HEADER BLOOD CLOTTING 02-SEP-21 7PMU TITLE CRYSTAL STRUCTURE OF NATIVE IRIPIN-8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERPIN-8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IRIPIN-8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: IXODES RICINUS; SOURCE 3 ORGANISM_COMMON: COMMON TICK, ACARUS RICINUS; SOURCE 4 ORGANISM_TAXID: 34613; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, SERPIN, TICK, SALIVA, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR S.POLDERDIJK,J.KOTAL,J.CHMELAR,J.A.HUNTINGTON REVDAT 2 31-JAN-24 7PMU 1 REMARK REVDAT 1 13-OCT-21 7PMU 0 JRNL AUTH J.KOTAL,S.G.I.POLDERDIJK,H.LANGHANSOVA,M.EDEROVA, JRNL AUTH 2 L.A.MARTINS,Z.BERANKOVA,A.CHLASTAKOVA,O.HAJDUSEK, JRNL AUTH 3 M.KOTSYFAKIS,J.A.HUNTINGTON,J.CHMELAR JRNL TITL IXODES RICINUS SALIVARY SERPIN IRIPIN-8 INHIBITS THE JRNL TITL 2 INTRINSIC PATHWAY OF COAGULATION AND COMPLEMENT. JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 34502392 JRNL DOI 10.3390/IJMS22179480 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1926 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2677 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.4400 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.4910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.57000 REMARK 3 B22 (A**2) : 1.88000 REMARK 3 B33 (A**2) : 0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.370 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3007 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2767 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4078 ; 1.568 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6395 ; 1.325 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 385 ; 7.662 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;35.556 ;23.197 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 451 ;14.748 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.916 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3333 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 605 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7PMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292117979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38420 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 75.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CDX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 7.8, 5% PGA-LM, 30% V/V REMARK 280 PEG550 MME, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.33600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.54450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.33600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.54450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.33600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.54450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.33600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.54450 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 48.47550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 75.54450 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 48.47550 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 75.54450 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 48.47550 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.54450 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 48.47550 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 75.54450 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 48.47550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.33600 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 48.47550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 65.33600 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 48.47550 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 65.33600 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 48.47550 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 65.33600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 550 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 576 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 GLU A 3 REMARK 465 ILE A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 7 CG OD1 OD2 REMARK 470 LYS A 8 CD CE NZ REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 ARG A 13 CD NE CZ NH1 NH2 REMARK 470 ASP A 55 CG OD1 OD2 REMARK 470 GLU A 73 OE1 OE2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 GLN A 83 CD OE1 NE2 REMARK 470 ASP A 89 CG OD1 OD2 REMARK 470 HIS A 92 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 ASP A 116 CG OD1 OD2 REMARK 470 GLU A 128 CD OE1 OE2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 153 CD CE NZ REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 LYS A 177 CE NZ REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 201 NZ REMARK 470 ARG A 208 NE CZ NH1 NH2 REMARK 470 LYS A 210 CE NZ REMARK 470 ASN A 233 CG OD1 ND2 REMARK 470 ASP A 234 CG OD1 OD2 REMARK 470 GLU A 244 CD OE1 OE2 REMARK 470 LYS A 245 CE NZ REMARK 470 GLN A 258 CG CD OE1 NE2 REMARK 470 LYS A 273 NZ REMARK 470 LYS A 275 CE NZ REMARK 470 LYS A 278 NZ REMARK 470 LYS A 280 CE NZ REMARK 470 ASP A 282 CG OD1 OD2 REMARK 470 LYS A 284 CD CE NZ REMARK 470 LEU A 321 CD1 CD2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 VAL A 342 CG1 CG2 REMARK 470 GLN A 344 CG CD OE1 NE2 REMARK 470 THR A 347 OG1 CG2 REMARK 470 VAL A 351 CG1 CG2 REMARK 470 THR A 352 OG1 CG2 REMARK 470 LYS A 373 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 53 O HOH A 501 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 199 -33.30 -135.15 REMARK 500 ASN A 233 36.12 28.48 REMARK 500 ARG A 346 -72.14 -92.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 7PMU A 1 386 UNP Q06B72 Q06B72_IXORI 17 402 SEQADV 7PMU GLU A 10 UNP Q06B72 LYS 26 CONFLICT SEQADV 7PMU PHE A 36 UNP Q06B72 LEU 52 VARIANT SEQADV 7PMU THR A 290 UNP Q06B72 PRO 306 VARIANT SEQADV 7PMU SER A 318 UNP Q06B72 PHE 334 VARIANT SEQRES 1 A 386 GLN ASP GLU ILE SER GLN ASP LYS TRP GLU LEU ALA ARG SEQRES 2 A 386 ALA ASN ASN TYR LEU GLY LEU ASN LEU LEU LYS GLN LEU SEQRES 3 A 386 PRO SER ASN ASP LYS THR ASN VAL PHE PHE SER PRO PHE SEQRES 4 A 386 SER VAL SER THR ALA MET GLY MET ALA TYR ALA GLY ALA SEQRES 5 A 386 ARG GLY ASP THR LEU GLU GLN LEU THR LEU ASN PHE GLY SEQRES 6 A 386 TYR ALA ALA ASP GLU LEU ASN GLU GLY LYS VAL LEU ALA SEQRES 7 A 386 LEU PHE LYS GLU GLN LEU GLN SER THR ASN ASP LEU PRO SEQRES 8 A 386 HIS ASP TYR THR LEU ASN ILE ALA ASN ALA ALA VAL ALA SEQRES 9 A 386 GLN GLU GLY TYR GLY ILE LEU PRO GLU TYR THR ASP ALA SEQRES 10 A 386 LEU THR SER SER PHE GLY ALA GLU TYR ILE GLU ALA ASP SEQRES 11 A 386 PHE GLN LYS ARG GLY GLN GLU ALA ILE GLN LYS ILE ASN SEQRES 12 A 386 ALA TRP VAL SER ASN ARG THR HIS GLY LYS VAL GLN SER SEQRES 13 A 386 LEU PHE ASP GLU PRO PRO ASP PHE SER THR ARG LEU ILE SEQRES 14 A 386 LEU LEU ASN ALA ILE TYR TYR LYS GLY THR TRP LEU TYR SEQRES 15 A 386 GLU PHE ASP LYS THR LYS THR LYS PRO ARG SER PHE TYR SEQRES 16 A 386 ASN GLY GLY VAL GLU LYS VAL GLN VAL PRO MET MET ARG SEQRES 17 A 386 LEU LYS SER THR LEU ASN HIS THR TYR ASN ALA ILE LEU SEQRES 18 A 386 ASN ALA ASP LEU VAL ASP LEU PRO TYR VAL GLY ASN ASP SEQRES 19 A 386 PHE SER MET THR ILE ILE LEU PRO ARG GLU LYS THR GLY SEQRES 20 A 386 LEU ALA SER LEU LYS SER VAL LEU THR SER GLN THR LEU SEQRES 21 A 386 ASN LEU ALA LEU GLN ASN MET TYR PRO LYS ASP MET LYS SEQRES 22 A 386 LEU LYS LEU PRO LYS PHE LYS LEU ASP THR LYS TYR THR SEQRES 23 A 386 LEU LYS PRO THR LEU GLU ALA MET GLY ILE THR LYS ILE SEQRES 24 A 386 PHE SER ALA ASP ALA ASP LEU SER GLY ILE SER GLY SER SEQRES 25 A 386 ARG ASN LEU TYR VAL SER ASP VAL LEU HIS LYS ALA VAL SEQRES 26 A 386 LEU GLU VAL ASN GLU GLU GLY SER GLU ALA ALA ALA VAL SEQRES 27 A 386 THR GLY PHE VAL ILE GLN LEU ARG THR ALA ALA PHE VAL SEQRES 28 A 386 THR PRO PRO PRO LEU PRO LYS VAL TYR VAL ASP HIS PRO SEQRES 29 A 386 PHE ILE PHE LEU ILE ARG ASN SER LYS THR ASN THR ILE SEQRES 30 A 386 MET PHE LEU GLY GLU ILE ASN ALA LEU HET P6G A 401 19 HET PG4 A 402 13 HET PG4 A 403 13 HET PG4 A 404 13 HET PEG A 405 7 HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 2 P6G C12 H26 O7 FORMUL 3 PG4 3(C8 H18 O5) FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *78(H2 O) HELIX 1 AA1 SER A 5 LEU A 26 1 22 HELIX 2 AA2 SER A 37 ALA A 50 1 14 HELIX 3 AA3 ARG A 53 ASN A 63 1 11 HELIX 4 AA4 ALA A 67 LEU A 71 5 5 HELIX 5 AA5 ASN A 72 ASP A 89 1 18 HELIX 6 AA6 LEU A 111 GLY A 123 1 13 HELIX 7 AA7 ARG A 134 THR A 150 1 17 HELIX 8 AA8 ASP A 185 THR A 189 5 5 HELIX 9 AA9 GLY A 197 VAL A 199 5 3 HELIX 10 AB1 VAL A 231 ASN A 233 5 3 HELIX 11 AB2 GLY A 247 LEU A 255 1 9 HELIX 12 AB3 THR A 256 GLN A 265 1 10 HELIX 13 AB4 LEU A 287 MET A 294 1 8 HELIX 14 AB5 THR A 297 SER A 301 5 5 HELIX 15 AB6 LEU A 306 GLY A 311 1 6 SHEET 1 AA1 7 VAL A 34 PHE A 36 0 SHEET 2 AA1 7 ILE A 377 ILE A 383 -1 O LEU A 380 N PHE A 36 SHEET 3 AA1 7 PHE A 365 ASN A 371 -1 N ILE A 369 O MET A 378 SHEET 4 AA1 7 PHE A 235 PRO A 242 -1 N THR A 238 O LEU A 368 SHEET 5 AA1 7 ALA A 223 PRO A 229 -1 N VAL A 226 O ILE A 239 SHEET 6 AA1 7 GLU A 200 ASN A 218 -1 N ASN A 218 O ALA A 223 SHEET 7 AA1 7 LYS A 190 ASN A 196 -1 N LYS A 190 O MET A 206 SHEET 1 AA2 8 VAL A 34 PHE A 36 0 SHEET 2 AA2 8 ILE A 377 ILE A 383 -1 O LEU A 380 N PHE A 36 SHEET 3 AA2 8 PHE A 365 ASN A 371 -1 N ILE A 369 O MET A 378 SHEET 4 AA2 8 PHE A 235 PRO A 242 -1 N THR A 238 O LEU A 368 SHEET 5 AA2 8 ALA A 223 PRO A 229 -1 N VAL A 226 O ILE A 239 SHEET 6 AA2 8 GLU A 200 ASN A 218 -1 N ASN A 218 O ALA A 223 SHEET 7 AA2 8 TYR A 268 PRO A 277 -1 O LEU A 276 N MET A 207 SHEET 8 AA2 8 LYS A 358 TYR A 360 1 O VAL A 359 N LYS A 273 SHEET 1 AA3 5 ALA A 124 ALA A 129 0 SHEET 2 AA3 5 THR A 95 GLN A 105 1 N ALA A 102 O ILE A 127 SHEET 3 AA3 5 LEU A 168 LYS A 177 -1 O ALA A 173 N ALA A 99 SHEET 4 AA3 5 VAL A 317 VAL A 328 1 O SER A 318 N LEU A 168 SHEET 5 AA3 5 PHE A 279 THR A 286 -1 N LEU A 281 O LEU A 326 SHEET 1 AA4 2 TRP A 180 TYR A 182 0 SHEET 2 AA4 2 GLY A 332 GLU A 334 1 O GLU A 334 N LEU A 181 CRYST1 96.951 130.672 151.089 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010314 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006619 0.00000