HEADER BLOOD CLOTTING 18-AUG-21 7PHX TITLE TSETSE THROMBIN INHIBITOR IN COMPLEX WITH HUMAN ALPHA-THROMBIN - ACID- TITLE 2 STABLE SULFOTYROSINE ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: THROMBIN HEAVY CHAIN; COMPND 6 CHAIN: H; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: TSETSE THROMBIN INHIBITOR; COMPND 9 CHAIN: I; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: GLOSSINA MORSITANS MORSITANS; SOURCE 12 ORGANISM_COMMON: SAVANNAH TSETSE FLY; SOURCE 13 ORGANISM_TAXID: 37546 KEYWDS ANTICOAGULANT; EXOSITE II BINDING; SULFOTYROSINE SULFONATE ANALOGUE, KEYWDS 2 BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR P.J.B.PEREIRA,J.RIPOLL-ROZADA,B.M.CALISTO REVDAT 4 31-JAN-24 7PHX 1 REMARK REVDAT 3 27-OCT-21 7PHX 1 JRNL REVDAT 2 13-OCT-21 7PHX 1 JRNL REVDAT 1 06-OCT-21 7PHX 0 JRNL AUTH L.J.DOWMAN,S.M.AGTEN,J.RIPOLL-ROZADA,B.M.CALISTO, JRNL AUTH 2 P.J.B.PEREIRA,R.J.PAYNE JRNL TITL SYNTHESIS AND EVALUATION OF PEPTIDIC THROMBIN INHIBITORS JRNL TITL 2 BEARING ACID-STABLE SULFOTYROSINE ANALOGUES. JRNL REF CHEM.COMMUN.(CAMB.) V. 57 10923 2021 JRNL REFN ESSN 1364-548X JRNL PMID 34596182 JRNL DOI 10.1039/D1CC04742F REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 27468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9500 - 3.8800 0.90 2614 161 0.1563 0.1851 REMARK 3 2 3.8800 - 3.0800 0.93 2614 127 0.1561 0.2128 REMARK 3 3 3.0800 - 2.6900 0.96 2639 147 0.1852 0.2089 REMARK 3 4 2.6900 - 2.4400 0.97 2644 141 0.1938 0.2169 REMARK 3 5 2.4400 - 2.2700 0.93 2564 115 0.1911 0.2358 REMARK 3 6 2.2700 - 2.1300 0.97 2628 139 0.2090 0.3051 REMARK 3 7 2.1300 - 2.0300 0.97 2641 134 0.2193 0.2741 REMARK 3 8 2.0300 - 1.9400 0.95 2581 126 0.2423 0.2993 REMARK 3 9 1.9400 - 1.8600 0.96 2605 121 0.2877 0.3418 REMARK 3 10 1.8600 - 1.8000 0.97 2602 125 0.3647 0.4272 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.229 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.465 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2517 REMARK 3 ANGLE : 1.005 3406 REMARK 3 CHIRALITY : 0.063 358 REMARK 3 PLANARITY : 0.008 441 REMARK 3 DIHEDRAL : 15.391 960 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 291 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5536 8.8314 28.3306 REMARK 3 T TENSOR REMARK 3 T11: 0.7262 T22: 0.3485 REMARK 3 T33: 0.2848 T12: 0.0223 REMARK 3 T13: 0.1349 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 6.7154 L22: 4.9960 REMARK 3 L33: 2.0715 L12: 0.2708 REMARK 3 L13: 0.3385 L23: -1.5641 REMARK 3 S TENSOR REMARK 3 S11: 0.7496 S12: -0.7209 S13: 0.1252 REMARK 3 S21: 0.9046 S22: -0.0923 S23: 0.3856 REMARK 3 S31: -0.5072 S32: -0.2209 S33: -0.5857 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 300 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1097 12.2941 30.6476 REMARK 3 T TENSOR REMARK 3 T11: 1.4325 T22: 0.3694 REMARK 3 T33: 0.0157 T12: -0.0741 REMARK 3 T13: 0.1447 T23: -0.1570 REMARK 3 L TENSOR REMARK 3 L11: 2.2615 L22: 0.7794 REMARK 3 L33: 2.6902 L12: -0.3620 REMARK 3 L13: -0.5709 L23: 1.4349 REMARK 3 S TENSOR REMARK 3 S11: 0.2030 S12: -0.5278 S13: 0.2952 REMARK 3 S21: 0.3410 S22: 0.3171 S23: -0.2239 REMARK 3 S31: -0.1482 S32: 0.3767 S33: 0.4154 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 309 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6558 20.9745 19.6766 REMARK 3 T TENSOR REMARK 3 T11: 0.8625 T22: 0.3183 REMARK 3 T33: 0.4639 T12: -0.0669 REMARK 3 T13: -0.0002 T23: -0.0965 REMARK 3 L TENSOR REMARK 3 L11: 8.8476 L22: 3.6932 REMARK 3 L33: 2.3019 L12: 0.4480 REMARK 3 L13: -1.1566 L23: -2.8634 REMARK 3 S TENSOR REMARK 3 S11: 0.2081 S12: -0.4577 S13: 1.1076 REMARK 3 S21: 0.4577 S22: -0.5976 S23: -0.0137 REMARK 3 S31: -1.0498 S32: 0.0080 S33: 0.3282 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 321 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2512 -5.8040 12.9327 REMARK 3 T TENSOR REMARK 3 T11: 0.6297 T22: 0.2504 REMARK 3 T33: 0.2793 T12: -0.0079 REMARK 3 T13: 0.0237 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.7396 L22: 2.3431 REMARK 3 L33: 2.7360 L12: 0.9581 REMARK 3 L13: -1.2654 L23: -0.2956 REMARK 3 S TENSOR REMARK 3 S11: -0.1228 S12: 0.1994 S13: -0.2216 REMARK 3 S21: -0.2520 S22: 0.0355 S23: 0.0798 REMARK 3 S31: 0.6778 S32: -0.1762 S33: 0.0878 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 421 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7856 5.2152 16.6008 REMARK 3 T TENSOR REMARK 3 T11: 0.5562 T22: 0.1901 REMARK 3 T33: 0.1980 T12: 0.0381 REMARK 3 T13: 0.0601 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 2.0404 L22: 2.6634 REMARK 3 L33: 2.8918 L12: 0.8078 REMARK 3 L13: -0.3552 L23: -0.4712 REMARK 3 S TENSOR REMARK 3 S11: 0.1174 S12: -0.0153 S13: 0.0301 REMARK 3 S21: 0.2260 S22: -0.0623 S23: 0.1949 REMARK 3 S31: -0.1181 S32: 0.0198 S33: -0.0718 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 490 THROUGH 574 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4911 9.3109 7.0274 REMARK 3 T TENSOR REMARK 3 T11: 0.5649 T22: 0.2203 REMARK 3 T33: 0.2041 T12: 0.0180 REMARK 3 T13: 0.0085 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.2495 L22: 2.5209 REMARK 3 L33: 2.5502 L12: 0.7346 REMARK 3 L13: -1.1913 L23: -0.4546 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: 0.2686 S13: 0.2260 REMARK 3 S21: -0.4344 S22: 0.1203 S23: 0.0979 REMARK 3 S31: -0.2003 S32: -0.0097 S33: -0.1216 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 1 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4411 13.5550 0.0720 REMARK 3 T TENSOR REMARK 3 T11: 0.8955 T22: 0.5495 REMARK 3 T33: 0.3036 T12: -0.0060 REMARK 3 T13: -0.0594 T23: 0.1726 REMARK 3 L TENSOR REMARK 3 L11: 2.4033 L22: 4.1269 REMARK 3 L33: 1.1667 L12: -1.7001 REMARK 3 L13: -1.5605 L23: 1.1523 REMARK 3 S TENSOR REMARK 3 S11: 0.3219 S12: 0.7812 S13: 0.1309 REMARK 3 S21: -0.4294 S22: -0.2285 S23: 0.6494 REMARK 3 S31: -0.4723 S32: -0.7422 S33: -0.1593 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 24 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8331 -2.0998 -3.0047 REMARK 3 T TENSOR REMARK 3 T11: 1.1254 T22: 0.4424 REMARK 3 T33: 0.2732 T12: 0.0317 REMARK 3 T13: 0.0541 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 2.5953 L22: 1.4202 REMARK 3 L33: 4.8178 L12: 0.1383 REMARK 3 L13: -1.7685 L23: -1.3017 REMARK 3 S TENSOR REMARK 3 S11: 0.1532 S12: 0.0156 S13: -0.0941 REMARK 3 S21: -0.2840 S22: -0.0712 S23: 0.2363 REMARK 3 S31: 0.1288 S32: -0.4052 S33: -0.0755 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27532 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6TKG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.2 M AMMONIUM REMARK 280 ACETATE, 25% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.94550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.39400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.94550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.39400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR L 285 REMARK 465 PHE L 286 REMARK 465 GLY L 287 REMARK 465 SER L 288 REMARK 465 GLY L 289 REMARK 465 GLU L 290 REMARK 465 ARG L 320 REMARK 465 TRP H 468 REMARK 465 THR H 469 REMARK 465 ALA H 470 REMARK 465 ASN H 471 REMARK 465 VAL H 472 REMARK 465 GLY H 473 REMARK 465 LYS H 474 REMARK 465 ASP H 575 REMARK 465 GLN H 576 REMARK 465 PHE H 577 REMARK 465 GLY H 578 REMARK 465 GLU H 579 REMARK 465 SMF I 12 REMARK 465 GLY I 13 REMARK 465 ASP I 14 REMARK 465 SER I 15 REMARK 465 SER I 16 REMARK 465 GLU I 17 REMARK 465 GLU I 18 REMARK 465 VAL I 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 754 O HOH H 796 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 299 -85.94 -125.88 REMARK 500 HIS H 386 -60.32 -129.23 REMARK 500 ASN H 394 14.91 57.68 REMARK 500 ILE H 395 -56.62 -122.88 REMARK 500 GLU H 414 -90.39 -121.51 REMARK 500 GLU H 414 -90.39 -123.71 REMARK 500 LEU H 416 32.74 70.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG H 553 O REMARK 620 2 LYS H 556 O 92.2 REMARK 620 3 HOH H 741 O 90.3 88.8 REMARK 620 4 HOH H 743 O 160.8 70.3 81.8 REMARK 620 5 HOH H 747 O 105.2 162.6 90.0 92.3 REMARK 620 6 HOH H 793 O 94.7 82.4 170.1 90.9 96.9 REMARK 620 N 1 2 3 4 5 DBREF 7PHX L 285 320 UNP P00734 THRB_HUMAN 328 363 DBREF 7PHX H 321 579 UNP P00734 THRB_HUMAN 364 622 DBREF 7PHX I 1 32 UNP O97373 TTI_GLOMM 22 53 SEQADV 7PHX SMF I 9 UNP O97373 TYR 30 MODIFIED RESIDUE SEQADV 7PHX SMF I 12 UNP O97373 TYR 33 MODIFIED RESIDUE SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 I 32 GLY GLU PRO GLY ALA PRO ILE ASP SMF ASP GLU SMF GLY SEQRES 2 I 32 ASP SER SER GLU GLU VAL GLY GLY THR PRO LEU HIS GLU SEQRES 3 I 32 ILE PRO GLY ILE ARG LEU HET SMF I 9 16 HET NAG H 601 14 HET NA H 602 1 HETNAM SMF 4-SULFOMETHYL-L-PHENYLALANINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 SMF C10 H13 N O5 S FORMUL 4 NAG C8 H15 N O6 FORMUL 5 NA NA 1+ FORMUL 6 HOH *133(H2 O) HELIX 1 AA1 PHE L 299 SER L 303 5 5 HELIX 2 AA2 THR L 308 ILE L 317 1 10 HELIX 3 AA3 ALA H 361 LEU H 365 1 5 HELIX 4 AA4 PRO H 368 ASP H 371 5 4 HELIX 5 AA5 THR H 375 ASN H 377 5 3 HELIX 6 AA6 ASP H 442 LEU H 450 1 9 HELIX 7 AA7 GLU H 489 SER H 496 1 8 HELIX 8 AA8 LEU H 566 ILE H 574 1 9 HELIX 9 AA9 PRO I 23 ILE I 27 5 5 SHEET 1 AA1 7 SER H 325 ASP H 326 0 SHEET 2 AA1 7 GLN H 481 PRO H 486 -1 O VAL H 482 N SER H 325 SHEET 3 AA1 7 LYS H 455 GLY H 460 -1 N VAL H 458 O VAL H 483 SHEET 4 AA1 7 PRO H 528 LYS H 532 -1 O VAL H 530 N ARG H 457 SHEET 5 AA1 7 TRP H 539 GLU H 549 -1 O TYR H 540 N MET H 531 SHEET 6 AA1 7 GLY H 558 HIS H 562 -1 O PHE H 559 N TRP H 547 SHEET 7 AA1 7 MET H 505 ALA H 508 -1 N PHE H 506 O TYR H 560 SHEET 1 AA2 6 SER H 325 ASP H 326 0 SHEET 2 AA2 6 GLN H 481 PRO H 486 -1 O VAL H 482 N SER H 325 SHEET 3 AA2 6 LYS H 455 GLY H 460 -1 N VAL H 458 O VAL H 483 SHEET 4 AA2 6 PRO H 528 LYS H 532 -1 O VAL H 530 N ARG H 457 SHEET 5 AA2 6 TRP H 539 GLU H 549 -1 O TYR H 540 N MET H 531 SHEET 6 AA2 6 ILE I 30 ARG I 31 -1 O ARG I 31 N GLY H 548 SHEET 1 AA3 7 LYS H 397 SER H 399 0 SHEET 2 AA3 7 LEU H 379 ILE H 383 -1 N ILE H 383 O LYS H 397 SHEET 3 AA3 7 GLN H 335 ARG H 340 -1 N PHE H 339 O LEU H 380 SHEET 4 AA3 7 GLU H 345 LEU H 352 -1 O GLU H 345 N ARG H 340 SHEET 5 AA3 7 TRP H 357 THR H 360 -1 O LEU H 359 N SER H 351 SHEET 6 AA3 7 ALA H 421 LEU H 425 -1 O ALA H 421 N THR H 360 SHEET 7 AA3 7 LEU H 401 ILE H 406 -1 N GLU H 402 O LYS H 424 SHEET 1 AA4 2 LEU H 366 TYR H 367 0 SHEET 2 AA4 2 LYS H 372 ASN H 373 -1 O LYS H 372 N TYR H 367 SSBOND 1 CYS L 293 CYS H 439 1555 1555 2.05 SSBOND 2 CYS H 348 CYS H 364 1555 1555 2.03 SSBOND 3 CYS H 493 CYS H 507 1555 1555 2.02 SSBOND 4 CYS H 521 CYS H 551 1555 1555 2.07 LINK ND2 ASN H 373 C1 NAG H 601 1555 1555 1.44 LINK C ASP I 8 N SMF I 9 1555 1555 1.33 LINK C SMF I 9 N ASP I 10 1555 1555 1.33 LINK O ARG H 553 NA NA H 602 1555 1555 2.25 LINK O LYS H 556 NA NA H 602 1555 1555 2.52 LINK NA NA H 602 O HOH H 741 1555 1555 2.82 LINK NA NA H 602 O HOH H 743 1555 1555 2.45 LINK NA NA H 602 O HOH H 747 1555 1555 2.48 LINK NA NA H 602 O HOH H 793 1555 1555 2.34 CISPEP 1 SER H 342 PRO H 343 0 1.30 CRYST1 43.700 80.788 85.891 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022883 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011643 0.00000