HEADER RNA BINDING PROTEIN 23-AUG-21 7PJA TITLE CRYSTAL STRUCTURE OF YTHDC1 WITH COMPOUND PSI_DC1_002 COMPND MOL_ID: 1; COMPND 2 MOLECULE: YTH DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SPLICING FACTOR YT521,YT521-B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YTHDC1, KIAA1966, YT521; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS YTHDC1, INHIBITOR, COMPLEX, M6A, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.K.BEDI,D.HUANG,A.CAFLISCH REVDAT 3 31-JAN-24 7PJA 1 REMARK REVDAT 2 15-JUN-22 7PJA 1 JRNL REVDAT 1 20-OCT-21 7PJA 0 JRNL AUTH Y.LI,R.K.BEDI,F.NAI,V.VON ROTEN,A.DOLBOIS,F.ZALESAK, JRNL AUTH 2 R.NACHAWATI,D.HUANG,A.CAFLISCH JRNL TITL STRUCTURE-BASED DESIGN OF LIGANDS OF THE M6A-RNA READER JRNL TITL 2 YTHDC1 JRNL REF EUR J MED CHEM REP V. 5 00057 2022 JRNL REFN ESSN 2772-4174 JRNL DOI 10.1016/J.EJMCR.2022.100057 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 25487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6800 - 3.8500 0.99 2798 148 0.1558 0.2113 REMARK 3 2 3.8500 - 3.0600 0.99 2746 145 0.1711 0.2558 REMARK 3 3 3.0600 - 2.6700 0.99 2738 145 0.2070 0.2255 REMARK 3 4 2.6700 - 2.4300 0.99 2737 144 0.2163 0.2943 REMARK 3 5 2.4300 - 2.2500 0.99 2778 146 0.2238 0.3151 REMARK 3 6 2.2500 - 2.1200 0.98 2719 143 0.2548 0.3305 REMARK 3 7 2.1200 - 2.0200 1.00 2747 145 0.2474 0.2944 REMARK 3 8 2.0200 - 1.9300 0.99 2748 143 0.3013 0.3806 REMARK 3 9 1.9300 - 1.8500 0.80 2201 116 0.3822 0.4123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.291 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.965 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2678 REMARK 3 ANGLE : 1.012 3620 REMARK 3 CHIRALITY : 0.056 391 REMARK 3 PLANARITY : 0.009 452 REMARK 3 DIHEDRAL : 6.837 349 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PJA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25710 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 39.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R3H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M AMMONIUM SULPHATE, REMARK 280 0.1M BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.04500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 SER A 334 REMARK 465 SER A 335 REMARK 465 GLY A 336 REMARK 465 ARG A 337 REMARK 465 GLU A 338 REMARK 465 ASN A 339 REMARK 465 LEU A 340 REMARK 465 TYR A 341 REMARK 465 PHE A 342 REMARK 465 GLN A 343 REMARK 465 ARG A 508 REMARK 465 HIS A 509 REMARK 465 MET B 327 REMARK 465 HIS B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 465 SER B 334 REMARK 465 SER B 335 REMARK 465 GLY B 336 REMARK 465 ARG B 337 REMARK 465 GLU B 338 REMARK 465 ASN B 339 REMARK 465 LEU B 340 REMARK 465 TYR B 341 REMARK 465 PHE B 342 REMARK 465 GLN B 343 REMARK 465 ARG B 508 REMARK 465 HIS B 509 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 366 CG CD OE1 OE2 REMARK 470 LYS A 374 CD CE NZ REMARK 470 ARG A 395 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 437 CG CD CE NZ REMARK 470 LYS A 444 CE NZ REMARK 470 LYS A 457 CE NZ REMARK 470 ARG A 475 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 483 CD OE1 OE2 REMARK 470 LYS B 385 CG CD CE NZ REMARK 470 HIS B 420 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 424 OG REMARK 470 LYS B 437 CG CD CE NZ REMARK 470 LYS B 444 CE NZ REMARK 470 ARG B 475 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 385 O HOH A 701 2.05 REMARK 500 NH1 ARG A 392 OE2 GLU A 418 2.08 REMARK 500 OE1 GLN B 478 O HOH B 701 2.09 REMARK 500 OG SER B 435 O HOH B 702 2.09 REMARK 500 O HOH A 762 O HOH A 772 2.11 REMARK 500 O HOH B 703 O HOH B 753 2.11 REMARK 500 OE1 GLU B 496 O HOH B 703 2.12 REMARK 500 O1 SO4 A 604 O HOH A 702 2.13 REMARK 500 O HOH A 801 O HOH A 833 2.17 REMARK 500 O HOH A 744 O HOH A 831 2.19 REMARK 500 O HOH B 810 O HOH B 821 2.19 REMARK 500 O HOH A 704 O HOH A 741 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 739 O HOH B 832 2646 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 405 -3.01 74.09 REMARK 500 PRO B 431 -178.99 -69.68 REMARK 500 ALA B 432 -75.02 -40.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 7PJA A 345 509 UNP Q96MU7 YTDC1_HUMAN 345 509 DBREF 7PJA B 345 509 UNP Q96MU7 YTDC1_HUMAN 345 509 SEQADV 7PJA MET A 327 UNP Q96MU7 INITIATING METHIONINE SEQADV 7PJA HIS A 328 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA HIS A 329 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA HIS A 330 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA HIS A 331 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA HIS A 332 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA HIS A 333 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA SER A 334 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA SER A 335 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA GLY A 336 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA ARG A 337 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA GLU A 338 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA ASN A 339 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA LEU A 340 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA TYR A 341 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA PHE A 342 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA GLN A 343 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA GLY A 344 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA MET B 327 UNP Q96MU7 INITIATING METHIONINE SEQADV 7PJA HIS B 328 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA HIS B 329 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA HIS B 330 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA HIS B 331 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA HIS B 332 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA HIS B 333 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA SER B 334 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA SER B 335 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA GLY B 336 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA ARG B 337 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA GLU B 338 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA ASN B 339 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA LEU B 340 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA TYR B 341 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA PHE B 342 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA GLN B 343 UNP Q96MU7 EXPRESSION TAG SEQADV 7PJA GLY B 344 UNP Q96MU7 EXPRESSION TAG SEQRES 1 A 183 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 183 LEU TYR PHE GLN GLY THR SER LYS LEU LYS TYR VAL LEU SEQRES 3 A 183 GLN ASP ALA ARG PHE PHE LEU ILE LYS SER ASN ASN HIS SEQRES 4 A 183 GLU ASN VAL SER LEU ALA LYS ALA LYS GLY VAL TRP SER SEQRES 5 A 183 THR LEU PRO VAL ASN GLU LYS LYS LEU ASN LEU ALA PHE SEQRES 6 A 183 ARG SER ALA ARG SER VAL ILE LEU ILE PHE SER VAL ARG SEQRES 7 A 183 GLU SER GLY LYS PHE GLN GLY PHE ALA ARG LEU SER SER SEQRES 8 A 183 GLU SER HIS HIS GLY GLY SER PRO ILE HIS TRP VAL LEU SEQRES 9 A 183 PRO ALA GLY MET SER ALA LYS MET LEU GLY GLY VAL PHE SEQRES 10 A 183 LYS ILE ASP TRP ILE CYS ARG ARG GLU LEU PRO PHE THR SEQRES 11 A 183 LYS SER ALA HIS LEU THR ASN PRO TRP ASN GLU HIS LYS SEQRES 12 A 183 PRO VAL LYS ILE GLY ARG ASP GLY GLN GLU ILE GLU LEU SEQRES 13 A 183 GLU CYS GLY THR GLN LEU CYS LEU LEU PHE PRO PRO ASP SEQRES 14 A 183 GLU SER ILE ASP LEU TYR GLN VAL ILE HIS LYS MET ARG SEQRES 15 A 183 HIS SEQRES 1 B 183 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 183 LEU TYR PHE GLN GLY THR SER LYS LEU LYS TYR VAL LEU SEQRES 3 B 183 GLN ASP ALA ARG PHE PHE LEU ILE LYS SER ASN ASN HIS SEQRES 4 B 183 GLU ASN VAL SER LEU ALA LYS ALA LYS GLY VAL TRP SER SEQRES 5 B 183 THR LEU PRO VAL ASN GLU LYS LYS LEU ASN LEU ALA PHE SEQRES 6 B 183 ARG SER ALA ARG SER VAL ILE LEU ILE PHE SER VAL ARG SEQRES 7 B 183 GLU SER GLY LYS PHE GLN GLY PHE ALA ARG LEU SER SER SEQRES 8 B 183 GLU SER HIS HIS GLY GLY SER PRO ILE HIS TRP VAL LEU SEQRES 9 B 183 PRO ALA GLY MET SER ALA LYS MET LEU GLY GLY VAL PHE SEQRES 10 B 183 LYS ILE ASP TRP ILE CYS ARG ARG GLU LEU PRO PHE THR SEQRES 11 B 183 LYS SER ALA HIS LEU THR ASN PRO TRP ASN GLU HIS LYS SEQRES 12 B 183 PRO VAL LYS ILE GLY ARG ASP GLY GLN GLU ILE GLU LEU SEQRES 13 B 183 GLU CYS GLY THR GLN LEU CYS LEU LEU PHE PRO PRO ASP SEQRES 14 B 183 GLU SER ILE ASP LEU TYR GLN VAL ILE HIS LYS MET ARG SEQRES 15 B 183 HIS HET 7RE A 601 8 HET GOL A 602 6 HET GOL A 603 6 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET 7RE B 601 8 HET GOL B 602 6 HET SO4 B 603 5 HET SO4 B 604 5 HET SO4 B 605 5 HETNAM 7RE 6-METHYL-3H-PYRIDIN-2-ONE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN 7RE 2(3H)-PYRIDINONE, 6-METHYL-; 6-METHYLPYRIDIN-2(3H)-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 7RE 2(C6 H7 N O) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 6 SO4 6(O4 S 2-) FORMUL 14 HOH *304(H2 O) HELIX 1 AA1 THR A 345 GLN A 353 1 9 HELIX 2 AA2 ASN A 364 GLY A 375 1 12 HELIX 3 AA3 LEU A 380 ALA A 394 1 15 HELIX 4 AA4 THR A 456 ALA A 459 5 4 HELIX 5 AA5 ASN A 463 GLU A 467 5 5 HELIX 6 AA6 GLU A 481 PHE A 492 1 12 HELIX 7 AA7 ASP A 499 MET A 507 1 9 HELIX 8 AA8 THR B 345 GLN B 353 1 9 HELIX 9 AA9 ASN B 364 GLY B 375 1 12 HELIX 10 AB1 LEU B 380 ALA B 394 1 15 HELIX 11 AB2 THR B 456 SER B 458 5 3 HELIX 12 AB3 ASN B 463 GLU B 467 5 5 HELIX 13 AB4 GLU B 481 PHE B 492 1 12 HELIX 14 AB5 LEU B 500 LYS B 506 1 7 SHEET 1 AA1 6 VAL A 376 SER A 378 0 SHEET 2 AA1 6 VAL A 442 CYS A 449 -1 O PHE A 443 N TRP A 377 SHEET 3 AA1 6 GLY A 411 LEU A 415 -1 N ARG A 414 O ASP A 446 SHEET 4 AA1 6 VAL A 397 VAL A 403 -1 N LEU A 399 O ALA A 413 SHEET 5 AA1 6 ARG A 356 SER A 362 1 N ARG A 356 O ILE A 398 SHEET 6 AA1 6 GLU A 479 ILE A 480 -1 O ILE A 480 N PHE A 357 SHEET 1 AA2 2 LYS A 408 PHE A 409 0 SHEET 2 AA2 2 LEU A 453 PRO A 454 -1 O LEU A 453 N PHE A 409 SHEET 1 AA3 6 VAL B 376 TRP B 377 0 SHEET 2 AA3 6 PHE B 443 CYS B 449 -1 O PHE B 443 N TRP B 377 SHEET 3 AA3 6 GLY B 411 LEU B 415 -1 N ARG B 414 O ASP B 446 SHEET 4 AA3 6 SER B 396 VAL B 403 -1 N LEU B 399 O ALA B 413 SHEET 5 AA3 6 ALA B 355 SER B 362 1 N ARG B 356 O ILE B 398 SHEET 6 AA3 6 GLU B 479 ILE B 480 -1 O ILE B 480 N PHE B 357 SHEET 1 AA4 2 LYS B 408 PHE B 409 0 SHEET 2 AA4 2 LEU B 453 PRO B 454 -1 O LEU B 453 N PHE B 409 CRYST1 39.010 102.090 41.250 90.00 105.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025634 0.000000 0.007278 0.00000 SCALE2 0.000000 0.009795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025201 0.00000 CONECT 2561 2562 CONECT 2562 2561 2566 2567 CONECT 2563 2564 2567 2568 CONECT 2564 2563 2565 CONECT 2565 2564 2566 CONECT 2566 2562 2565 CONECT 2567 2562 2563 CONECT 2568 2563 CONECT 2569 2570 2571 CONECT 2570 2569 CONECT 2571 2569 2572 2573 CONECT 2572 2571 CONECT 2573 2571 2574 CONECT 2574 2573 CONECT 2575 2576 2577 CONECT 2576 2575 CONECT 2577 2575 2578 2579 CONECT 2578 2577 CONECT 2579 2577 2580 CONECT 2580 2579 CONECT 2581 2582 2583 2584 2585 CONECT 2582 2581 CONECT 2583 2581 CONECT 2584 2581 CONECT 2585 2581 CONECT 2586 2587 2588 2589 2590 CONECT 2587 2586 CONECT 2588 2586 CONECT 2589 2586 CONECT 2590 2586 CONECT 2591 2592 2593 2594 2595 CONECT 2592 2591 CONECT 2593 2591 CONECT 2594 2591 CONECT 2595 2591 CONECT 2596 2597 CONECT 2597 2596 2601 2602 CONECT 2598 2599 2602 2603 CONECT 2599 2598 2600 CONECT 2600 2599 2601 CONECT 2601 2597 2600 CONECT 2602 2597 2598 CONECT 2603 2598 CONECT 2604 2605 2606 CONECT 2605 2604 CONECT 2606 2604 2607 2608 CONECT 2607 2606 CONECT 2608 2606 2609 CONECT 2609 2608 CONECT 2610 2611 2612 2613 2614 CONECT 2611 2610 CONECT 2612 2610 CONECT 2613 2610 CONECT 2614 2610 CONECT 2615 2616 2617 2618 2619 CONECT 2616 2615 CONECT 2617 2615 CONECT 2618 2615 CONECT 2619 2615 CONECT 2620 2621 2622 2623 2624 CONECT 2621 2620 CONECT 2622 2620 CONECT 2623 2620 CONECT 2624 2620 MASTER 324 0 11 14 16 0 0 6 2924 2 64 30 END