLY PHE SER PRO ARG THR SER SEQRES 24 A 327 GLU VAL SER LEU VAL ASP ARG PRO PRO MET ASN THR LEU SEQRES 25 A 327 ARG GLY LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 26 A 327 HIS HIS HET UPG A 401 36 HET MG A 402 1 HET CL A 403 1 HET BCT A 404 4 HET BCT A 405 4 HET CL A 406 1 HET BCT A 407 4 HET CL A 408 1 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM BCT BICARBONATE ION HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 2 UPG C15 H24 N2 O17 P2 FORMUL 3 MG MG 2+ FORMUL 4 CL 3(CL 1-) FORMUL 5 BCT 3(C H O3 1-) FORMUL 10 HOH *305(H2 O) HELIX 1 AA1 THR A 8 ARG A 14 1 7 HELIX 2 AA2 ARG A 16 ASN A 21 1 6 HELIX 3 AA3 THR A 29 ALA A 36 1 8 HELIX 4 AA4 THR A 54 ARG A 63 1 10 HELIX 5 AA5 PRO A 64 LEU A 66 5 3 HELIX 6 AA6 ASP A 83 ALA A 91 1 9 HELIX 7 AA7 ARG A 98 LEU A 102 1 5 HELIX 8 AA8 GLY A 110 THR A 122 1 13 HELIX 9 AA9 MET A 140 SER A 152 1 13 HELIX 10 AB1 GLY A 178 VAL A 184 1 7 HELIX 11 AB2 VAL A 184 ARG A 193 1 10 HELIX 12 AB3 PRO A 194 VAL A 199 5 6 HELIX 13 AB4 ARG A 211 MET A 215 1 5 HELIX 14 AB5 PRO A 221 TYR A 223 5 3 HELIX 15 AB6 GLY A 224 GLY A 238 1 15 HELIX 16 AB7 PRO A 256 CYS A 275 1 20 HELIX 17 AB8 PRO A 308 ARG A 313 5 6 SHEET 1 AA1 8 SER A 22 TRP A 23 0 SHEET 2 AA1 8 ILE A 242 VAL A 249 1 O ASN A 246 N TRP A 23 SHEET 3 AA1 8 LEU A 157 ARG A 163 1 N PHE A 161 O LEU A 247 SHEET 4 AA1 8 TYR A 207 THR A 210 -1 O ALA A 208 N VAL A 158 SHEET 5 AA1 8 ILE A 126 PHE A 129 -1 N PHE A 129 O TYR A 207 SHEET 6 AA1 8 ILE A 42 ALA A 48 1 N VAL A 45 O VAL A 128 SHEET 7 AA1 8 GLU A 72 ASP A 77 1 O ILE A 74 N VAL A 44 SHEET 8 AA1 8 ARG A 94 SER A 97 1 O ARG A 94 N VAL A 75 SHEET 1 AA2 2 THR A 285 ALA A 289 0 SHEET 2 AA2 2 PHE A 294 THR A 298 -1 O ARG A 297 N GLN A 286 LINK OD2 ASP A 133 MG MG A 402 1555 1555 2.30 LINK O2A UPG A 401 MG MG A 402 1555 1555 2.33 LINK O1B UPG A 401 MG MG A 402 1555 1555 2.26 LINK MG MG A 402 O HOH A 565 1555 1555 2.32 LINK MG MG A 402 O HOH A 662 1555 1555 2.24 CRYST1 101.887 101.887 122.098 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009815 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009815 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008190 0.00000