HEADER TRANSFERASE 31-AUG-21 7PLJ TITLE STRUCTURE OF POLYPHOSPHATE KINASE 2 FROM DEINOCOCCUS RADIODURANS, IN TITLE 2 COMPLEX WITH ATP AND POLYPHOSPHATES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PPK2 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS (STRAIN ATCC 13939 / SOURCE 3 DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / SOURCE 4 VKM B-1422); SOURCE 5 ORGANISM_TAXID: 243230; SOURCE 6 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 7 NCIMB 9279 / R1 / VKM B-1422; SOURCE 8 GENE: DR_0132; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYPHOSPHATE, ATP, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.T.N.SILVA,C.V.ROMAO REVDAT 2 07-FEB-24 7PLJ 1 REMARK REVDAT 1 22-MAR-23 7PLJ 0 JRNL AUTH S.T.N.SILVA,C.V.ROMAO JRNL TITL STRUCTURE OF POLYPHOSPHATE KINASE 2 FROM DEINOCOCCUS JRNL TITL 2 RADIODURANS, IN COMPLEX WITH ATP AND POLYPHOSPHATES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.7 REMARK 3 NUMBER OF REFLECTIONS : 136223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0400 - 5.0900 0.99 5741 297 0.1697 0.1839 REMARK 3 2 5.0800 - 4.0400 1.00 5736 288 0.1267 0.1428 REMARK 3 3 4.0400 - 3.5300 1.00 5717 286 0.1294 0.1579 REMARK 3 4 3.5300 - 3.2100 1.00 5702 298 0.1448 0.1880 REMARK 3 5 3.2000 - 2.9800 1.00 5707 311 0.1612 0.1969 REMARK 3 6 2.9800 - 2.8000 1.00 5727 277 0.1705 0.2002 REMARK 3 7 2.8000 - 2.6600 1.00 5645 313 0.1745 0.1979 REMARK 3 8 2.6600 - 2.5400 1.00 5658 319 0.1752 0.2114 REMARK 3 9 2.5400 - 2.4500 1.00 5680 286 0.1752 0.2069 REMARK 3 10 2.4500 - 2.3600 1.00 5709 283 0.1692 0.2176 REMARK 3 11 2.3600 - 2.2900 1.00 5665 317 0.1716 0.2124 REMARK 3 12 2.2900 - 2.2200 0.82 4702 251 0.1708 0.2158 REMARK 3 13 2.2200 - 2.1600 1.00 5673 309 0.1688 0.2129 REMARK 3 14 2.1600 - 2.1100 1.00 5661 301 0.1782 0.2373 REMARK 3 15 2.1100 - 2.0600 1.00 5688 291 0.1912 0.2334 REMARK 3 16 2.0600 - 2.0200 1.00 5702 308 0.1876 0.2318 REMARK 3 17 2.0200 - 1.9800 1.00 5638 335 0.1929 0.2430 REMARK 3 18 1.9800 - 1.9400 1.00 5679 281 0.2085 0.2476 REMARK 3 19 1.9400 - 1.9100 0.65 3745 181 0.2254 0.2452 REMARK 3 20 1.9100 - 1.8700 0.93 5239 259 0.2236 0.2537 REMARK 3 21 1.8700 - 1.8400 0.83 4704 258 0.2300 0.2709 REMARK 3 22 1.8400 - 1.8200 0.68 3843 220 0.2418 0.2309 REMARK 3 23 1.8200 - 1.7900 0.54 3085 157 0.2477 0.2645 REMARK 3 24 1.7900 - 1.7600 0.42 2336 135 0.2382 0.2800 REMARK 3 25 1.7600 - 1.7400 0.31 1784 92 0.2417 0.2852 REMARK 3 26 1.7400 - 1.7200 0.24 1364 69 0.2316 0.2829 REMARK 3 27 1.7200 - 1.7000 0.16 918 38 0.2351 0.2128 REMARK 3 28 1.7000 - 1.6800 0.10 551 35 0.2246 0.2454 REMARK 3 29 1.6800 - 1.6600 0.05 294 15 0.2371 0.2325 REMARK 3 30 1.6600 - 1.6400 0.02 114 6 0.2039 0.4564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.168 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.678 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 9373 REMARK 3 ANGLE : 1.180 12758 REMARK 3 CHIRALITY : 0.069 1319 REMARK 3 PLANARITY : 0.014 1594 REMARK 3 DIHEDRAL : 14.544 3456 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 25 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.2613 -32.0930 32.8301 REMARK 3 T TENSOR REMARK 3 T11: 0.2866 T22: 0.1814 REMARK 3 T33: 0.1966 T12: 0.0013 REMARK 3 T13: 0.0843 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.7476 L22: 1.6082 REMARK 3 L33: 3.4829 L12: -0.6704 REMARK 3 L13: -1.1890 L23: 1.6642 REMARK 3 S TENSOR REMARK 3 S11: -0.1908 S12: -0.1585 S13: -0.2152 REMARK 3 S21: 0.3486 S22: 0.1524 S23: 0.1382 REMARK 3 S31: 0.6538 S32: 0.0259 S33: 0.0361 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1601 -14.4758 31.9037 REMARK 3 T TENSOR REMARK 3 T11: 0.1030 T22: 0.1251 REMARK 3 T33: 0.1041 T12: -0.0166 REMARK 3 T13: -0.0014 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 4.9922 L22: 1.3270 REMARK 3 L33: 7.7239 L12: 0.4632 REMARK 3 L13: -4.7177 L23: -0.0863 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: -0.4425 S13: 0.1219 REMARK 3 S21: 0.1109 S22: 0.0115 S23: -0.0773 REMARK 3 S31: -0.2723 S32: 0.4831 S33: -0.0274 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.0726 -18.1673 22.9800 REMARK 3 T TENSOR REMARK 3 T11: 0.0870 T22: 0.1094 REMARK 3 T33: 0.0781 T12: -0.0164 REMARK 3 T13: 0.0398 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 3.6647 L22: 1.0901 REMARK 3 L33: 1.1177 L12: 0.9582 REMARK 3 L13: -0.0371 L23: -0.0474 REMARK 3 S TENSOR REMARK 3 S11: -0.1091 S12: -0.0088 S13: -0.1309 REMARK 3 S21: 0.1055 S22: 0.0011 S23: 0.1307 REMARK 3 S31: 0.0080 S32: -0.1634 S33: 0.0614 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2765 -15.4747 11.8712 REMARK 3 T TENSOR REMARK 3 T11: 0.1065 T22: 0.1042 REMARK 3 T33: 0.1251 T12: -0.0221 REMARK 3 T13: 0.0281 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.7362 L22: 0.3123 REMARK 3 L33: 3.0270 L12: 0.3510 REMARK 3 L13: 1.4518 L23: 0.5578 REMARK 3 S TENSOR REMARK 3 S11: -0.0339 S12: -0.0406 S13: 0.1007 REMARK 3 S21: 0.0276 S22: -0.0342 S23: 0.0565 REMARK 3 S31: -0.1623 S32: -0.0782 S33: 0.0721 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.7485 -28.3231 13.4973 REMARK 3 T TENSOR REMARK 3 T11: 0.1301 T22: 0.1094 REMARK 3 T33: 0.1228 T12: -0.0408 REMARK 3 T13: 0.0373 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.6346 L22: 1.0066 REMARK 3 L33: 1.7790 L12: -0.2232 REMARK 3 L13: -0.6517 L23: 0.1037 REMARK 3 S TENSOR REMARK 3 S11: -0.0845 S12: 0.0102 S13: -0.0753 REMARK 3 S21: -0.0215 S22: -0.0086 S23: 0.1844 REMARK 3 S31: 0.2004 S32: -0.2168 S33: 0.0658 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 172 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.6227 -12.0292 30.0671 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.3780 REMARK 3 T33: 0.2712 T12: 0.0130 REMARK 3 T13: 0.0880 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 0.7183 L22: 4.2987 REMARK 3 L33: 3.7183 L12: 1.4779 REMARK 3 L13: -1.1871 L23: -0.9986 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: -0.3508 S13: 0.1700 REMARK 3 S21: 0.1882 S22: 0.1728 S23: 0.6838 REMARK 3 S31: -0.4198 S32: -0.3390 S33: -0.2180 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 194 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.0086 -25.6134 26.1934 REMARK 3 T TENSOR REMARK 3 T11: 0.1229 T22: 0.1482 REMARK 3 T33: 0.1193 T12: -0.0364 REMARK 3 T13: 0.0732 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.1192 L22: 1.1106 REMARK 3 L33: 1.3123 L12: 0.2223 REMARK 3 L13: 0.1266 L23: 0.3600 REMARK 3 S TENSOR REMARK 3 S11: -0.0950 S12: -0.1292 S13: -0.0327 REMARK 3 S21: 0.1055 S22: -0.0021 S23: 0.1876 REMARK 3 S31: 0.2102 S32: -0.2359 S33: 0.0721 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 250 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6664 -6.8600 21.9872 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.1971 REMARK 3 T33: 0.1757 T12: 0.0066 REMARK 3 T13: -0.0009 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 3.8824 L22: 4.3987 REMARK 3 L33: 0.5884 L12: 2.3952 REMARK 3 L13: -0.2079 L23: 0.3228 REMARK 3 S TENSOR REMARK 3 S11: -0.1751 S12: 0.2724 S13: 0.2117 REMARK 3 S21: -0.2254 S22: 0.1695 S23: -0.1069 REMARK 3 S31: -0.0443 S32: -0.0145 S33: 0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6224 13.2534 27.1174 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.1124 REMARK 3 T33: 0.1501 T12: 0.0480 REMARK 3 T13: -0.0563 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 0.8479 L22: 0.4167 REMARK 3 L33: 1.0002 L12: 0.1154 REMARK 3 L13: 0.5353 L23: 0.1704 REMARK 3 S TENSOR REMARK 3 S11: -0.1359 S12: -0.1660 S13: 0.1890 REMARK 3 S21: 0.0062 S22: -0.0537 S23: -0.0005 REMARK 3 S31: -0.2819 S32: -0.2179 S33: 0.0934 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5417 1.2374 12.5357 REMARK 3 T TENSOR REMARK 3 T11: 0.0778 T22: 0.0678 REMARK 3 T33: 0.0901 T12: -0.0018 REMARK 3 T13: -0.0285 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.5949 L22: 0.5947 REMARK 3 L33: 1.9028 L12: -0.1776 REMARK 3 L13: -0.1270 L23: 0.2296 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: -0.0080 S13: -0.0335 REMARK 3 S21: 0.0297 S22: -0.0304 S23: 0.0183 REMARK 3 S31: 0.0274 S32: -0.0621 S33: 0.0729 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5073 10.7825 10.8273 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: 0.0727 REMARK 3 T33: 0.1050 T12: -0.0204 REMARK 3 T13: -0.0451 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.6849 L22: 0.6271 REMARK 3 L33: 1.5281 L12: -0.2533 REMARK 3 L13: 0.9592 L23: -0.0555 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: 0.0658 S13: 0.0720 REMARK 3 S21: -0.0582 S22: -0.0513 S23: -0.0827 REMARK 3 S31: -0.1718 S32: 0.1451 S33: 0.1116 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1198 0.6650 19.3331 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.2367 REMARK 3 T33: 0.1700 T12: 0.0090 REMARK 3 T13: 0.0319 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.2911 L22: 8.3654 REMARK 3 L33: 0.9628 L12: 0.6441 REMARK 3 L13: 0.8057 L23: -2.1313 REMARK 3 S TENSOR REMARK 3 S11: -0.1098 S12: 0.3020 S13: -0.0674 REMARK 3 S21: -0.6583 S22: -0.1141 S23: -0.1760 REMARK 3 S31: 0.1245 S32: 0.1431 S33: 0.2853 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2294 9.0430 21.6209 REMARK 3 T TENSOR REMARK 3 T11: 0.0829 T22: 0.1315 REMARK 3 T33: 0.1130 T12: 0.0342 REMARK 3 T13: -0.0380 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: 0.4429 L22: 0.9316 REMARK 3 L33: 0.8987 L12: -0.1954 REMARK 3 L13: 0.0317 L23: -0.1138 REMARK 3 S TENSOR REMARK 3 S11: -0.1195 S12: -0.0364 S13: 0.0318 REMARK 3 S21: 0.0398 S22: -0.0277 S23: 0.1482 REMARK 3 S31: -0.2300 S32: -0.2017 S33: 0.0669 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7801 -39.7579 -22.3111 REMARK 3 T TENSOR REMARK 3 T11: 0.2284 T22: 0.0965 REMARK 3 T33: 0.1785 T12: -0.0076 REMARK 3 T13: 0.0271 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 1.0266 L22: 2.5655 REMARK 3 L33: 6.2220 L12: 0.3091 REMARK 3 L13: -1.0341 L23: -2.0955 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: 0.1337 S13: -0.2285 REMARK 3 S21: -0.4255 S22: 0.0018 S23: -0.1227 REMARK 3 S31: 0.6083 S32: 0.0769 S33: 0.0147 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 29 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.1891 -23.7579 -26.3474 REMARK 3 T TENSOR REMARK 3 T11: 0.2154 T22: 0.1728 REMARK 3 T33: 0.1498 T12: 0.0120 REMARK 3 T13: -0.0744 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 5.0436 L22: 1.8976 REMARK 3 L33: 3.4680 L12: -1.6136 REMARK 3 L13: -3.8113 L23: 1.4474 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: 0.5022 S13: -0.1890 REMARK 3 S21: -0.3991 S22: -0.1868 S23: 0.3862 REMARK 3 S31: 0.1286 S32: -0.4429 S33: 0.1711 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 54 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5329 -19.6749 -10.0545 REMARK 3 T TENSOR REMARK 3 T11: 0.0981 T22: 0.0649 REMARK 3 T33: 0.1002 T12: -0.0212 REMARK 3 T13: 0.0133 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.9997 L22: 0.8321 REMARK 3 L33: 1.7125 L12: -0.0525 REMARK 3 L13: 0.4424 L23: 0.3577 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: 0.0603 S13: 0.0635 REMARK 3 S21: -0.0978 S22: -0.0165 S23: 0.0537 REMARK 3 S31: -0.1140 S32: 0.0285 S33: 0.0124 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 122 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1969 -30.2753 -1.8841 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.0727 REMARK 3 T33: 0.0793 T12: -0.0166 REMARK 3 T13: 0.0184 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 5.0256 L22: 1.3284 REMARK 3 L33: 1.8981 L12: -0.1551 REMARK 3 L13: -0.3048 L23: -0.1560 REMARK 3 S TENSOR REMARK 3 S11: -0.1373 S12: -0.1105 S13: -0.0555 REMARK 3 S21: 0.0945 S22: 0.0146 S23: -0.0780 REMARK 3 S31: 0.1269 S32: 0.1823 S33: 0.1089 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 160 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1797 -23.1315 -20.9289 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1811 REMARK 3 T33: 0.1007 T12: 0.0126 REMARK 3 T13: 0.0456 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.0178 L22: 1.4575 REMARK 3 L33: 0.4788 L12: 0.8892 REMARK 3 L13: -0.5115 L23: -0.7029 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: -0.0508 S13: -0.0590 REMARK 3 S21: -0.1880 S22: -0.0983 S23: -0.2065 REMARK 3 S31: 0.0778 S32: 0.1590 S33: 0.0981 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 203 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7961 -32.6934 -18.2116 REMARK 3 T TENSOR REMARK 3 T11: 0.1372 T22: 0.0710 REMARK 3 T33: 0.0955 T12: -0.0044 REMARK 3 T13: 0.0155 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.9682 L22: 1.3031 REMARK 3 L33: 1.5274 L12: 0.0008 REMARK 3 L13: 0.4176 L23: -0.5224 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.1011 S13: -0.0503 REMARK 3 S21: -0.1461 S22: -0.0399 S23: 0.0557 REMARK 3 S31: 0.1738 S32: 0.0749 S33: 0.0203 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 250 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.1569 -14.6917 -18.1765 REMARK 3 T TENSOR REMARK 3 T11: 0.1042 T22: 0.3918 REMARK 3 T33: 0.5938 T12: -0.0067 REMARK 3 T13: -0.0406 T23: 0.0833 REMARK 3 L TENSOR REMARK 3 L11: 1.3181 L22: 0.7008 REMARK 3 L33: 0.9267 L12: -0.8733 REMARK 3 L13: 1.0313 L23: -0.8063 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.0053 S13: -0.4004 REMARK 3 S21: 0.0366 S22: 0.2231 S23: 0.9238 REMARK 3 S31: -0.0894 S32: -0.3792 S33: -0.1016 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5747 5.0070 -29.5269 REMARK 3 T TENSOR REMARK 3 T11: 0.1309 T22: 0.1304 REMARK 3 T33: 0.0906 T12: -0.0107 REMARK 3 T13: -0.0191 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 0.7075 L22: 0.9829 REMARK 3 L33: 1.2359 L12: 0.1826 REMARK 3 L13: 0.6265 L23: 0.2100 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: 0.2651 S13: 0.0730 REMARK 3 S21: -0.1467 S22: -0.0464 S23: 0.1039 REMARK 3 S31: -0.1759 S32: 0.0682 S33: 0.0564 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 54 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.9835 -2.5860 -12.0238 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.0964 REMARK 3 T33: 0.0982 T12: 0.0078 REMARK 3 T13: -0.0299 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.4252 L22: 0.5387 REMARK 3 L33: 1.4352 L12: -0.1058 REMARK 3 L13: -0.2594 L23: 0.0646 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: 0.0237 S13: -0.0376 REMARK 3 S21: -0.0324 S22: -0.0455 S23: 0.0270 REMARK 3 S31: 0.0664 S32: -0.0310 S33: 0.0520 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 122 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.4427 6.6488 -12.9983 REMARK 3 T TENSOR REMARK 3 T11: 0.1149 T22: 0.1016 REMARK 3 T33: 0.1010 T12: 0.0318 REMARK 3 T13: -0.0378 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.7796 L22: 0.7289 REMARK 3 L33: 1.4132 L12: 0.4409 REMARK 3 L13: 1.0452 L23: 0.1514 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: 0.0283 S13: 0.0767 REMARK 3 S21: 0.0124 S22: -0.0385 S23: 0.0794 REMARK 3 S31: -0.1560 S32: -0.1163 S33: 0.0901 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 185 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.2530 1.8677 -17.2459 REMARK 3 T TENSOR REMARK 3 T11: 0.1536 T22: 0.2370 REMARK 3 T33: 0.1182 T12: 0.0358 REMARK 3 T13: -0.0022 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 2.5833 L22: 4.6447 REMARK 3 L33: 1.2439 L12: 1.6031 REMARK 3 L13: 1.3774 L23: 1.3537 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: -0.0990 S13: -0.0053 REMARK 3 S21: 0.0135 S22: -0.0996 S23: 0.4283 REMARK 3 S31: -0.0406 S32: -0.3229 S33: 0.1081 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 217 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0759 0.0117 -25.1810 REMARK 3 T TENSOR REMARK 3 T11: 0.0900 T22: 0.1141 REMARK 3 T33: 0.0776 T12: -0.0082 REMARK 3 T13: 0.0047 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.1499 L22: 0.7052 REMARK 3 L33: 0.2354 L12: -0.6423 REMARK 3 L13: -0.2187 L23: 0.1315 REMARK 3 S TENSOR REMARK 3 S11: -0.0965 S12: 0.0837 S13: 0.0633 REMARK 3 S21: -0.1577 S22: 0.0505 S23: -0.1046 REMARK 3 S31: -0.0866 S32: 0.0570 S33: 0.0238 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 1 through 64 or REMARK 3 resid 66 through 108 or resid 110 through REMARK 3 113 or resid 115 through 149 or resid 151 REMARK 3 through 161 or resid 163 through 200 or REMARK 3 resid 202 through 213 or resid 215 REMARK 3 through 266 or resid 301 through 401)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 1 through 64 or REMARK 3 resid 66 through 108 or resid 110 through REMARK 3 113 or resid 115 through 149 or resid 151 REMARK 3 through 161 or resid 163 through 200 or REMARK 3 resid 202 through 213 or resid 215 REMARK 3 through 266 or resid 301 through 401)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 1 through 64 or REMARK 3 resid 66 through 108 or resid 110 through REMARK 3 113 or resid 115 through 149 or resid 151 REMARK 3 through 161 or resid 163 through 200 or REMARK 3 resid 202 through 213 or resid 215 REMARK 3 through 266 or resid 301 through 401)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 1 through 64 or REMARK 3 resid 66 through 108 or resid 110 through REMARK 3 113 or resid 115 through 149 or resid 151 REMARK 3 through 161 or resid 163 through 200 or REMARK 3 resid 202 through 213 or resid 215 REMARK 3 through 266 or resid 301 through 401)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PLJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292117725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 757195 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 93.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BMM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M POTASSIUM PHOSPHATE, 2% PEG REMARK 280 8000, 8% GLYCEROL, VAPOR DIFFUSION, TEMPERATURE 296.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.92550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.57200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.92550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 68.57200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 31 CD REMARK 480 GLU C 45 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 122 165.38 67.72 REMARK 500 SER A 123 -166.75 -168.34 REMARK 500 LEU A 129 -88.56 -118.99 REMARK 500 ASP A 257 42.16 -107.97 REMARK 500 LYS B 92 -169.37 -110.22 REMARK 500 ARG B 122 164.05 68.95 REMARK 500 SER B 123 -167.20 -168.63 REMARK 500 LEU B 129 -88.44 -118.09 REMARK 500 ASP B 257 40.08 -108.30 REMARK 500 ARG C 122 163.46 69.14 REMARK 500 SER C 123 -167.87 -168.32 REMARK 500 LEU C 129 -89.97 -120.10 REMARK 500 ARG D 122 165.26 68.31 REMARK 500 SER D 123 -166.26 -167.35 REMARK 500 LEU D 129 -86.71 -117.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 65 0.15 SIDE CHAIN REMARK 500 ARG A 122 0.09 SIDE CHAIN REMARK 500 ARG B 122 0.08 SIDE CHAIN REMARK 500 ARG C 122 0.09 SIDE CHAIN REMARK 500 ARG D 122 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 724 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 725 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH B 702 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 703 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B 704 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH C 701 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH C 702 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH D 725 DISTANCE = 6.60 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 ADP D 304 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 66 OD1 REMARK 620 2 ATP A 301 O1G 94.7 REMARK 620 3 ATP A 301 O2B 90.6 89.1 REMARK 620 4 ATP A 302 O1G 88.5 93.4 177.5 REMARK 620 5 ATP A 302 O2B 173.6 87.5 95.4 85.4 REMARK 620 6 ATP A 302 O2A 90.9 173.6 87.8 89.8 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 66 OD1 REMARK 620 2 ATP B 301 O1G 93.7 REMARK 620 3 ATP B 301 O2B 91.4 91.8 REMARK 620 4 ATP B 302 O3G 87.3 95.5 172.7 REMARK 620 5 ATP B 302 O2B 170.9 87.1 97.6 83.6 REMARK 620 6 ATP B 302 O2A 93.1 172.4 84.9 88.0 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 308 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 66 OD1 REMARK 620 2 ATP C 301 O3G 94.7 REMARK 620 3 ATP C 301 O2B 91.4 86.8 REMARK 620 4 ATP C 302 O2G 89.0 99.0 174.1 REMARK 620 5 ATP C 302 O1B 176.0 86.3 92.5 87.0 REMARK 620 6 ATP C 302 O2A 92.0 169.3 84.7 89.4 87.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 66 OD1 REMARK 620 2 ATP D 301 O1G 93.4 REMARK 620 3 ATP D 301 O1B 90.9 90.2 REMARK 620 4 ATP D 302 O2G 89.2 91.2 178.6 REMARK 620 5 ATP D 302 O2B 172.9 84.4 95.9 84.1 REMARK 620 6 ATP D 302 O2A 93.8 172.6 88.4 90.2 88.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7NMJ RELATED DB: PDB REMARK 900 ADP-BOUND REMARK 900 RELATED ID: 7BMM RELATED DB: PDB REMARK 900 APO FORM DBREF 7PLJ A 1 266 UNP Q9RY20 Q9RY20_DEIRA 1 266 DBREF 7PLJ B 1 266 UNP Q9RY20 Q9RY20_DEIRA 1 266 DBREF 7PLJ C 1 266 UNP Q9RY20 Q9RY20_DEIRA 1 266 DBREF 7PLJ D 1 266 UNP Q9RY20 Q9RY20_DEIRA 1 266 SEQRES 1 A 266 MET ASP ILE ASP ASN TYR ARG VAL LYS PRO GLY LYS ARG SEQRES 2 A 266 VAL LYS LEU SER ASP TRP ALA THR ASN ASP ASP ALA GLY SEQRES 3 A 266 LEU SER LYS GLU GLU GLY GLN ALA GLN THR ALA LYS LEU SEQRES 4 A 266 ALA GLY GLU LEU ALA GLU TRP GLN GLU ARG LEU TYR ALA SEQRES 5 A 266 GLU GLY LYS GLN SER LEU LEU LEU ILE LEU GLN ALA ARG SEQRES 6 A 266 ASP ALA ALA GLY LYS ASP GLY ALA VAL LYS LYS VAL ILE SEQRES 7 A 266 GLY ALA PHE ASN PRO ALA GLY VAL GLN ILE THR SER PHE SEQRES 8 A 266 LYS GLN PRO SER ALA GLU GLU LEU SER HIS ASP PHE LEU SEQRES 9 A 266 TRP ARG ILE HIS GLN LYS ALA PRO ALA LYS GLY TYR VAL SEQRES 10 A 266 GLY VAL PHE ASN ARG SER GLN TYR GLU ASP VAL LEU VAL SEQRES 11 A 266 THR ARG VAL TYR ASP MET ILE ASP ASP LYS THR ALA LYS SEQRES 12 A 266 ARG ARG LEU GLU HIS ILE ARG HIS PHE GLU GLU LEU LEU SEQRES 13 A 266 THR ASP ASN ALA THR ARG ILE VAL LYS VAL TYR LEU HIS SEQRES 14 A 266 ILE SER PRO GLU GLU GLN LYS GLU ARG LEU GLN ALA ARG SEQRES 15 A 266 LEU ASP ASN PRO GLY LYS HIS TRP LYS PHE ASN PRO GLY SEQRES 16 A 266 ASP LEU LYS ASP ARG SER ASN TRP ASP LYS PHE ASN ASP SEQRES 17 A 266 VAL TYR GLU ASP ALA LEU THR THR SER THR ASP ASP ALA SEQRES 18 A 266 PRO TRP TYR VAL VAL PRO ALA ASP ARG LYS TRP TYR ARG SEQRES 19 A 266 ASP LEU VAL LEU SER HIS ILE LEU LEU GLY ALA LEU LYS SEQRES 20 A 266 ASP MET ASN PRO GLN PHE PRO ALA ILE ASP TYR ASP PRO SEQRES 21 A 266 SER LYS VAL VAL ILE HIS SEQRES 1 B 266 MET ASP ILE ASP ASN TYR ARG VAL LYS PRO GLY LYS ARG SEQRES 2 B 266 VAL LYS LEU SER ASP TRP ALA THR ASN ASP ASP ALA GLY SEQRES 3 B 266 LEU SER LYS GLU GLU GLY GLN ALA GLN THR ALA LYS LEU SEQRES 4 B 266 ALA GLY GLU LEU ALA GLU TRP GLN GLU ARG LEU TYR ALA SEQRES 5 B 266 GLU GLY LYS GLN SER LEU LEU LEU ILE LEU GLN ALA ARG SEQRES 6 B 266 ASP ALA ALA GLY LYS ASP GLY ALA VAL LYS LYS VAL ILE SEQRES 7 B 266 GLY ALA PHE ASN PRO ALA GLY VAL GLN ILE THR SER PHE SEQRES 8 B 266 LYS GLN PRO SER ALA GLU GLU LEU SER HIS ASP PHE LEU SEQRES 9 B 266 TRP ARG ILE HIS GLN LYS ALA PRO ALA LYS GLY TYR VAL SEQRES 10 B 266 GLY VAL PHE ASN ARG SER GLN TYR GLU ASP VAL LEU VAL SEQRES 11 B 266 THR ARG VAL TYR ASP MET ILE ASP ASP LYS THR ALA LYS SEQRES 12 B 266 ARG ARG LEU GLU HIS ILE ARG HIS PHE GLU GLU LEU LEU SEQRES 13 B 266 THR ASP ASN ALA THR ARG ILE VAL LYS VAL TYR LEU HIS SEQRES 14 B 266 ILE SER PRO GLU GLU GLN LYS GLU ARG LEU GLN ALA ARG SEQRES 15 B 266 LEU ASP ASN PRO GLY LYS HIS TRP LYS PHE ASN PRO GLY SEQRES 16 B 266 ASP LEU LYS ASP ARG SER ASN TRP ASP LYS PHE ASN ASP SEQRES 17 B 266 VAL TYR GLU ASP ALA LEU THR THR SER THR ASP ASP ALA SEQRES 18 B 266 PRO TRP TYR VAL VAL PRO ALA ASP ARG LYS TRP TYR ARG SEQRES 19 B 266 ASP LEU VAL LEU SER HIS ILE LEU LEU GLY ALA LEU LYS SEQRES 20 B 266 ASP MET ASN PRO GLN PHE PRO ALA ILE ASP TYR ASP PRO SEQRES 21 B 266 SER LYS VAL VAL ILE HIS SEQRES 1 C 266 MET ASP ILE ASP ASN TYR ARG VAL LYS PRO GLY LYS ARG SEQRES 2 C 266 VAL LYS LEU SER ASP TRP ALA THR ASN ASP ASP ALA GLY SEQRES 3 C 266 LEU SER LYS GLU GLU GLY GLN ALA GLN THR ALA LYS LEU SEQRES 4 C 266 ALA GLY GLU LEU ALA GLU TRP GLN GLU ARG LEU TYR ALA SEQRES 5 C 266 GLU GLY LYS GLN SER LEU LEU LEU ILE LEU GLN ALA ARG SEQRES 6 C 266 ASP ALA ALA GLY LYS ASP GLY ALA VAL LYS LYS VAL ILE SEQRES 7 C 266 GLY ALA PHE ASN PRO ALA GLY VAL GLN ILE THR SER PHE SEQRES 8 C 266 LYS GLN PRO SER ALA GLU GLU LEU SER HIS ASP PHE LEU SEQRES 9 C 266 TRP ARG ILE HIS GLN LYS ALA PRO ALA LYS GLY TYR VAL SEQRES 10 C 266 GLY VAL PHE ASN ARG SER GLN TYR GLU ASP VAL LEU VAL SEQRES 11 C 266 THR ARG VAL TYR ASP MET ILE ASP ASP LYS THR ALA LYS SEQRES 12 C 266 ARG ARG LEU GLU HIS ILE ARG HIS PHE GLU GLU LEU LEU SEQRES 13 C 266 THR ASP ASN ALA THR ARG ILE VAL LYS VAL TYR LEU HIS SEQRES 14 C 266 ILE SER PRO GLU GLU GLN LYS GLU ARG LEU GLN ALA ARG SEQRES 15 C 266 LEU ASP ASN PRO GLY LYS HIS TRP LYS PHE ASN PRO GLY SEQRES 16 C 266 ASP LEU LYS ASP ARG SER ASN TRP ASP LYS PHE ASN ASP SEQRES 17 C 266 VAL TYR GLU ASP ALA LEU THR THR SER THR ASP ASP ALA SEQRES 18 C 266 PRO TRP TYR VAL VAL PRO ALA ASP ARG LYS TRP TYR ARG SEQRES 19 C 266 ASP LEU VAL LEU SER HIS ILE LEU LEU GLY ALA LEU LYS SEQRES 20 C 266 ASP MET ASN PRO GLN PHE PRO ALA ILE ASP TYR ASP PRO SEQRES 21 C 266 SER LYS VAL VAL ILE HIS SEQRES 1 D 266 MET ASP ILE ASP ASN TYR ARG VAL LYS PRO GLY LYS ARG SEQRES 2 D 266 VAL LYS LEU SER ASP TRP ALA THR ASN ASP ASP ALA GLY SEQRES 3 D 266 LEU SER LYS GLU GLU GLY GLN ALA GLN THR ALA LYS LEU SEQRES 4 D 266 ALA GLY GLU LEU ALA GLU TRP GLN GLU ARG LEU TYR ALA SEQRES 5 D 266 GLU GLY LYS GLN SER LEU LEU LEU ILE LEU GLN ALA ARG SEQRES 6 D 266 ASP ALA ALA GLY LYS ASP GLY ALA VAL LYS LYS VAL ILE SEQRES 7 D 266 GLY ALA PHE ASN PRO ALA GLY VAL GLN ILE THR SER PHE SEQRES 8 D 266 LYS GLN PRO SER ALA GLU GLU LEU SER HIS ASP PHE LEU SEQRES 9 D 266 TRP ARG ILE HIS GLN LYS ALA PRO ALA LYS GLY TYR VAL SEQRES 10 D 266 GLY VAL PHE ASN ARG SER GLN TYR GLU ASP VAL LEU VAL SEQRES 11 D 266 THR ARG VAL TYR ASP MET ILE ASP ASP LYS THR ALA LYS SEQRES 12 D 266 ARG ARG LEU GLU HIS ILE ARG HIS PHE GLU GLU LEU LEU SEQRES 13 D 266 THR ASP ASN ALA THR ARG ILE VAL LYS VAL TYR LEU HIS SEQRES 14 D 266 ILE SER PRO GLU GLU GLN LYS GLU ARG LEU GLN ALA ARG SEQRES 15 D 266 LEU ASP ASN PRO GLY LYS HIS TRP LYS PHE ASN PRO GLY SEQRES 16 D 266 ASP LEU LYS ASP ARG SER ASN TRP ASP LYS PHE ASN ASP SEQRES 17 D 266 VAL TYR GLU ASP ALA LEU THR THR SER THR ASP ASP ALA SEQRES 18 D 266 PRO TRP TYR VAL VAL PRO ALA ASP ARG LYS TRP TYR ARG SEQRES 19 D 266 ASP LEU VAL LEU SER HIS ILE LEU LEU GLY ALA LEU LYS SEQRES 20 D 266 ASP MET ASN PRO GLN PHE PRO ALA ILE ASP TYR ASP PRO SEQRES 21 D 266 SER LYS VAL VAL ILE HIS HET ATP A 301 31 HET ATP A 302 31 HET ADP A 303 27 HET 3PO A 304 13 HET 7TT A 305 17 HET GOL A 306 6 HET MG A 307 1 HET ATP B 301 31 HET ATP B 302 31 HET GOL B 303 6 HET PEG B 304 7 HET PPV B 305 9 HET GOL B 306 6 HET MG B 307 1 HET ATP C 301 31 HET ATP C 302 31 HET PPV C 303 9 HET PPV C 304 9 HET PEG C 305 7 HET GOL C 306 6 HET PEG C 307 14 HET MG C 308 1 HET ATP D 301 31 HET ATP D 302 31 HET GOL D 303 6 HET ADP D 304 27 HET PEG D 305 14 HET GOL D 306 6 HET PEG D 307 14 HET PO4 D 308 5 HET MG D 309 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM 3PO TRIPHOSPHATE HETNAM 7TT TETRAPHOSPHATE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PPV PYROPHOSPHATE HETNAM PO4 PHOSPHATE ION HETSYN 7TT [OXIDANYL(PHOSPHONOOXY)PHOSPHORYL] PHOSPHONO HYDROGEN HETSYN 2 7TT PHOSPHATE; [OXIDO-[OXIDO(PHOSPHONATOOXY) HETSYN 3 7TT PHOSPHORYL]OXYPHOSPHORYL] PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ATP 8(C10 H16 N5 O13 P3) FORMUL 7 ADP 2(C10 H15 N5 O10 P2) FORMUL 8 3PO H5 O10 P3 FORMUL 9 7TT H6 O13 P4 FORMUL 10 GOL 6(C3 H8 O3) FORMUL 11 MG 4(MG 2+) FORMUL 15 PEG 5(C4 H10 O3) FORMUL 16 PPV 3(H4 O7 P2) FORMUL 34 PO4 O4 P 3- FORMUL 36 HOH *1256(H2 O) HELIX 1 AA1 ASP A 2 ARG A 7 5 6 HELIX 2 AA2 LYS A 15 TRP A 19 5 5 HELIX 3 AA3 SER A 28 GLY A 54 1 27 HELIX 4 AA4 GLY A 69 VAL A 77 1 9 HELIX 5 AA5 ILE A 78 PHE A 81 5 4 HELIX 6 AA6 ASN A 82 ALA A 84 5 3 HELIX 7 AA7 SER A 95 SER A 100 1 6 HELIX 8 AA8 LEU A 104 LYS A 110 1 7 HELIX 9 AA9 SER A 123 VAL A 128 5 6 HELIX 10 AB1 LEU A 129 TYR A 134 1 6 HELIX 11 AB2 ASP A 138 ASN A 159 1 22 HELIX 12 AB3 SER A 171 ASN A 185 1 15 HELIX 13 AB4 LYS A 188 PHE A 192 5 5 HELIX 14 AB5 ASN A 193 ASN A 202 1 10 HELIX 15 AB6 ASN A 202 THR A 215 1 14 HELIX 16 AB7 ARG A 230 ASN A 250 1 21 HELIX 17 AB8 ASP A 259 VAL A 263 5 5 HELIX 18 AB9 ASP B 2 ARG B 7 5 6 HELIX 19 AC1 LYS B 15 TRP B 19 5 5 HELIX 20 AC2 SER B 28 GLY B 54 1 27 HELIX 21 AC3 GLY B 69 VAL B 77 1 9 HELIX 22 AC4 ILE B 78 PHE B 81 5 4 HELIX 23 AC5 ASN B 82 ALA B 84 5 3 HELIX 24 AC6 SER B 95 SER B 100 1 6 HELIX 25 AC7 LEU B 104 LYS B 110 1 7 HELIX 26 AC8 SER B 123 VAL B 128 5 6 HELIX 27 AC9 LEU B 129 TYR B 134 1 6 HELIX 28 AD1 ASP B 138 ASN B 159 1 22 HELIX 29 AD2 SER B 171 ASN B 185 1 15 HELIX 30 AD3 PRO B 186 ASN B 193 5 8 HELIX 31 AD4 PRO B 194 ASN B 202 1 9 HELIX 32 AD5 ASN B 202 THR B 215 1 14 HELIX 33 AD6 ARG B 230 ASN B 250 1 21 HELIX 34 AD7 ASP B 259 VAL B 263 5 5 HELIX 35 AD8 ASP C 2 ARG C 7 5 6 HELIX 36 AD9 LYS C 15 TRP C 19 5 5 HELIX 37 AE1 SER C 28 GLY C 54 1 27 HELIX 38 AE2 GLY C 69 VAL C 77 1 9 HELIX 39 AE3 ILE C 78 PHE C 81 5 4 HELIX 40 AE4 ASN C 82 ALA C 84 5 3 HELIX 41 AE5 SER C 95 SER C 100 1 6 HELIX 42 AE6 LEU C 104 LYS C 110 1 7 HELIX 43 AE7 SER C 123 VAL C 128 5 6 HELIX 44 AE8 LEU C 129 TYR C 134 1 6 HELIX 45 AE9 ASP C 138 ASN C 159 1 22 HELIX 46 AF1 SER C 171 ASN C 185 1 15 HELIX 47 AF2 PRO C 186 PHE C 192 5 7 HELIX 48 AF3 ASN C 193 ASP C 196 5 4 HELIX 49 AF4 LEU C 197 ASN C 202 1 6 HELIX 50 AF5 ASN C 202 LEU C 214 1 13 HELIX 51 AF6 THR C 215 SER C 217 5 3 HELIX 52 AF7 ARG C 230 ASN C 250 1 21 HELIX 53 AF8 ASP C 259 VAL C 263 5 5 HELIX 54 AF9 ASP D 2 ARG D 7 5 6 HELIX 55 AG1 LYS D 15 TRP D 19 5 5 HELIX 56 AG2 SER D 28 GLY D 54 1 27 HELIX 57 AG3 GLY D 69 VAL D 77 1 9 HELIX 58 AG4 ILE D 78 PHE D 81 5 4 HELIX 59 AG5 ASN D 82 ALA D 84 5 3 HELIX 60 AG6 SER D 95 SER D 100 1 6 HELIX 61 AG7 LEU D 104 LYS D 110 1 7 HELIX 62 AG8 SER D 123 VAL D 128 5 6 HELIX 63 AG9 LEU D 129 TYR D 134 1 6 HELIX 64 AH1 ASP D 138 ASN D 159 1 22 HELIX 65 AH2 SER D 171 ASN D 185 1 15 HELIX 66 AH3 LYS D 188 PHE D 192 5 5 HELIX 67 AH4 ASN D 193 ASN D 202 1 10 HELIX 68 AH5 ASN D 202 THR D 215 1 14 HELIX 69 AH6 ARG D 230 ASN D 250 1 21 HELIX 70 AH7 ASP D 259 VAL D 263 5 5 SHEET 1 AA1 5 VAL A 86 SER A 90 0 SHEET 2 AA1 5 VAL A 117 ASN A 121 1 O ASN A 121 N THR A 89 SHEET 3 AA1 5 SER A 57 GLN A 63 1 N LEU A 58 O GLY A 118 SHEET 4 AA1 5 THR A 161 HIS A 169 1 O ARG A 162 N LEU A 59 SHEET 5 AA1 5 TRP A 223 PRO A 227 1 O TYR A 224 N TYR A 167 SHEET 1 AA2 5 VAL B 86 SER B 90 0 SHEET 2 AA2 5 VAL B 117 ASN B 121 1 O ASN B 121 N THR B 89 SHEET 3 AA2 5 SER B 57 GLN B 63 1 N LEU B 58 O GLY B 118 SHEET 4 AA2 5 THR B 161 HIS B 169 1 O ARG B 162 N LEU B 59 SHEET 5 AA2 5 TRP B 223 PRO B 227 1 O TYR B 224 N TYR B 167 SHEET 1 AA3 5 VAL C 86 SER C 90 0 SHEET 2 AA3 5 VAL C 117 ASN C 121 1 O ASN C 121 N THR C 89 SHEET 3 AA3 5 SER C 57 GLN C 63 1 N LEU C 58 O GLY C 118 SHEET 4 AA3 5 THR C 161 HIS C 169 1 O ARG C 162 N LEU C 59 SHEET 5 AA3 5 TRP C 223 PRO C 227 1 O TYR C 224 N TYR C 167 SHEET 1 AA4 5 VAL D 86 SER D 90 0 SHEET 2 AA4 5 VAL D 117 ASN D 121 1 O VAL D 119 N THR D 89 SHEET 3 AA4 5 SER D 57 GLN D 63 1 N LEU D 58 O GLY D 118 SHEET 4 AA4 5 THR D 161 HIS D 169 1 O VAL D 166 N ILE D 61 SHEET 5 AA4 5 TRP D 223 PRO D 227 1 O TYR D 224 N TYR D 167 LINK OD1 ASP A 66 MG MG A 307 1555 1555 2.08 LINK O1G ATP A 301 MG MG A 307 1555 1555 2.14 LINK O2B ATP A 301 MG MG A 307 1555 1555 1.98 LINK O1G ATP A 302 MG MG A 307 1555 1555 2.09 LINK O2B ATP A 302 MG MG A 307 1555 1555 2.16 LINK O2A ATP A 302 MG MG A 307 1555 1555 2.09 LINK OD1 ASP B 66 MG MG B 307 1555 1555 2.09 LINK O1G ATP B 301 MG MG B 307 1555 1555 2.05 LINK O2B ATP B 301 MG MG B 307 1555 1555 2.06 LINK O3G ATP B 302 MG MG B 307 1555 1555 2.03 LINK O2B ATP B 302 MG MG B 307 1555 1555 2.16 LINK O2A ATP B 302 MG MG B 307 1555 1555 2.03 LINK OD1 ASP C 66 MG MG C 308 1555 1555 2.12 LINK O3G ATP C 301 MG MG C 308 1555 1555 2.07 LINK O2B ATP C 301 MG MG C 308 1555 1555 2.06 LINK O2G ATP C 302 MG MG C 308 1555 1555 2.06 LINK O1B ATP C 302 MG MG C 308 1555 1555 2.22 LINK O2A ATP C 302 MG MG C 308 1555 1555 2.13 LINK OD1 ASP D 66 MG MG D 309 1555 1555 2.05 LINK O1G ATP D 301 MG MG D 309 1555 1555 2.19 LINK O1B ATP D 301 MG MG D 309 1555 1555 2.01 LINK O2G ATP D 302 MG MG D 309 1555 1555 2.10 LINK O2B ATP D 302 MG MG D 309 1555 1555 2.09 LINK O2A ATP D 302 MG MG D 309 1555 1555 2.00 CRYST1 143.851 137.144 85.024 90.00 116.90 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006952 0.000000 0.003526 0.00000 SCALE2 0.000000 0.007292 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013188 0.00000 MTRIX1 1 -0.992246 0.021173 0.122477 -66.60067 1 MTRIX2 1 0.013697 -0.960757 0.277054 -18.08961 1 MTRIX3 1 0.123536 0.276583 0.953017 6.82661 1 MTRIX1 2 0.987779 0.052532 -0.146743 0.46381 1 MTRIX2 2 0.050345 -0.998559 -0.018583 -16.75562 1 MTRIX3 2 -0.147508 0.010968 -0.989000 -2.20752 1 MTRIX1 3 -0.997631 -0.068070 0.009960 -67.51507 1 MTRIX2 3 -0.068138 0.957718 -0.279525 -2.27521 1 MTRIX3 3 0.009488 -0.279541 -0.960087 0.52378 1