HEADER CHAPERONE 10-AUG-21 7PEF TITLE CRYSTAL STRUCTURE OF IPGC IN COMPLEX WITH DMSO COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN IPGC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: IPGC, IPPI, CP0129; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS IPGC, CHAPERONE, SHIGELLA, DMSO EXPDTA X-RAY DIFFRACTION AUTHOR M.GARDONYI,A.HEINE,G.KLEBE REVDAT 2 31-JAN-24 7PEF 1 REMARK REVDAT 1 24-AUG-22 7PEF 0 JRNL AUTH M.GARDONYI,A.HEINE,G.KLEBE JRNL TITL CRYSTAL STRUCTURE OF IPGC IN COMPLEX WITH DMSO JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2261 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3133 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2168 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 19.87000 REMARK 3 B22 (A**2) : 19.87000 REMARK 3 B33 (A**2) : -39.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.014 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.014 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.423 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2252 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2117 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3053 ; 1.168 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4798 ; 0.893 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 4.642 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;33.663 ;25.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 370 ;11.316 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;12.432 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 331 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2610 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 540 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 24 149 B 24 149 8492 0.110 0.050 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.548 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.452 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7672 -40.2541 24.8281 REMARK 3 T TENSOR REMARK 3 T11: 0.1567 T22: 0.1379 REMARK 3 T33: 0.3090 T12: 0.0378 REMARK 3 T13: -0.0027 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 8.9677 L22: 1.9997 REMARK 3 L33: 3.3888 L12: 0.0605 REMARK 3 L13: 0.8676 L23: 0.1329 REMARK 3 S TENSOR REMARK 3 S11: -0.1197 S12: -0.0900 S13: 0.1125 REMARK 3 S21: -0.0622 S22: 0.0334 S23: -0.2813 REMARK 3 S31: 0.0557 S32: 0.1493 S33: 0.0863 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3313 -41.2560 21.0748 REMARK 3 T TENSOR REMARK 3 T11: 0.2005 T22: 0.1429 REMARK 3 T33: 0.2916 T12: -0.0040 REMARK 3 T13: 0.0343 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 6.3659 L22: 4.5764 REMARK 3 L33: 2.0598 L12: -2.3632 REMARK 3 L13: 2.3482 L23: 1.2258 REMARK 3 S TENSOR REMARK 3 S11: 0.0899 S12: -0.2478 S13: -0.3571 REMARK 3 S21: 0.1278 S22: 0.0099 S23: 0.1517 REMARK 3 S31: 0.1496 S32: -0.1361 S33: -0.0998 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9891 -29.3556 19.0284 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: 0.1623 REMARK 3 T33: 0.2504 T12: -0.0152 REMARK 3 T13: 0.0076 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 3.8715 L22: 5.4885 REMARK 3 L33: 1.7154 L12: -2.1438 REMARK 3 L13: -0.5210 L23: 2.3490 REMARK 3 S TENSOR REMARK 3 S11: 0.1248 S12: 0.1866 S13: -0.0918 REMARK 3 S21: 0.0735 S22: -0.1306 S23: 0.1432 REMARK 3 S31: 0.0895 S32: -0.2531 S33: 0.0058 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5276 -29.5549 19.8673 REMARK 3 T TENSOR REMARK 3 T11: 0.0011 T22: 0.0726 REMARK 3 T33: 0.2632 T12: 0.0035 REMARK 3 T13: 0.0067 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.6829 L22: 0.5644 REMARK 3 L33: 3.0606 L12: 0.7665 REMARK 3 L13: -0.4216 L23: -0.9897 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: 0.0073 S13: -0.0092 REMARK 3 S21: -0.0157 S22: -0.0074 S23: -0.0065 REMARK 3 S31: 0.0518 S32: 0.0397 S33: 0.0118 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9265 -17.8482 17.5216 REMARK 3 T TENSOR REMARK 3 T11: 0.0636 T22: 0.1386 REMARK 3 T33: 0.2624 T12: 0.0290 REMARK 3 T13: 0.0150 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 3.9815 L22: 1.9682 REMARK 3 L33: 6.9538 L12: 0.5599 REMARK 3 L13: 1.3293 L23: -2.0407 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.1166 S13: 0.0672 REMARK 3 S21: 0.1628 S22: 0.1284 S23: 0.1545 REMARK 3 S31: -0.0756 S32: -0.3948 S33: -0.1127 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2296 -14.2947 15.0323 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: 0.1465 REMARK 3 T33: 0.2678 T12: 0.0033 REMARK 3 T13: -0.0027 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.2411 L22: 12.1996 REMARK 3 L33: 2.5896 L12: -3.8906 REMARK 3 L13: 1.7914 L23: -5.6148 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: -0.0053 S13: 0.0360 REMARK 3 S21: 0.1255 S22: 0.0168 S23: -0.0985 REMARK 3 S31: -0.0851 S32: -0.0072 S33: 0.0303 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5295 -18.8261 7.2170 REMARK 3 T TENSOR REMARK 3 T11: 0.0049 T22: 0.0759 REMARK 3 T33: 0.2733 T12: -0.0087 REMARK 3 T13: -0.0055 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.5312 L22: 1.5529 REMARK 3 L33: 2.4616 L12: -0.4311 REMARK 3 L13: 0.2966 L23: -0.7052 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: -0.0332 S13: 0.0913 REMARK 3 S21: 0.0614 S22: 0.0587 S23: -0.0129 REMARK 3 S31: -0.0401 S32: -0.0631 S33: -0.0135 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1939 -16.8923 -1.7951 REMARK 3 T TENSOR REMARK 3 T11: 0.0580 T22: 0.1281 REMARK 3 T33: 0.2789 T12: -0.0282 REMARK 3 T13: -0.0091 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.9977 L22: 5.1876 REMARK 3 L33: 4.6069 L12: -1.8046 REMARK 3 L13: -1.2108 L23: 2.4999 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: 0.1553 S13: 0.1708 REMARK 3 S21: -0.4242 S22: -0.0084 S23: -0.1777 REMARK 3 S31: -0.3618 S32: 0.0833 S33: -0.0976 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0945 -18.8603 -4.1886 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.1521 REMARK 3 T33: 0.2558 T12: 0.0099 REMARK 3 T13: -0.0252 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.5336 L22: 8.3609 REMARK 3 L33: 1.3669 L12: -0.9934 REMARK 3 L13: -0.3870 L23: 1.3779 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: 0.0965 S13: 0.0786 REMARK 3 S21: -0.1190 S22: 0.0098 S23: 0.0657 REMARK 3 S31: 0.0099 S32: -0.1119 S33: -0.0175 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 21 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1103 -23.9712 22.1371 REMARK 3 T TENSOR REMARK 3 T11: 0.0417 T22: 0.2155 REMARK 3 T33: 0.2667 T12: 0.0263 REMARK 3 T13: -0.0121 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 6.4540 L22: 1.1658 REMARK 3 L33: 3.6510 L12: 2.0380 REMARK 3 L13: -0.2424 L23: -1.4494 REMARK 3 S TENSOR REMARK 3 S11: 0.1468 S12: -0.3484 S13: 0.0230 REMARK 3 S21: 0.0965 S22: -0.0899 S23: 0.0352 REMARK 3 S31: -0.1268 S32: 0.0512 S33: -0.0568 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2068 -9.4612 24.8817 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.2152 REMARK 3 T33: 0.3836 T12: 0.0715 REMARK 3 T13: -0.0129 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 5.8155 L22: 1.3746 REMARK 3 L33: 4.8869 L12: 2.1187 REMARK 3 L13: -4.5070 L23: -1.2731 REMARK 3 S TENSOR REMARK 3 S11: -0.0663 S12: 0.3749 S13: 0.3024 REMARK 3 S21: -0.1066 S22: 0.0901 S23: 0.3774 REMARK 3 S31: -0.0628 S32: -0.2484 S33: -0.0238 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 51 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6789 -14.7020 17.3992 REMARK 3 T TENSOR REMARK 3 T11: 0.1045 T22: 0.1229 REMARK 3 T33: 0.2623 T12: -0.0273 REMARK 3 T13: 0.0078 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 4.4873 L22: 3.9563 REMARK 3 L33: 2.7158 L12: -2.7248 REMARK 3 L13: 0.5212 L23: -0.3192 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.0167 S13: 0.2253 REMARK 3 S21: -0.0701 S22: 0.0219 S23: -0.2044 REMARK 3 S31: -0.1275 S32: 0.2080 S33: -0.0454 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 52 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8305 -19.8496 19.9703 REMARK 3 T TENSOR REMARK 3 T11: 0.0721 T22: 0.0933 REMARK 3 T33: 0.2341 T12: -0.0193 REMARK 3 T13: -0.0088 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 4.6730 L22: 0.8224 REMARK 3 L33: 2.9397 L12: -0.0306 REMARK 3 L13: 1.1488 L23: -0.3720 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: -0.0677 S13: -0.1169 REMARK 3 S21: -0.0045 S22: -0.0028 S23: 0.0187 REMARK 3 S31: -0.0124 S32: 0.0335 S33: -0.0397 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 69 B 98 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0217 -25.5205 10.6940 REMARK 3 T TENSOR REMARK 3 T11: 0.0116 T22: 0.0791 REMARK 3 T33: 0.2664 T12: -0.0018 REMARK 3 T13: 0.0014 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.3363 L22: 2.0954 REMARK 3 L33: 3.0269 L12: 0.4854 REMARK 3 L13: 0.2014 L23: 1.4092 REMARK 3 S TENSOR REMARK 3 S11: -0.0481 S12: -0.0418 S13: -0.0277 REMARK 3 S21: 0.1081 S22: 0.0515 S23: -0.1253 REMARK 3 S31: -0.0040 S32: 0.2178 S33: -0.0035 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 99 B 103 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9450 -16.4799 3.0366 REMARK 3 T TENSOR REMARK 3 T11: 0.3197 T22: 0.2300 REMARK 3 T33: 0.2982 T12: 0.1593 REMARK 3 T13: 0.0113 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 3.4595 L22: 8.7823 REMARK 3 L33: 10.9662 L12: -1.7510 REMARK 3 L13: 5.9501 L23: -0.6727 REMARK 3 S TENSOR REMARK 3 S11: -0.2414 S12: -0.1999 S13: 0.0910 REMARK 3 S21: 0.4180 S22: -0.0238 S23: 0.3546 REMARK 3 S31: -0.4349 S32: -0.4706 S33: 0.2653 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 104 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9485 -32.3100 0.4605 REMARK 3 T TENSOR REMARK 3 T11: 0.0797 T22: 0.1062 REMARK 3 T33: 0.2575 T12: -0.0156 REMARK 3 T13: 0.0189 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.0200 L22: 4.6732 REMARK 3 L33: 2.2456 L12: -0.4351 REMARK 3 L13: 0.6055 L23: -0.1911 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: 0.0807 S13: -0.1632 REMARK 3 S21: -0.0254 S22: -0.0080 S23: -0.0258 REMARK 3 S31: 0.3156 S32: 0.1347 S33: -0.0280 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 125 B 134 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2766 -26.5817 -7.2146 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.1207 REMARK 3 T33: 0.2571 T12: -0.0100 REMARK 3 T13: -0.0038 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 3.6264 L22: 4.0223 REMARK 3 L33: 4.4903 L12: -1.2007 REMARK 3 L13: 1.0753 L23: -1.5828 REMARK 3 S TENSOR REMARK 3 S11: 0.1165 S12: 0.1686 S13: -0.0511 REMARK 3 S21: -0.3134 S22: -0.0478 S23: 0.2912 REMARK 3 S31: 0.2673 S32: -0.2059 S33: -0.0687 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 135 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5043 -27.0402 -8.8505 REMARK 3 T TENSOR REMARK 3 T11: 0.0757 T22: 0.1350 REMARK 3 T33: 0.2571 T12: 0.0102 REMARK 3 T13: 0.0208 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.0173 L22: 5.7309 REMARK 3 L33: 3.9981 L12: -0.5444 REMARK 3 L13: 0.6788 L23: -0.2642 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.0928 S13: -0.1494 REMARK 3 S21: 0.0001 S22: -0.0148 S23: -0.0727 REMARK 3 S31: 0.2047 S32: 0.1966 S33: 0.0298 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8266 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.02 REMARK 200 DATA SCALING SOFTWARE : XDS 1.02 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46180 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.89000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 7.0.047 REMARK 200 STARTING MODEL: 6SCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG 4000, 0.1 M TRIS PH 8, 0.3 M REMARK 280 MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.34333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.17167 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.17167 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.34333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 ILE A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 ILE A 16 REMARK 465 ASP A 17 REMARK 465 ALA A 18 REMARK 465 ILE A 19 REMARK 465 ASN A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 ALA A 23 REMARK 465 GLN B 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 29 CG OD1 ND2 REMARK 470 LYS A 49 CE NZ REMARK 470 GLN A 88 CD OE1 NE2 REMARK 470 LYS A 124 NZ REMARK 470 LYS A 138 NZ REMARK 470 SER B 21 OG REMARK 470 ILE B 31 CG1 CG2 CD1 REMARK 470 MET B 35 CG SD CE REMARK 470 LYS B 49 CE NZ REMARK 470 LYS B 118 CE NZ REMARK 470 LYS B 122 NZ REMARK 470 LYS B 124 NZ REMARK 470 LYS B 138 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 101 -57.53 73.75 REMARK 500 TYR B 68 47.72 -94.53 REMARK 500 LYS B 101 -4.47 -58.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 370 O REMARK 620 2 HOH B 318 O 170.2 REMARK 620 3 HOH B 323 O 90.1 84.5 REMARK 620 4 HOH B 345 O 88.3 83.4 88.6 REMARK 620 5 HOH B 362 O 96.8 87.4 169.0 83.2 REMARK 620 6 HOH B 363 O 98.6 90.1 94.7 172.4 92.6 REMARK 620 N 1 2 3 4 5 DBREF 7PEF A 10 151 UNP P0A2U4 IPGC_SHIFL 10 151 DBREF 7PEF B 10 151 UNP P0A2U4 IPGC_SHIFL 10 151 SEQADV 7PEF GLY A 9 UNP P0A2U4 EXPRESSION TAG SEQADV 7PEF GLY B 9 UNP P0A2U4 EXPRESSION TAG SEQRES 1 A 143 GLY SER ILE SER THR ALA VAL ILE ASP ALA ILE ASN SER SEQRES 2 A 143 GLY ALA THR LEU LYS ASP ILE ASN ALA ILE PRO ASP ASP SEQRES 3 A 143 MET MET ASP ASP ILE TYR SER TYR ALA TYR ASP PHE TYR SEQRES 4 A 143 ASN LYS GLY ARG ILE GLU GLU ALA GLU VAL PHE PHE ARG SEQRES 5 A 143 PHE LEU CYS ILE TYR ASP PHE TYR ASN VAL ASP TYR ILE SEQRES 6 A 143 MET GLY LEU ALA ALA ILE TYR GLN ILE LYS GLU GLN PHE SEQRES 7 A 143 GLN GLN ALA ALA ASP LEU TYR ALA VAL ALA PHE ALA LEU SEQRES 8 A 143 GLY LYS ASN ASP TYR THR PRO VAL PHE HIS THR GLY GLN SEQRES 9 A 143 CYS GLN LEU ARG LEU LYS ALA PRO LEU LYS ALA LYS GLU SEQRES 10 A 143 CYS PHE GLU LEU VAL ILE GLN HIS SER ASN ASP GLU LYS SEQRES 11 A 143 LEU LYS ILE LYS ALA GLN SER TYR LEU ASP ALA ILE GLN SEQRES 1 B 143 GLY SER ILE SER THR ALA VAL ILE ASP ALA ILE ASN SER SEQRES 2 B 143 GLY ALA THR LEU LYS ASP ILE ASN ALA ILE PRO ASP ASP SEQRES 3 B 143 MET MET ASP ASP ILE TYR SER TYR ALA TYR ASP PHE TYR SEQRES 4 B 143 ASN LYS GLY ARG ILE GLU GLU ALA GLU VAL PHE PHE ARG SEQRES 5 B 143 PHE LEU CYS ILE TYR ASP PHE TYR ASN VAL ASP TYR ILE SEQRES 6 B 143 MET GLY LEU ALA ALA ILE TYR GLN ILE LYS GLU GLN PHE SEQRES 7 B 143 GLN GLN ALA ALA ASP LEU TYR ALA VAL ALA PHE ALA LEU SEQRES 8 B 143 GLY LYS ASN ASP TYR THR PRO VAL PHE HIS THR GLY GLN SEQRES 9 B 143 CYS GLN LEU ARG LEU LYS ALA PRO LEU LYS ALA LYS GLU SEQRES 10 B 143 CYS PHE GLU LEU VAL ILE GLN HIS SER ASN ASP GLU LYS SEQRES 11 B 143 LEU LYS ILE LYS ALA GLN SER TYR LEU ASP ALA ILE GLN HET CL A 201 1 HET DMS A 202 8 HET MG B 201 1 HET CL B 202 1 HETNAM CL CHLORIDE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM MG MAGNESIUM ION FORMUL 3 CL 2(CL 1-) FORMUL 4 DMS C2 H6 O S FORMUL 5 MG MG 2+ FORMUL 7 HOH *170(H2 O) HELIX 1 AA1 PRO A 32 LYS A 49 1 18 HELIX 2 AA2 ARG A 51 ASP A 66 1 16 HELIX 3 AA3 ASN A 69 LYS A 83 1 15 HELIX 4 AA4 GLN A 85 LYS A 101 1 17 HELIX 5 AA5 TYR A 104 LEU A 117 1 14 HELIX 6 AA6 ALA A 119 SER A 134 1 16 HELIX 7 AA7 ASP A 136 ILE A 150 1 15 HELIX 8 AA8 SER B 10 SER B 21 1 12 HELIX 9 AA9 PRO B 32 LYS B 49 1 18 HELIX 10 AB1 ARG B 51 ASP B 66 1 16 HELIX 11 AB2 ASN B 69 LYS B 83 1 15 HELIX 12 AB3 GLN B 85 GLY B 100 1 16 HELIX 13 AB4 TYR B 104 LEU B 117 1 14 HELIX 14 AB5 ALA B 119 SER B 134 1 16 HELIX 15 AB6 ASP B 136 ILE B 150 1 15 LINK O HOH A 370 MG MG B 201 4655 1555 2.11 LINK MG MG B 201 O HOH B 318 1555 1555 2.18 LINK MG MG B 201 O HOH B 323 1555 1555 2.10 LINK MG MG B 201 O HOH B 345 1555 1555 2.31 LINK MG MG B 201 O HOH B 362 1555 1555 2.15 LINK MG MG B 201 O HOH B 363 1555 1555 1.90 CRYST1 57.477 57.477 159.515 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017398 0.010045 0.000000 0.00000 SCALE2 0.000000 0.020090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006269 0.00000