HEADER CELL INVASION 31-AUG-21 7PLL TITLE STRUCTURE OF THE MURINE CORTACTIN C-SH3 DOMAIN IN COMPLEX WITH A PYK2 TITLE 2 PROLINE-RICH LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: SRC SUBSTRATE CORTACTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN, UNP RESIDUES 490-546; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: MURINE SEQUENCE OF CORTACTIN SH3 DOMAIN; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PYK2-PRR2 PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CTTN, EMS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS SH3 DOMAIN, CORTACTIN, PYK2, SIGNALING, CANCER, CELL INVASION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.G.SOKOLIK,A.O.SAMSON,H.GIL-HENN,J.H.CHILL REVDAT 4 14-JUN-23 7PLL 1 REMARK REVDAT 3 01-FEB-23 7PLL 1 JRNL REVDAT 2 02-NOV-22 7PLL 1 JRNL REVDAT 1 13-JUL-22 7PLL 0 JRNL AUTH S.TWAFRA,C.G.SOKOLIK,T.SNEH,K.D.SRIKANTH,T.MEIRSON,A.GENNA, JRNL AUTH 2 J.H.CHILL,H.GIL-HENN JRNL TITL A NOVEL PYK2-DERIVED PEPTIDE INHIBITS INVADOPODIA-MEDIATED JRNL TITL 2 BREAST CANCER METASTASIS. JRNL REF ONCOGENE V. 42 278 2023 JRNL REFN ESSN 1476-5594 JRNL PMID 36258022 JRNL DOI 10.1038/S41388-022-02481-W REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.TWAFRA,C.G.SOKOLIK,T.SNEH,K.D.SRIKANTH,T.MEIRSON,A.GENNA, REMARK 1 AUTH 2 J.H.CHILL,H.GIL-HENN REMARK 1 TITL A NOVEL PYK2-DERIVED PEPTIDE INHIBITS INVADOPODIA-MEDIATED REMARK 1 TITL 2 BREAST CANCER METASTASIS REMARK 1 REF BIORXIV 2022 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2022.04.06.487297 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292115372. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 123 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM CORTACTIN C-TERMINAL SH3 REMARK 210 DOMAIN, 0.8 MM PYK2-PRR2 PEPTIDE, REMARK 210 30 MM SODIUM PHOSPHATE, 0.01 % REMARK 210 W/V SODIUM AZIDE, 93% H2O/7% D2O; REMARK 210 0.5 MM PYK2-PRR2 PEPTIDE, 30 MM REMARK 210 SODIUM PHOSPHATE, 0.01 % W/V REMARK 210 SODIUM AZIDE, 93% H2O/7% D2O; REMARK 210 0.8 MM 2H,13C,15N CORTACTIN C- REMARK 210 TERMINAL SH3 DOMAIN, 0.8 MM PYK2- REMARK 210 PRR2 PEPTIDE, 30 MM SODIUM REMARK 210 PHOSPHATE, 0.01 % W/V SODIUM REMARK 210 AZIDE, 100% D2O; 0.8 MM REMARK 210 CORTACTIN C-TERMINAL SH3 DOMAIN, REMARK 210 0.8 MM PYK2-PRR2 PEPTIDE, 30 MM REMARK 210 SODIUM PHOSPHATE, 0.01 % W/V REMARK 210 SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 1H-15N HSQC; 3D HNCACB; 2D 1H-1H REMARK 210 COSY; 3D 12C13C FILTERED-EDITED REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : DRX700 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS+, TOPSPIN 3.6.1 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 14 REMARK 465 HIS A 15 REMARK 465 MET A 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 29 49.93 -92.05 REMARK 500 8 ALA A 29 40.90 -96.31 REMARK 500 14 ALA A 29 37.85 -97.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50901 RELATED DB: BMRB DBREF 7PLL A 17 73 UNP Q60598 SRC8_MOUSE 490 546 DBREF 7PLL B 202 220 PDB 7PLL 7PLL 202 220 SEQADV 7PLL GLY A 14 UNP Q60598 EXPRESSION TAG SEQADV 7PLL HIS A 15 UNP Q60598 EXPRESSION TAG SEQADV 7PLL MET A 16 UNP Q60598 EXPRESSION TAG SEQRES 1 A 60 GLY HIS MET GLY ILE THR ALA ILE ALA LEU TYR ASP TYR SEQRES 2 A 60 GLN ALA ALA GLY ASP ASP GLU ILE SER PHE ASP PRO ASP SEQRES 3 A 60 ASP ILE ILE THR ASN ILE GLU MET ILE ASP ASP GLY TRP SEQRES 4 A 60 TRP ARG GLY VAL CYS LYS GLY ARG TYR GLY LEU PHE PRO SEQRES 5 A 60 ALA ASN TYR VAL GLU LEU ARG GLN SEQRES 1 B 19 THR ALA PHE GLN GLU PRO PRO PRO LYS PRO SER ARG PRO SEQRES 2 B 19 LYS TYR ARG PRO PRO PRO SHEET 1 AA1 5 ARG A 60 PRO A 65 0 SHEET 2 AA1 5 TRP A 52 CYS A 57 -1 N CYS A 57 O ARG A 60 SHEET 3 AA1 5 ILE A 41 GLU A 46 -1 N GLU A 46 O ARG A 54 SHEET 4 AA1 5 THR A 19 ALA A 22 -1 N ALA A 20 O ILE A 42 SHEET 5 AA1 5 VAL A 69 LEU A 71 -1 O GLU A 70 N ILE A 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1