HEADER TRANSFERASE 07-SEP-21 7PNS TITLE PROTEIN KINASE A CATALYTIC SUBUNIT IN COMPLEX WITH PKI5-24 AND EN081 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: PKI-ALPHA,CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 11 MUSCLE/BRAIN ISOFORM; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: THE LAST 2 AMINO ACIDS ARE DISORDERED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090 KEYWDS PROTEIN KINASE, LIGAND COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GLINCA,J.M.MUELLER,M.RUF,S.MERKL REVDAT 3 31-JAN-24 7PNS 1 REMARK REVDAT 2 21-DEC-22 7PNS 1 JRNL REVDAT 1 21-SEP-22 7PNS 0 JRNL AUTH J.MULLER,R.KLEIN,O.TARKHANOVA,A.GRYNIUKOVA,P.BORYSKO, JRNL AUTH 2 S.MERKL,M.RUF,A.NEUMANN,M.GASTREICH,Y.S.MOROZ,G.KLEBE, JRNL AUTH 3 S.GLINCA JRNL TITL MAGNET FOR THE NEEDLE IN HAYSTACK: "CRYSTAL STRUCTURE FIRST" JRNL TITL 2 FRAGMENT HITS UNLOCK ACTIVE CHEMICAL MATTER USING TARGETED JRNL TITL 3 EXPLORATION OF VAST CHEMICAL SPACES. JRNL REF J.MED.CHEM. V. 65 15663 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36069712 JRNL DOI 10.1021/ACS.JMEDCHEM.2C00813 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.372 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 33232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.001 REMARK 3 FREE R VALUE TEST SET COUNT : 1662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1712 - 4.2333 0.98 2820 149 0.1607 0.1768 REMARK 3 2 4.2333 - 3.3606 0.95 2618 138 0.1539 0.1877 REMARK 3 3 3.3606 - 2.9359 0.99 2720 142 0.1916 0.2303 REMARK 3 4 2.9359 - 2.6675 0.99 2651 140 0.1970 0.2096 REMARK 3 5 2.6675 - 2.4763 0.99 2664 140 0.1830 0.2128 REMARK 3 6 2.4763 - 2.3303 0.98 2663 141 0.1775 0.2226 REMARK 3 7 2.3303 - 2.2136 0.92 2466 129 0.1742 0.2122 REMARK 3 8 2.2136 - 2.1173 0.97 2602 137 0.1803 0.1789 REMARK 3 9 2.1173 - 2.0358 0.98 2606 137 0.1912 0.2264 REMARK 3 10 2.0358 - 1.9655 0.98 2610 138 0.1960 0.2272 REMARK 3 11 1.9655 - 1.9041 0.97 2622 138 0.2023 0.2474 REMARK 3 12 1.9041 - 1.8550 0.95 2528 133 0.2036 0.2120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.132 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.022 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2969 REMARK 3 ANGLE : 1.006 4049 REMARK 3 CHIRALITY : 0.059 434 REMARK 3 PLANARITY : 0.007 542 REMARK 3 DIHEDRAL : 16.908 1748 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5174 22.1589 -6.1818 REMARK 3 T TENSOR REMARK 3 T11: 0.2563 T22: 0.3884 REMARK 3 T33: 0.2729 T12: 0.0493 REMARK 3 T13: 0.0455 T23: -0.0895 REMARK 3 L TENSOR REMARK 3 L11: 1.8340 L22: 3.3944 REMARK 3 L33: 3.0792 L12: -0.5952 REMARK 3 L13: 1.3644 L23: -1.5569 REMARK 3 S TENSOR REMARK 3 S11: -0.1287 S12: -0.1283 S13: -0.0277 REMARK 3 S21: 0.1854 S22: -0.0031 S23: 0.0364 REMARK 3 S31: -0.1901 S32: -0.2745 S33: 0.1903 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9398 14.3476 2.2465 REMARK 3 T TENSOR REMARK 3 T11: 0.2097 T22: 0.3520 REMARK 3 T33: 0.3303 T12: 0.0277 REMARK 3 T13: -0.0273 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 4.7435 L22: 6.6559 REMARK 3 L33: 1.8323 L12: 3.5137 REMARK 3 L13: 0.3637 L23: -0.3647 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: -0.0942 S13: -0.1147 REMARK 3 S21: 0.2853 S22: -0.0302 S23: -0.2778 REMARK 3 S31: 0.0075 S32: 0.1205 S33: 0.1173 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1201 16.8608 -12.6968 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.2216 REMARK 3 T33: 0.2381 T12: -0.0226 REMARK 3 T13: -0.0018 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.9313 L22: 1.3631 REMARK 3 L33: 2.1103 L12: 0.0066 REMARK 3 L13: 0.1429 L23: 0.4889 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: -0.1718 S13: -0.0934 REMARK 3 S21: 0.0032 S22: 0.0006 S23: -0.1262 REMARK 3 S31: 0.0619 S32: -0.1185 S33: 0.0260 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7074 19.2860 -27.4484 REMARK 3 T TENSOR REMARK 3 T11: 0.2628 T22: 0.2050 REMARK 3 T33: 0.2423 T12: -0.0049 REMARK 3 T13: 0.0394 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 2.6198 L22: 3.4055 REMARK 3 L33: 1.6761 L12: -0.2333 REMARK 3 L13: 0.1010 L23: 0.5376 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: 0.2772 S13: 0.1188 REMARK 3 S21: -0.1981 S22: -0.0480 S23: -0.3298 REMARK 3 S31: -0.1231 S32: -0.0104 S33: -0.0072 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3864 12.4969 -7.5742 REMARK 3 T TENSOR REMARK 3 T11: 0.1922 T22: 0.4153 REMARK 3 T33: 0.4258 T12: 0.0146 REMARK 3 T13: 0.0462 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.4400 L22: 1.6903 REMARK 3 L33: 3.7959 L12: 0.0500 REMARK 3 L13: 0.5671 L23: 0.2767 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: -0.1943 S13: -0.1861 REMARK 3 S21: 0.2286 S22: 0.0775 S23: -0.2912 REMARK 3 S31: 0.2334 S32: 0.0838 S33: -0.0464 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7741 2.9019 -29.0922 REMARK 3 T TENSOR REMARK 3 T11: 0.3254 T22: 0.3507 REMARK 3 T33: 0.4540 T12: 0.0238 REMARK 3 T13: 0.0436 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 5.0465 L22: 7.8642 REMARK 3 L33: 3.3526 L12: 1.1863 REMARK 3 L13: 2.7515 L23: 4.3502 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: 0.1733 S13: -0.7461 REMARK 3 S21: -0.1851 S22: 0.2156 S23: -0.5137 REMARK 3 S31: -0.2739 S32: -0.0951 S33: -0.2878 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1894 10.5572 -17.1372 REMARK 3 T TENSOR REMARK 3 T11: 0.4402 T22: 0.2986 REMARK 3 T33: 0.4417 T12: 0.0099 REMARK 3 T13: -0.1354 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 6.3094 L22: 4.8647 REMARK 3 L33: 5.3211 L12: 0.2433 REMARK 3 L13: -1.7641 L23: -0.6822 REMARK 3 S TENSOR REMARK 3 S11: -0.0863 S12: -0.3664 S13: -0.0517 REMARK 3 S21: 0.6928 S22: -0.2570 S23: -0.7261 REMARK 3 S31: -0.1826 S32: 0.3082 S33: 0.2328 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PNS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292117766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033193 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33232 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.855 REMARK 200 RESOLUTION RANGE LOW (A) : 42.171 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 13.31 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 28.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 13.58 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50000 REMARK 200 FOR SHELL : 5.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5M6Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 8 MG/ML IN 100 MM MES-BIS REMARK 280 -TRIS PH 6.9, 75 MM LITHIUM CHLORIDE, 1 MM DTT, 100 MM SODIUM- REMARK 280 EDTA. MASTER-MIX: 540 UL OF PROTEIN + 15 UL 10 MM MEGA8 IN WATER REMARK 280 + 45 UL 10 MM PKI5-24 IN PROTEIN-BUFFER. 70 % MASTER-MIX MIXED REMARK 280 WITH 30 % 50 MM LIGAND IN DMSO BEFORE SETTING OF DROPS. 15-24 % REMARK 280 METHANOL/WATER IN RESERVOIR., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.72200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.58600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.56100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.58600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.72200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.56100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 HIS B 23 REMARK 465 ASP B 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SEP A 10 OG P O1P O2P O3P REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 GLU A 13 CD OE1 OE2 REMARK 470 SER A 14 OG REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 23 NZ REMARK 470 GLU A 24 CD OE1 OE2 REMARK 470 GLU A 25 CD OE1 OE2 REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 LYS A 29 NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 SER A 53 OG REMARK 470 LYS A 61 NZ REMARK 470 LYS A 63 NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 78 CD CE NZ REMARK 470 LYS A 81 CD CE NZ REMARK 470 LEU A 82 CD1 CD2 REMARK 470 VAL A 104 CG1 CG2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 GLU A 121 CD OE1 OE2 REMARK 470 VAL A 191 CG1 CG2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LEU A 198 CD1 CD2 REMARK 470 LYS A 213 CE NZ REMARK 470 LYS A 217 CD CE NZ REMARK 470 ASP A 241 CG OD1 OD2 REMARK 470 ILE A 244 CD1 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 249 NZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LYS A 285 CD CE NZ REMARK 470 LYS A 295 CD CE NZ REMARK 470 ILE A 303 CD1 REMARK 470 LYS A 309 CE NZ REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ILE A 335 CD1 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 339 CG2 CD1 REMARK 470 LYS A 345 CD CE NZ REMARK 470 ILE B 22 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SEP A 10 -71.93 -90.17 REMARK 500 ASP A 166 40.83 -143.59 REMARK 500 ARG B 15 46.89 -107.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 7W8 A 402 DBREF 7PNS A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF 7PNS B 5 24 UNP P63248 IPKA_MOUSE 6 25 SEQADV 7PNS GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 7PNS HIS A -1 UNP P25321 EXPRESSION TAG SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE SEQRES 1 B 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 B 20 ARG ARG ASN ALA ILE HIS ASP MODRES 7PNS SEP A 10 SER MODIFIED RESIDUE MODRES 7PNS SEP A 139 SER MODIFIED RESIDUE MODRES 7PNS TPO A 197 THR MODIFIED RESIDUE MODRES 7PNS SEP A 338 SER MODIFIED RESIDUE HET SEP A 10 5 HET SEP A 139 14 HET TPO A 197 17 HET SEP A 338 14 HET MPD A 401 22 HET 7W8 A 402 20 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM 7W8 2-AZANYL-6-[5-[(DIMETHYLAMINO)METHYL]-2-FLUORANYL- HETNAM 2 7W8 PHENYL]-1H-INDOLE-3-CARBONITRILE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE HETSYN 7W8 2-AMINO-6-[5-[(DIMETHYLAMINO)METHYL]-2-FLUOROPHENYL]- HETSYN 2 7W8 1H-INDOLE-3-CARBONITRILE FORMUL 1 SEP 3(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 MPD C6 H14 O2 FORMUL 4 7W8 C18 H17 F N4 FORMUL 5 HOH *151(H2 O) HELIX 1 AA1 SEP A 10 SER A 32 1 23 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 GLN A 96 1 13 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SEP A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 SER A 252 1 11 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 ASP A 276 ARG A 280 5 5 HELIX 14 AB5 VAL A 288 ASN A 293 1 6 HELIX 15 AB6 HIS A 294 ALA A 298 5 5 HELIX 16 AB7 ASP A 301 GLN A 307 1 7 HELIX 17 AB8 GLY A 344 THR A 348 5 5 HELIX 18 AB9 THR B 6 SER B 13 1 8 SHEET 1 AA1 5 PHE A 43 THR A 51 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N PHE A 108 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C GLY A 9 N SEP A 10 1555 1555 1.33 LINK C SEP A 10 N GLU A 11 1555 1555 1.33 LINK C PHE A 138 N SEP A 139 1555 1555 1.33 LINK C SEP A 139 N GLU A 140 1555 1555 1.34 LINK C TRP A 196 N TPO A 197 1555 1555 1.32 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 CRYST1 69.444 73.122 77.172 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012958 0.00000