HEADER HYDROLASE 28-AUG-21 7PL2 TITLE CRYSTAL STRUCTURE OF CHOLINE-BINDING MODULE OF LYTB FROM STREPTOCOCCUS TITLE 2 PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ENDO-BETA-N-ACETYLGLUCOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MUREIN HYDROLASE,CHOLINE-BINDING MODULE; COMPND 5 EC: 3.2.1.96; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE (STRAIN ATCC BAA-255 / SOURCE 3 R6); SOURCE 4 ORGANISM_TAXID: 171101; SOURCE 5 STRAIN: ATCC BAA-255 / R6; SOURCE 6 GENE: LYTB, SPR0867; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLUCOSAMINIDASE, PEPTIDOGLYCAN HYDROLASE, HYDROLASE, CHOLINE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.MARTINEZ CABALLERO,J.A.HERMOSO REVDAT 5 07-FEB-24 7PL2 1 REMARK REVDAT 4 19-JUL-23 7PL2 1 JRNL REVDAT 3 12-JUL-23 7PL2 1 JRNL REVDAT 2 21-SEP-22 7PL2 1 KEYWDS REVDAT 1 07-SEP-22 7PL2 0 JRNL AUTH S.MARTINEZ-CABALLERO,C.FRETON,R.MOLINA,S.G.BARTUAL, JRNL AUTH 2 V.GUEGUEN-CHAIGNON,C.MERCY,F.GAGO,K.V.MAHASENAN,I.G.MUNOZ, JRNL AUTH 3 M.LEE,D.HESEK,S.MOBASHERY,J.A.HERMOSO,C.GRANGEASSE JRNL TITL MOLECULAR BASIS OF THE FINAL STEP OF CELL DIVISION IN JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE. JRNL REF CELL REP V. 42 12756 2023 JRNL REFN ESSN 2211-1247 JRNL PMID 37418323 JRNL DOI 10.1016/J.CELREP.2023.112756 REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18_3855 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 12870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7600 - 5.0900 0.94 2531 130 0.2073 0.2526 REMARK 3 2 5.0900 - 4.0400 0.96 2440 160 0.1780 0.2412 REMARK 3 3 4.0400 - 3.5300 0.98 2465 130 0.2155 0.3182 REMARK 3 4 3.5300 - 3.2100 0.96 2376 124 0.2788 0.3009 REMARK 3 5 3.2100 - 2.9800 0.97 2415 99 0.3119 0.3400 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A):-117.1017 96.6418 -25.7531 REMARK 3 T TENSOR REMARK 3 T11: 0.3004 T22: 0.6315 REMARK 3 T33: 0.3329 T12: 0.0250 REMARK 3 T13: 0.0383 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 4.2170 L22: 2.3456 REMARK 3 L33: 2.8336 L12: 2.5543 REMARK 3 L13: 1.9269 L23: 0.8910 REMARK 3 S TENSOR REMARK 3 S11: 0.3002 S12: 0.6347 S13: -0.5222 REMARK 3 S21: -0.1974 S22: 0.0968 S23: 0.0085 REMARK 3 S31: 0.1789 S32: -0.0302 S33: -0.1753 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -87.3593 86.7582 -8.6933 REMARK 3 T TENSOR REMARK 3 T11: 0.4221 T22: 0.6600 REMARK 3 T33: 0.6699 T12: 0.0532 REMARK 3 T13: -0.0822 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 2.9292 L22: 1.0137 REMARK 3 L33: 0.8212 L12: -1.3719 REMARK 3 L13: 1.6248 L23: -0.1960 REMARK 3 S TENSOR REMARK 3 S11: 0.4027 S12: 0.2569 S13: -0.7659 REMARK 3 S21: -0.0837 S22: -0.0396 S23: 0.2505 REMARK 3 S31: 0.1558 S32: 0.1486 S33: -0.2806 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.8209 77.3730 5.8169 REMARK 3 T TENSOR REMARK 3 T11: 0.2958 T22: 0.3328 REMARK 3 T33: 0.1088 T12: -0.0668 REMARK 3 T13: -0.0326 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.6789 L22: 3.7784 REMARK 3 L33: 2.6108 L12: -1.1144 REMARK 3 L13: -0.0707 L23: -0.1004 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.2262 S13: 0.2451 REMARK 3 S21: 0.0489 S22: -0.0050 S23: 0.1316 REMARK 3 S31: -0.0472 S32: -0.0649 S33: 0.0052 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 243 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6748 66.7058 13.7836 REMARK 3 T TENSOR REMARK 3 T11: 0.4570 T22: 0.6457 REMARK 3 T33: 0.8647 T12: 0.1204 REMARK 3 T13: -0.2033 T23: -0.1500 REMARK 3 L TENSOR REMARK 3 L11: 1.4439 L22: 1.3954 REMARK 3 L33: 0.7503 L12: 0.8303 REMARK 3 L13: 1.5314 L23: 0.5814 REMARK 3 S TENSOR REMARK 3 S11: 0.6046 S12: 0.8345 S13: -1.3041 REMARK 3 S21: 0.5564 S22: 0.1269 S23: -0.9693 REMARK 3 S31: 0.8949 S32: 0.7400 S33: -0.3140 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5389 70.3438 17.3022 REMARK 3 T TENSOR REMARK 3 T11: 0.4958 T22: 0.9789 REMARK 3 T33: 0.6126 T12: 0.0586 REMARK 3 T13: -0.1255 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 0.3674 L22: 2.5996 REMARK 3 L33: 3.2210 L12: 0.0136 REMARK 3 L13: 0.0368 L23: 2.7045 REMARK 3 S TENSOR REMARK 3 S11: 0.3305 S12: 0.0143 S13: -0.5328 REMARK 3 S21: 0.0514 S22: 0.2564 S23: -0.3544 REMARK 3 S31: 0.1882 S32: 0.4055 S33: -0.7724 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 308 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2343 60.7994 15.6479 REMARK 3 T TENSOR REMARK 3 T11: 0.7816 T22: 0.9492 REMARK 3 T33: 0.9584 T12: 0.1193 REMARK 3 T13: -0.3526 T23: -0.2547 REMARK 3 L TENSOR REMARK 3 L11: 1.0803 L22: 1.2657 REMARK 3 L33: 1.3614 L12: -0.4317 REMARK 3 L13: -0.6952 L23: 0.0177 REMARK 3 S TENSOR REMARK 3 S11: 0.7244 S12: 1.3509 S13: -0.5298 REMARK 3 S21: -0.8690 S22: -0.1959 S23: 0.9062 REMARK 3 S31: 0.6541 S32: 0.3867 S33: 0.0416 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1421 57.3541 26.4253 REMARK 3 T TENSOR REMARK 3 T11: 0.5706 T22: 0.6375 REMARK 3 T33: 0.9178 T12: 0.0430 REMARK 3 T13: -0.1404 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.4219 L22: 7.8571 REMARK 3 L33: 6.4585 L12: -2.6292 REMARK 3 L13: -2.8887 L23: 4.2205 REMARK 3 S TENSOR REMARK 3 S11: 0.5604 S12: 0.0538 S13: -1.7005 REMARK 3 S21: 0.6569 S22: -0.4229 S23: 0.4230 REMARK 3 S31: 0.9893 S32: 0.0889 S33: -0.1465 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 352 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7789 62.6906 25.5525 REMARK 3 T TENSOR REMARK 3 T11: 0.6156 T22: 0.8177 REMARK 3 T33: 0.5508 T12: 0.0415 REMARK 3 T13: -0.0721 T23: -0.1300 REMARK 3 L TENSOR REMARK 3 L11: 2.4042 L22: 0.9034 REMARK 3 L33: 5.6883 L12: 0.2879 REMARK 3 L13: -3.0158 L23: -1.4181 REMARK 3 S TENSOR REMARK 3 S11: 0.3178 S12: 0.2765 S13: -0.1326 REMARK 3 S21: 0.0427 S22: -0.2275 S23: 0.1618 REMARK 3 S31: -0.2398 S32: 0.7359 S33: 0.1542 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 375 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5578 53.7539 25.1769 REMARK 3 T TENSOR REMARK 3 T11: 0.7473 T22: 1.0779 REMARK 3 T33: 1.0039 T12: 0.2119 REMARK 3 T13: -0.1361 T23: -0.1254 REMARK 3 L TENSOR REMARK 3 L11: 4.1572 L22: 3.6967 REMARK 3 L33: 0.8505 L12: 2.5886 REMARK 3 L13: -0.5812 L23: 0.9117 REMARK 3 S TENSOR REMARK 3 S11: -0.1649 S12: 0.0736 S13: -1.0308 REMARK 3 S21: -0.0159 S22: -0.0862 S23: -1.1548 REMARK 3 S31: 0.2023 S32: 0.5797 S33: 0.5089 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292116494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979312 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12892 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.980 REMARK 200 RESOLUTION RANGE LOW (A) : 48.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CNL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM ACETATE BIS-TRIS PROPANE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLY A 400 REMARK 465 LYS A 401 REMARK 465 ALA A 402 REMARK 465 THR A 403 REMARK 465 ASN A 404 REMARK 465 LYS A 405 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 35 -174.03 -65.42 REMARK 500 LYS A 131 61.31 39.92 REMARK 500 SER A 146 75.57 19.04 REMARK 500 ASN A 150 -106.11 45.74 REMARK 500 ASP A 212 -89.43 -96.25 REMARK 500 GLU A 214 -11.74 -142.06 REMARK 500 LYS A 243 -167.76 -104.25 REMARK 500 ASN A 251 33.81 71.26 REMARK 500 LYS A 257 -108.11 48.52 REMARK 500 ASN A 295 69.38 31.32 REMARK 500 GLU A 296 149.80 -173.60 REMARK 500 ASP A 300 -85.72 -95.26 REMARK 500 TYR A 335 109.65 -58.14 REMARK 500 LYS A 345 -109.47 44.80 REMARK 500 GLU A 359 -64.54 -125.01 REMARK 500 LYS A 382 -56.31 -125.18 REMARK 500 ASN A 383 78.68 -118.25 REMARK 500 REMARK 500 REMARK: NULL DBREF 7PL2 A 1 405 UNP P59206 LYTB_STRR6 24 428 SEQRES 1 A 405 SER ASP GLY THR TRP GLN GLY LYS GLN TYR LEU LYS GLU SEQRES 2 A 405 ASP GLY SER GLN ALA ALA ASN GLU TRP VAL PHE ASP THR SEQRES 3 A 405 HIS TYR GLN SER TRP PHE TYR ILE LYS ALA ASP ALA ASN SEQRES 4 A 405 TYR ALA GLU ASN GLU TRP LEU LYS GLN GLY ASP ASP TYR SEQRES 5 A 405 PHE TYR LEU LYS SER GLY GLY TYR MET ALA LYS SER GLU SEQRES 6 A 405 TRP VAL GLU ASP LYS GLY ALA PHE TYR TYR LEU ASP GLN SEQRES 7 A 405 ASP GLY LYS MET LYS ARG ASN ALA TRP VAL GLY THR SER SEQRES 8 A 405 TYR VAL GLY ALA THR GLY ALA LYS VAL ILE GLU ASP TRP SEQRES 9 A 405 VAL TYR ASP SER GLN TYR ASP ALA TRP PHE TYR ILE LYS SEQRES 10 A 405 ALA ASP GLY GLN HIS ALA GLU LYS GLU TRP LEU GLN ILE SEQRES 11 A 405 LYS GLY LYS ASP TYR TYR PHE LYS SER GLY GLY TYR LEU SEQRES 12 A 405 LEU THR SER GLN TRP ILE ASN GLN ALA TYR VAL ASN ALA SEQRES 13 A 405 SER GLY ALA LYS VAL GLN GLN GLY TRP LEU PHE ASP LYS SEQRES 14 A 405 GLN TYR GLN SER TRP PHE TYR ILE LYS GLU ASN GLY ASN SEQRES 15 A 405 TYR ALA ASP LYS GLU TRP ILE PHE GLU ASN GLY HIS TYR SEQRES 16 A 405 TYR TYR LEU LYS SER GLY GLY TYR MET ALA ALA ASN GLU SEQRES 17 A 405 TRP ILE TRP ASP LYS GLU SER TRP PHE TYR LEU LYS PHE SEQRES 18 A 405 ASP GLY LYS ILE ALA GLU LYS GLU TRP VAL TYR ASP SER SEQRES 19 A 405 HIS SER GLN ALA TRP TYR TYR PHE LYS SER GLY GLY TYR SEQRES 20 A 405 MET ALA ALA ASN GLU TRP ILE TRP ASP LYS GLU SER TRP SEQRES 21 A 405 PHE TYR LEU LYS PHE ASP GLY LYS MET ALA GLU LYS GLU SEQRES 22 A 405 TRP VAL TYR ASP SER HIS SER GLN ALA TRP TYR TYR PHE SEQRES 23 A 405 LYS SER GLY GLY TYR MET THR ALA ASN GLU TRP ILE TRP SEQRES 24 A 405 ASP LYS GLU SER TRP PHE TYR LEU LYS SER ASP GLY LYS SEQRES 25 A 405 ILE ALA GLU LYS GLU TRP VAL TYR ASP SER HIS SER GLN SEQRES 26 A 405 ALA TRP TYR TYR PHE LYS SER GLY GLY TYR MET THR ALA SEQRES 27 A 405 ASN GLU TRP ILE TRP ASP LYS GLU SER TRP PHE TYR LEU SEQRES 28 A 405 LYS SER ASP GLY LYS MET ALA GLU LYS GLU TRP VAL TYR SEQRES 29 A 405 ASP SER HIS SER GLN ALA TRP TYR TYR PHE LYS SER GLY SEQRES 30 A 405 GLY TYR MET ALA LYS ASN GLU THR VAL ASP GLY TYR GLN SEQRES 31 A 405 LEU GLY SER ASP GLY LYS TRP LEU GLY GLY LYS ALA THR SEQRES 32 A 405 ASN LYS HET CHT A1901 21 HET CHT A1902 21 HET CHT A1903 21 HET CHT A1904 21 HET CHT A1905 21 HET CHT A1906 21 HET CHT A1907 21 HET CHT A1908 21 HET CHT A1909 21 HET CHT A1910 21 HET CHT A1911 21 HET CHT A1912 21 HET CHT A1913 21 HET CHT A1914 21 HET CHT A1915 21 HET CHT A1916 21 HET CHT A1917 21 HETNAM CHT CHOLINE ION FORMUL 2 CHT 17(C5 H14 N O 1+) FORMUL 19 HOH *26(H2 O) SHEET 1 AA1 2 THR A 4 GLN A 6 0 SHEET 2 AA1 2 GLN A 9 LEU A 11 -1 O GLN A 9 N GLN A 6 SHEET 1 AA2 2 GLU A 21 ASP A 25 0 SHEET 2 AA2 2 SER A 30 ILE A 34 -1 O PHE A 32 N VAL A 23 SHEET 1 AA3 2 GLU A 44 GLN A 48 0 SHEET 2 AA3 2 ASP A 51 LEU A 55 -1 O PHE A 53 N LEU A 46 SHEET 1 AA4 2 GLU A 65 ASP A 69 0 SHEET 2 AA4 2 ALA A 72 LEU A 76 -1 O ALA A 72 N ASP A 69 SHEET 1 AA5 2 ALA A 86 VAL A 88 0 SHEET 2 AA5 2 SER A 91 VAL A 93 -1 O SER A 91 N VAL A 88 SHEET 1 AA6 2 ASP A 103 ASP A 107 0 SHEET 2 AA6 2 ALA A 112 ILE A 116 -1 O PHE A 114 N VAL A 105 SHEET 1 AA7 2 GLU A 126 ILE A 130 0 SHEET 2 AA7 2 LYS A 133 PHE A 137 -1 O TYR A 135 N LEU A 128 SHEET 1 AA8 2 GLN A 147 ILE A 149 0 SHEET 2 AA8 2 ALA A 152 VAL A 154 -1 O ALA A 152 N ILE A 149 SHEET 1 AA9 2 GLY A 164 ASP A 168 0 SHEET 2 AA9 2 SER A 173 ILE A 177 -1 O ILE A 177 N GLY A 164 SHEET 1 AB1 2 GLU A 187 GLU A 191 0 SHEET 2 AB1 2 HIS A 194 LEU A 198 -1 O HIS A 194 N GLU A 191 SHEET 1 AB2 2 GLU A 208 TRP A 211 0 SHEET 2 AB2 2 TRP A 216 LEU A 219 -1 O PHE A 217 N ILE A 210 SHEET 1 AB3 2 GLU A 229 ASP A 233 0 SHEET 2 AB3 2 ALA A 238 PHE A 242 -1 O ALA A 238 N ASP A 233 SHEET 1 AB4 2 GLU A 252 ASP A 256 0 SHEET 2 AB4 2 SER A 259 LEU A 263 -1 O SER A 259 N ASP A 256 SHEET 1 AB5 2 GLU A 273 ASP A 277 0 SHEET 2 AB5 2 ALA A 282 PHE A 286 -1 O TYR A 284 N VAL A 275 SHEET 1 AB6 2 GLU A 296 TRP A 299 0 SHEET 2 AB6 2 TRP A 304 LEU A 307 -1 O PHE A 305 N ILE A 298 SHEET 1 AB7 2 GLU A 317 ASP A 321 0 SHEET 2 AB7 2 ALA A 326 PHE A 330 -1 O PHE A 330 N GLU A 317 SHEET 1 AB8 2 GLU A 340 TRP A 343 0 SHEET 2 AB8 2 TRP A 348 LEU A 351 -1 O LEU A 351 N GLU A 340 SHEET 1 AB9 3 GLU A 361 ASP A 365 0 SHEET 2 AB9 3 ALA A 370 LYS A 375 -1 O TYR A 372 N VAL A 363 SHEET 3 AB9 3 TYR A 379 MET A 380 -1 O TYR A 379 N LYS A 375 SHEET 1 AC1 2 THR A 385 VAL A 386 0 SHEET 2 AC1 2 TYR A 389 GLN A 390 -1 O TYR A 389 N VAL A 386 CRYST1 202.100 202.100 26.468 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004948 0.002857 0.000000 0.00000 SCALE2 0.000000 0.005714 0.000000 0.00000 SCALE3 0.000000 0.000000 0.037781 0.00000