HEADER PROTEIN TRANSPORT 02-SEP-21 7PMP TITLE SOLUTION STRUCTURE OF LEGIONELLA PNEUMOPHILA LSPD COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II PROTEIN SECRETION LSPD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: LSPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LEGIONELLA PNEUMOPHILA, TYPE II SECRETION SYSTEM, GSPD, RECOGNITION, KEYWDS 2 PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.J.PORTLOCK,J.A.GARNETT REVDAT 2 19-JUN-24 7PMP 1 REMARK REVDAT 1 14-SEP-22 7PMP 0 JRNL AUTH T.J.PORTLOCK,J.A.GARNETT JRNL TITL SOLUTION STRUCTURE OF LEGIONELLA PNEUMOPHILA LSPD N0 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, ARIA REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), LINGE, O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292117967. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 MM NACL, 50 MM SODIUM REMARK 210 PHOSPHATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-99% 13C; U-99% 15N] REMARK 210 LSPD N0, 50 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HCCH-TOCSY; 3D CCH- REMARK 210 TOCSY; 3D HNCA; 3D HN(CO)CA; 3D REMARK 210 HNCACB; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N NOESY; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 119 96.98 -65.74 REMARK 500 1 HIS A 120 -74.89 -130.34 REMARK 500 1 HIS A 122 64.74 -111.21 REMARK 500 1 VAL A 124 36.76 -93.30 REMARK 500 1 ASP A 128 82.73 54.17 REMARK 500 1 MET A 130 42.21 -86.86 REMARK 500 1 ASN A 139 99.24 -39.56 REMARK 500 1 SER A 172 -175.54 -62.38 REMARK 500 1 THR A 173 157.78 -38.53 REMARK 500 1 PRO A 174 135.97 -36.33 REMARK 500 1 ASN A 198 70.42 -100.49 REMARK 500 1 THR A 212 -63.10 -130.59 REMARK 500 1 GLN A 213 78.32 62.06 REMARK 500 1 LEU A 217 37.03 -96.42 REMARK 500 1 LYS A 222 89.99 60.75 REMARK 500 2 ALA A 117 -35.54 -148.94 REMARK 500 2 HIS A 120 70.74 55.25 REMARK 500 2 HIS A 123 70.28 47.09 REMARK 500 2 ASP A 126 -63.83 -142.54 REMARK 500 2 ASN A 139 99.23 -32.35 REMARK 500 2 SER A 172 -176.03 -53.33 REMARK 500 2 THR A 173 156.54 -38.65 REMARK 500 2 PRO A 174 130.63 -37.04 REMARK 500 2 ASN A 198 64.54 -104.90 REMARK 500 2 THR A 212 64.67 -150.21 REMARK 500 2 GLN A 213 104.77 65.13 REMARK 500 3 HIS A 122 84.57 64.16 REMARK 500 3 ASP A 125 -71.43 -115.39 REMARK 500 3 MET A 130 89.60 68.92 REMARK 500 3 LYS A 133 106.12 -161.46 REMARK 500 3 ASN A 139 101.61 -43.58 REMARK 500 3 SER A 172 87.87 -69.26 REMARK 500 3 ASN A 198 79.06 -108.06 REMARK 500 3 ASP A 209 -47.84 71.59 REMARK 500 3 LYS A 222 79.19 53.40 REMARK 500 4 HIS A 119 -156.74 58.97 REMARK 500 4 ASN A 139 100.44 -38.71 REMARK 500 4 ASN A 198 68.25 -104.59 REMARK 500 4 ILE A 208 45.51 -88.40 REMARK 500 4 ALA A 210 64.14 -154.17 REMARK 500 5 VAL A 124 -73.11 71.32 REMARK 500 5 ASP A 127 32.03 -99.84 REMARK 500 5 ASN A 139 98.45 -38.81 REMARK 500 5 SER A 172 -176.23 -61.27 REMARK 500 5 THR A 173 157.50 -39.88 REMARK 500 5 PRO A 174 134.25 -36.39 REMARK 500 5 ALA A 210 95.00 67.28 REMARK 500 5 SER A 214 102.07 -165.98 REMARK 500 5 LEU A 218 77.05 68.04 REMARK 500 5 PRO A 225 76.49 -67.53 REMARK 500 REMARK 500 THIS ENTRY HAS 188 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34663 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF LEGIONELLA PNEUMOPHILA LSPD DBREF 7PMP A 131 226 UNP I7I3K3 I7I3K3_LEGPN 115 210 SEQADV 7PMP MET A 116 UNP I7I3K3 INITIATING METHIONINE SEQADV 7PMP ALA A 117 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP HIS A 118 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP HIS A 119 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP HIS A 120 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP HIS A 121 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP HIS A 122 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP HIS A 123 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP VAL A 124 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP ASP A 125 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP ASP A 126 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP ASP A 127 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP ASP A 128 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP LYS A 129 UNP I7I3K3 EXPRESSION TAG SEQADV 7PMP MET A 130 UNP I7I3K3 EXPRESSION TAG SEQRES 1 A 111 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 111 LYS MET GLY SER LYS LEU TRP ASN LEU ARG ASN ALA ASP SEQRES 3 A 111 ILE ARG ALA VAL ILE ALA GLU VAL SER ARG ILE THR GLY SEQRES 4 A 111 LYS ASN PHE VAL ILE ASP PRO ARG VAL GLN GLY LYS VAL SEQRES 5 A 111 SER ILE VAL SER SER THR PRO LEU SER SER ARG GLU LEU SEQRES 6 A 111 TYR GLN VAL PHE LEU SER VAL LEU GLN VAL SER GLY TYR SEQRES 7 A 111 ALA ALA ILE PRO ASN GLY GLU ILE ILE LYS ILE ILE PRO SEQRES 8 A 111 ASN ILE ASP ALA LYS THR GLN SER PRO ASP LEU LEU SER SEQRES 9 A 111 GLY MET LYS SER PRO PRO ARG HELIX 1 AA1 ILE A 142 GLY A 154 1 13 HELIX 2 AA2 SER A 176 GLY A 192 1 17 SHEET 1 AA1 2 ALA A 140 ASP A 141 0 SHEET 2 AA1 2 LYS A 166 VAL A 167 -1 O VAL A 167 N ALA A 140 SHEET 1 AA2 3 ASN A 156 ILE A 159 0 SHEET 2 AA2 3 ILE A 201 ILE A 205 1 O ILE A 202 N ASN A 156 SHEET 3 AA2 3 ALA A 194 ASN A 198 -1 N ILE A 196 O LYS A 203 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 151 0 0 2 5 0 0 6 864 1 0 9 END