HEADER SIGNALING PROTEIN 09-AUG-21 7PED TITLE DEPTOR DEP DOMAIN TANDEM (DEPT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEP DOMAIN-CONTAINING MTOR-INTERACTING PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: DEP DOMAIN-CONTAINING PROTEIN 6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DEPTOR, DEPDC6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEP-DOMAIN, MTOR-BINDING, MTOR, MTORC1, MTORC2, DEPTOR, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WAELCHLI,R.JAKOB,T.MAIER REVDAT 3 31-JAN-24 7PED 1 REMARK REVDAT 2 29-SEP-21 7PED 1 JRNL REVDAT 1 08-SEP-21 7PED 0 JRNL AUTH M.WALCHLI,K.BERNEISER,F.MANGIA,S.IMSENG,L.M.CRAIGIE, JRNL AUTH 2 E.STUTTFELD,M.N.HALL,T.MAIER JRNL TITL REGULATION OF HUMAN MTOR COMPLEXES BY DEPTOR. JRNL REF ELIFE V. 10 2021 JRNL REFN ESSN 2050-084X JRNL PMID 34519268 JRNL DOI 10.7554/ELIFE.70871 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 46322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.9030 - 4.6507 0.98 3259 142 0.1762 0.1750 REMARK 3 2 4.6507 - 3.6916 0.99 3268 146 0.1731 0.1798 REMARK 3 3 3.6916 - 3.2250 0.97 3187 145 0.2126 0.2464 REMARK 3 4 3.2250 - 2.9302 0.99 3222 154 0.2426 0.2812 REMARK 3 5 2.9302 - 2.7202 0.99 3225 146 0.2472 0.2479 REMARK 3 6 2.7202 - 2.5598 0.98 3217 134 0.2349 0.2705 REMARK 3 7 2.5598 - 2.4316 0.96 3133 142 0.2442 0.2705 REMARK 3 8 2.4316 - 2.3258 0.98 3207 149 0.2393 0.2510 REMARK 3 9 2.3258 - 2.2362 0.98 3222 146 0.2393 0.2683 REMARK 3 10 2.2362 - 2.1591 0.98 3194 148 0.2567 0.2920 REMARK 3 11 2.1591 - 2.0915 0.98 3173 140 0.2683 0.2877 REMARK 3 12 2.0915 - 2.0318 0.98 3175 136 0.2940 0.2883 REMARK 3 13 2.0318 - 1.9783 0.93 3053 140 0.3352 0.3327 REMARK 3 14 1.9783 - 1.9300 0.85 2796 123 0.4144 0.3699 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9588 -2.7312 22.6349 REMARK 3 T TENSOR REMARK 3 T11: 0.5424 T22: 0.3524 REMARK 3 T33: 0.5210 T12: 0.0809 REMARK 3 T13: -0.0487 T23: -0.1446 REMARK 3 L TENSOR REMARK 3 L11: 1.4288 L22: 0.8434 REMARK 3 L33: 1.3027 L12: -0.0090 REMARK 3 L13: -0.0403 L23: -0.3375 REMARK 3 S TENSOR REMARK 3 S11: -0.2677 S12: -0.3757 S13: 0.3816 REMARK 3 S21: -0.0040 S22: 0.2459 S23: -0.0642 REMARK 3 S31: -0.7707 S32: -0.0733 S33: -0.0114 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 82 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5386 -7.3206 26.8698 REMARK 3 T TENSOR REMARK 3 T11: 0.5510 T22: 0.7641 REMARK 3 T33: 0.5631 T12: 0.1781 REMARK 3 T13: 0.0149 T23: -0.0994 REMARK 3 L TENSOR REMARK 3 L11: 0.0692 L22: 0.5229 REMARK 3 L33: 0.3416 L12: 0.1893 REMARK 3 L13: -0.1548 L23: -0.4245 REMARK 3 S TENSOR REMARK 3 S11: -0.3684 S12: -0.8361 S13: -0.1815 REMARK 3 S21: 0.0928 S22: 0.4145 S23: 0.3640 REMARK 3 S31: -0.4211 S32: -0.7256 S33: 0.0057 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9675 -21.1031 23.6645 REMARK 3 T TENSOR REMARK 3 T11: 0.4640 T22: 0.4935 REMARK 3 T33: 0.4719 T12: 0.0480 REMARK 3 T13: 0.0068 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 0.8540 L22: 0.4704 REMARK 3 L33: 0.0568 L12: -0.2906 REMARK 3 L13: 0.2322 L23: -0.1224 REMARK 3 S TENSOR REMARK 3 S11: -0.1317 S12: -0.2568 S13: 0.2273 REMARK 3 S21: 0.2538 S22: 0.1477 S23: -0.0530 REMARK 3 S31: -0.0996 S32: 0.1378 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 128 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1819 -2.4314 -6.7174 REMARK 3 T TENSOR REMARK 3 T11: 0.5277 T22: 0.4331 REMARK 3 T33: 0.5550 T12: -0.1116 REMARK 3 T13: -0.0549 T23: 0.1004 REMARK 3 L TENSOR REMARK 3 L11: 1.9695 L22: 0.7645 REMARK 3 L33: 3.4493 L12: -0.8401 REMARK 3 L13: 0.7939 L23: -1.1671 REMARK 3 S TENSOR REMARK 3 S11: -0.2794 S12: 0.3119 S13: 0.2715 REMARK 3 S21: 0.0401 S22: -0.2035 S23: -0.1975 REMARK 3 S31: -0.7144 S32: 0.3788 S33: -0.0069 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.6456 -26.6953 10.4262 REMARK 3 T TENSOR REMARK 3 T11: 0.3849 T22: 0.3796 REMARK 3 T33: 0.4301 T12: -0.0010 REMARK 3 T13: 0.0234 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.1627 L22: 0.2549 REMARK 3 L33: 0.2419 L12: 0.2299 REMARK 3 L13: -0.2006 L23: -0.2773 REMARK 3 S TENSOR REMARK 3 S11: -0.2377 S12: 0.2292 S13: -0.1057 REMARK 3 S21: -0.0294 S22: 0.1443 S23: -0.2870 REMARK 3 S31: 0.2287 S32: -0.2346 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.6975 -34.8500 25.9078 REMARK 3 T TENSOR REMARK 3 T11: 0.5378 T22: 0.5487 REMARK 3 T33: 0.4811 T12: -0.0166 REMARK 3 T13: 0.0335 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.4711 L22: 1.3183 REMARK 3 L33: 0.8990 L12: 0.1618 REMARK 3 L13: 0.3308 L23: 0.2249 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: 0.0357 S13: -0.1616 REMARK 3 S21: 0.2563 S22: 0.0372 S23: 0.0988 REMARK 3 S31: 0.8084 S32: -0.3511 S33: -0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.0113 -17.6843 24.7594 REMARK 3 T TENSOR REMARK 3 T11: 0.4653 T22: 0.5490 REMARK 3 T33: 0.4601 T12: 0.0230 REMARK 3 T13: -0.0037 T23: -0.1009 REMARK 3 L TENSOR REMARK 3 L11: 0.8772 L22: 1.2355 REMARK 3 L33: 0.4931 L12: -1.0881 REMARK 3 L13: 0.3311 L23: -0.2064 REMARK 3 S TENSOR REMARK 3 S11: -0.1854 S12: -0.4459 S13: 0.2183 REMARK 3 S21: 0.2702 S22: 0.1286 S23: -0.0944 REMARK 3 S31: -0.0312 S32: -0.0899 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.0927 -29.3766 -9.2681 REMARK 3 T TENSOR REMARK 3 T11: 0.5793 T22: 0.5467 REMARK 3 T33: 0.4143 T12: -0.0153 REMARK 3 T13: 0.0314 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 1.8006 L22: 1.0978 REMARK 3 L33: 0.6686 L12: -0.6109 REMARK 3 L13: -0.1198 L23: -0.1144 REMARK 3 S TENSOR REMARK 3 S11: 0.0767 S12: 0.4879 S13: -0.1334 REMARK 3 S21: -0.3148 S22: -0.1348 S23: 0.0328 REMARK 3 S31: 0.3565 S32: -0.4494 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.9066 -22.4657 -12.8708 REMARK 3 T TENSOR REMARK 3 T11: 0.5370 T22: 0.7207 REMARK 3 T33: 0.4155 T12: 0.1115 REMARK 3 T13: -0.0435 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.1091 L22: 1.5066 REMARK 3 L33: 0.9264 L12: -1.0064 REMARK 3 L13: -0.5166 L23: -0.1350 REMARK 3 S TENSOR REMARK 3 S11: 0.3555 S12: 0.5595 S13: 0.0909 REMARK 3 S21: -0.5599 S22: -0.2449 S23: 0.0971 REMARK 3 S31: -0.3527 S32: -0.5635 S33: 0.0035 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 215 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.8282 -28.8301 3.8912 REMARK 3 T TENSOR REMARK 3 T11: 0.4973 T22: 0.4327 REMARK 3 T33: 0.4795 T12: 0.0534 REMARK 3 T13: 0.0624 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.3233 L22: 0.2419 REMARK 3 L33: 0.3880 L12: -0.2001 REMARK 3 L13: -0.2318 L23: 0.3081 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: 0.1869 S13: -0.0740 REMARK 3 S21: -0.1833 S22: -0.1095 S23: -0.2043 REMARK 3 S31: 0.5553 S32: 0.2253 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2190 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292116295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46594 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 99.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.13200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4F7Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350,NATRIUM HYDROCHLORID, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.50700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 GLY B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 THR B 7 REMARK 465 GLY B 8 REMARK 465 SER B 9 REMARK 465 ALA B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 ASP B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 THR B 16 REMARK 465 SER B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 THR A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG B 223 OE2 GLU B 229 1.53 REMARK 500 OD1 ASP B 71 HH12 ARG B 82 1.60 REMARK 500 N GLY B 20 O HOH B 301 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 57 18.36 55.86 REMARK 500 SER B 203 -56.91 -130.79 REMARK 500 LYS B 205 8.10 55.03 REMARK 500 HIS B 206 150.99 -48.97 REMARK 500 ASP B 210 95.30 -65.42 REMARK 500 SER B 211 -163.51 -162.64 REMARK 500 ASP A 210 94.29 -66.12 REMARK 500 SER A 211 -161.05 -164.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 7PED B 1 230 UNP Q8TB45 DPTOR_HUMAN 1 230 DBREF 7PED A 1 230 UNP Q8TB45 DPTOR_HUMAN 1 230 SEQADV 7PED SER B 204 UNP Q8TB45 ASN 204 VARIANT SEQADV 7PED SER A 204 UNP Q8TB45 ASN 204 VARIANT SEQRES 1 B 230 MET GLU GLU GLY GLY SER THR GLY SER ALA GLY SER ASP SEQRES 2 B 230 SER SER THR SER GLY SER GLY GLY ALA GLN GLN ARG GLU SEQRES 3 B 230 LEU GLU ARG MET ALA GLU VAL LEU VAL THR GLY GLU GLN SEQRES 4 B 230 LEU ARG LEU ARG LEU HIS GLU GLU LYS VAL ILE LYS ASP SEQRES 5 B 230 ARG ARG HIS HIS LEU LYS THR TYR PRO ASN CYS PHE VAL SEQRES 6 B 230 ALA LYS GLU LEU ILE ASP TRP LEU ILE GLU HIS LYS GLU SEQRES 7 B 230 ALA SER ASP ARG GLU THR ALA ILE LYS LEU MET GLN LYS SEQRES 8 B 230 LEU ALA ASP ARG GLY ILE ILE HIS HIS VAL CYS ASP GLU SEQRES 9 B 230 HIS LYS GLU PHE LYS ASP VAL LYS LEU PHE TYR ARG PHE SEQRES 10 B 230 ARG LYS ASP ASP GLY THR PHE PRO LEU ASP ASN GLU VAL SEQRES 11 B 230 LYS ALA PHE MET ARG GLY GLN ARG LEU TYR GLU LYS LEU SEQRES 12 B 230 MET SER PRO GLU ASN THR LEU LEU GLN PRO ARG GLU GLU SEQRES 13 B 230 GLU GLY VAL LYS TYR GLU ARG THR PHE MET ALA SER GLU SEQRES 14 B 230 PHE LEU ASP TRP LEU VAL GLN GLU GLY GLU ALA THR THR SEQRES 15 B 230 ARG LYS GLU ALA GLU GLN LEU CYS HIS ARG LEU MET GLU SEQRES 16 B 230 HIS GLY ILE ILE GLN HIS VAL SER SER LYS HIS PRO PHE SEQRES 17 B 230 VAL ASP SER ASN LEU LEU TYR GLN PHE ARG MET ASN PHE SEQRES 18 B 230 ARG ARG ARG ARG ARG LEU MET GLU LEU SEQRES 1 A 230 MET GLU GLU GLY GLY SER THR GLY SER ALA GLY SER ASP SEQRES 2 A 230 SER SER THR SER GLY SER GLY GLY ALA GLN GLN ARG GLU SEQRES 3 A 230 LEU GLU ARG MET ALA GLU VAL LEU VAL THR GLY GLU GLN SEQRES 4 A 230 LEU ARG LEU ARG LEU HIS GLU GLU LYS VAL ILE LYS ASP SEQRES 5 A 230 ARG ARG HIS HIS LEU LYS THR TYR PRO ASN CYS PHE VAL SEQRES 6 A 230 ALA LYS GLU LEU ILE ASP TRP LEU ILE GLU HIS LYS GLU SEQRES 7 A 230 ALA SER ASP ARG GLU THR ALA ILE LYS LEU MET GLN LYS SEQRES 8 A 230 LEU ALA ASP ARG GLY ILE ILE HIS HIS VAL CYS ASP GLU SEQRES 9 A 230 HIS LYS GLU PHE LYS ASP VAL LYS LEU PHE TYR ARG PHE SEQRES 10 A 230 ARG LYS ASP ASP GLY THR PHE PRO LEU ASP ASN GLU VAL SEQRES 11 A 230 LYS ALA PHE MET ARG GLY GLN ARG LEU TYR GLU LYS LEU SEQRES 12 A 230 MET SER PRO GLU ASN THR LEU LEU GLN PRO ARG GLU GLU SEQRES 13 A 230 GLU GLY VAL LYS TYR GLU ARG THR PHE MET ALA SER GLU SEQRES 14 A 230 PHE LEU ASP TRP LEU VAL GLN GLU GLY GLU ALA THR THR SEQRES 15 A 230 ARG LYS GLU ALA GLU GLN LEU CYS HIS ARG LEU MET GLU SEQRES 16 A 230 HIS GLY ILE ILE GLN HIS VAL SER SER LYS HIS PRO PHE SEQRES 17 A 230 VAL ASP SER ASN LEU LEU TYR GLN PHE ARG MET ASN PHE SEQRES 18 A 230 ARG ARG ARG ARG ARG LEU MET GLU LEU FORMUL 3 HOH *204(H2 O) HELIX 1 AA1 GLY B 20 GLU B 47 1 28 HELIX 2 AA2 ALA B 66 HIS B 76 1 11 HELIX 3 AA3 ASP B 81 ARG B 95 1 15 HELIX 4 AA4 LYS B 119 ASP B 121 5 3 HELIX 5 AA5 ASP B 127 MET B 144 1 18 HELIX 6 AA6 ALA B 167 GLU B 177 1 11 HELIX 7 AA7 THR B 182 HIS B 196 1 15 HELIX 8 AA8 ARG B 226 LEU B 230 5 5 HELIX 9 AA9 GLY A 21 GLU A 47 1 27 HELIX 10 AB1 ALA A 66 HIS A 76 1 11 HELIX 11 AB2 ASP A 81 ARG A 95 1 15 HELIX 12 AB3 LYS A 119 ASP A 121 5 3 HELIX 13 AB4 ASP A 127 MET A 144 1 18 HELIX 14 AB5 ALA A 167 GLU A 177 1 11 HELIX 15 AB6 THR A 182 HIS A 196 1 15 HELIX 16 AB7 ARG A 226 LEU A 230 5 5 SHEET 1 AA1 4 LYS B 51 HIS B 55 0 SHEET 2 AA1 4 LYS B 58 VAL B 65 -1 O TYR B 60 N ARG B 53 SHEET 3 AA1 4 PHE A 114 PHE A 117 -1 O TYR A 115 N PHE B 64 SHEET 4 AA1 4 ILE B 98 HIS B 100 -1 N HIS B 99 O ARG A 116 SHEET 1 AA2 4 LYS A 51 HIS A 55 0 SHEET 2 AA2 4 LYS A 58 VAL A 65 -1 O TYR A 60 N ARG A 53 SHEET 3 AA2 4 PHE B 114 PHE B 117 -1 N TYR B 115 O PHE A 64 SHEET 4 AA2 4 ILE A 98 HIS A 100 -1 O HIS A 99 N ARG B 116 SHEET 1 AA3 4 GLN B 152 GLU B 156 0 SHEET 2 AA3 4 VAL B 159 MET B 166 -1 O TYR B 161 N ARG B 154 SHEET 3 AA3 4 LEU B 214 PHE B 217 -1 O TYR B 215 N PHE B 165 SHEET 4 AA3 4 ILE B 199 HIS B 201 -1 N GLN B 200 O GLN B 216 SHEET 1 AA4 4 GLN A 152 GLU A 156 0 SHEET 2 AA4 4 VAL A 159 MET A 166 -1 O TYR A 161 N ARG A 154 SHEET 3 AA4 4 LEU A 214 PHE A 217 -1 O TYR A 215 N PHE A 165 SHEET 4 AA4 4 ILE A 199 HIS A 201 -1 N GLN A 200 O GLN A 216 SSBOND 1 CYS B 102 CYS A 102 1555 1555 2.03 CRYST1 50.862 99.014 68.245 90.00 109.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019661 0.000000 0.007031 0.00000 SCALE2 0.000000 0.010100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015562 0.00000