HEADER TRANSCRIPTION 09-SEP-21 7POH TITLE CRYSTAL STRUCTURE OF ZAD-DOMAIN OF SERENDIPITY-D PROTEIN FROM TITLE 2 D.MELANOGASTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERENDIPITY LOCUS PROTEIN DELTA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SRY-DELTA, SRY-D, CG17958; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ZINC-FINGER ASSOCIATED DOMAIN, ZAD, PROTEIN INTERACTION, KEYWDS 2 DIMERIZATION, SERENIPITY-D, ZINC BINDING, TREBLE-CLEFT-LIKE, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,G.S.KACHALOVA,A.N.BONCHUK,A.Y.NIKOLAEVA,P.G.GEORGIEV, AUTHOR 2 V.O.POPOV REVDAT 3 20-JUL-22 7POH 1 JRNL REVDAT 2 01-JUN-22 7POH 1 JRNL REVDAT 1 08-DEC-21 7POH 0 JRNL AUTH A.N.BONCHUK,K.M.BOYKO,A.Y.NIKOLAEVA,A.D.BURTSEVA,V.O.POPOV, JRNL AUTH 2 P.G.GEORGIEV JRNL TITL STRUCTURAL INSIGHTS INTO HIGHLY SIMILAR SPATIAL ORGANIZATION JRNL TITL 2 OF ZINC-FINGER ASSOCIATED DOMAINS WITH A VERY LOW SEQUENCE JRNL TITL 3 SIMILARITY. JRNL REF STRUCTURE V. 30 1004 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 35580610 JRNL DOI 10.1016/J.STR.2022.04.009 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 12183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 633 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 916 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.4430 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.4760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1376 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.298 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.099 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1401 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1329 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1893 ; 2.542 ; 1.667 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3065 ; 1.427 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 176 ;11.445 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;41.638 ;23.279 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 249 ;19.672 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;20.888 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 200 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1534 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 292 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4680 40.1345 64.9007 REMARK 3 T TENSOR REMARK 3 T11: 0.1326 T22: 0.1257 REMARK 3 T33: 0.1092 T12: -0.0448 REMARK 3 T13: 0.0183 T23: -0.0701 REMARK 3 L TENSOR REMARK 3 L11: 1.1910 L22: 4.6304 REMARK 3 L33: 2.5092 L12: -0.9470 REMARK 3 L13: -1.0649 L23: -1.5675 REMARK 3 S TENSOR REMARK 3 S11: -0.1285 S12: -0.2082 S13: 0.1154 REMARK 3 S21: 0.5750 S22: 0.2006 S23: -0.0505 REMARK 3 S31: -0.1164 S32: 0.1006 S33: -0.0722 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9756 45.2875 40.9698 REMARK 3 T TENSOR REMARK 3 T11: 0.2047 T22: 0.0649 REMARK 3 T33: 0.0638 T12: -0.0632 REMARK 3 T13: -0.0958 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 3.3659 L22: 4.0463 REMARK 3 L33: 4.6100 L12: -1.6300 REMARK 3 L13: 1.8137 L23: -3.9037 REMARK 3 S TENSOR REMARK 3 S11: 0.1393 S12: 0.1778 S13: -0.1171 REMARK 3 S21: -0.7680 S22: 0.3000 S23: 0.3613 REMARK 3 S31: 0.8267 S32: -0.2861 S33: -0.4393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7POH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292118053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12833 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 99.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.85300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 1.3M LITHIUM REMARK 280 SULFATE 1.3M, 0.1M SODIUM CHLORIDE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.83350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.58050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.58050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.25025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.58050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.58050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.41675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.58050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.58050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.25025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.58050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.58050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.41675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.83350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 13 REMARK 465 ASP A 14 REMARK 465 THR A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 THR B 15 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 LYS B 93 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -1 CG CD OE1 OE2 REMARK 470 LEU A 12 CG CD1 CD2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 0 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 20 OG REMARK 470 MET B 21 CG SD CE REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 83 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 7 CA - C - N ANGL. DEV. = 12.8 DEGREES REMARK 500 ASN A 77 CB - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 LYS A 93 CA - C - O ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A -1 98.51 -57.19 REMARK 500 CYS A 7 -93.49 -171.79 REMARK 500 LEU A 91 171.14 -54.05 REMARK 500 GLU B -1 -34.56 90.02 REMARK 500 PHE B 0 87.50 38.72 REMARK 500 SER B 20 -123.62 -93.90 REMARK 500 ARG B 22 -155.72 -124.43 REMARK 500 SER B 32 45.46 -96.91 REMARK 500 SER B 33 -40.39 173.48 REMARK 500 GLN B 49 60.64 24.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 0 MET A 1 -145.36 REMARK 500 GLY A 8 ALA A 9 -130.20 REMARK 500 ASP A 92 LYS A 93 -147.32 REMARK 500 GLU B -1 PHE B 0 143.43 REMARK 500 LYS B 55 PRO B 56 -147.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 CYS A 7 SG 121.0 REMARK 620 3 CYS A 61 SG 108.3 127.6 REMARK 620 4 CYS A 64 SG 104.6 96.1 87.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 4 SG REMARK 620 2 CYS B 7 SG 104.1 REMARK 620 3 CYS B 61 SG 114.1 105.2 REMARK 620 4 CYS B 64 SG 119.3 111.1 102.4 REMARK 620 N 1 2 3 DBREF 7POH A 1 90 UNP P07664 SRYD_DROME 1 90 DBREF 7POH B 1 90 UNP P07664 SRYD_DROME 1 90 SEQADV 7POH PRO A -2 UNP P07664 EXPRESSION TAG SEQADV 7POH GLU A -1 UNP P07664 EXPRESSION TAG SEQADV 7POH PHE A 0 UNP P07664 EXPRESSION TAG SEQADV 7POH LEU A 91 UNP P07664 EXPRESSION TAG SEQADV 7POH ASP A 92 UNP P07664 EXPRESSION TAG SEQADV 7POH LYS A 93 UNP P07664 EXPRESSION TAG SEQADV 7POH PRO B -2 UNP P07664 EXPRESSION TAG SEQADV 7POH GLU B -1 UNP P07664 EXPRESSION TAG SEQADV 7POH PHE B 0 UNP P07664 EXPRESSION TAG SEQADV 7POH LEU B 91 UNP P07664 EXPRESSION TAG SEQADV 7POH ASP B 92 UNP P07664 EXPRESSION TAG SEQADV 7POH LYS B 93 UNP P07664 EXPRESSION TAG SEQRES 1 A 96 PRO GLU PHE MET ASP THR CYS PHE PHE CYS GLY ALA VAL SEQRES 2 A 96 ASP LEU SER ASP THR GLY SER SER SER SER MET ARG TYR SEQRES 3 A 96 GLU THR LEU SER ALA LYS VAL PRO SER SER GLN LYS THR SEQRES 4 A 96 VAL SER LEU VAL LEU THR HIS LEU ALA ASN CYS ILE GLN SEQRES 5 A 96 THR GLN LEU ASP LEU LYS PRO GLY ALA ARG LEU CYS PRO SEQRES 6 A 96 ARG CYS PHE GLN GLU LEU SER ASP TYR ASP THR ILE MET SEQRES 7 A 96 VAL ASN LEU MET THR THR GLN LYS ARG LEU THR THR GLN SEQRES 8 A 96 LEU LYS LEU ASP LYS SEQRES 1 B 96 PRO GLU PHE MET ASP THR CYS PHE PHE CYS GLY ALA VAL SEQRES 2 B 96 ASP LEU SER ASP THR GLY SER SER SER SER MET ARG TYR SEQRES 3 B 96 GLU THR LEU SER ALA LYS VAL PRO SER SER GLN LYS THR SEQRES 4 B 96 VAL SER LEU VAL LEU THR HIS LEU ALA ASN CYS ILE GLN SEQRES 5 B 96 THR GLN LEU ASP LEU LYS PRO GLY ALA ARG LEU CYS PRO SEQRES 6 B 96 ARG CYS PHE GLN GLU LEU SER ASP TYR ASP THR ILE MET SEQRES 7 B 96 VAL ASN LEU MET THR THR GLN LYS ARG LEU THR THR GLN SEQRES 8 B 96 LEU LYS LEU ASP LYS HET ZN A 101 1 HET ZN A 102 1 HET ZN B 101 1 HET ZN B 102 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *4(H2 O) HELIX 1 AA1 THR A 36 ILE A 48 1 13 HELIX 2 AA2 CYS A 61 LEU A 91 1 31 HELIX 3 AA3 THR B 36 ILE B 48 1 13 HELIX 4 AA4 CYS B 61 LEU B 91 1 31 SHEET 1 AA1 2 ASP A 2 THR A 3 0 SHEET 2 AA1 2 ALA A 9 VAL A 10 -1 O VAL A 10 N ASP A 2 SHEET 1 AA2 2 GLU A 24 THR A 25 0 SHEET 2 AA2 2 ARG A 59 LEU A 60 -1 O LEU A 60 N GLU A 24 SHEET 1 AA3 2 MET B 1 THR B 3 0 SHEET 2 AA3 2 VAL B 10 LEU B 12 -1 O ASP B 11 N ASP B 2 LINK SG CYS A 4 ZN ZN A 101 1555 1555 2.32 LINK SG CYS A 7 ZN ZN A 101 1555 1555 2.33 LINK SG CYS A 61 ZN ZN A 101 1555 1555 2.29 LINK SG CYS A 64 ZN ZN A 101 1555 1555 2.34 LINK SG CYS B 4 ZN ZN B 102 1555 1555 2.29 LINK SG CYS B 7 ZN ZN B 102 1555 1555 2.27 LINK SG CYS B 61 ZN ZN B 102 1555 1555 2.21 LINK SG CYS B 64 ZN ZN B 102 1555 1555 2.31 CRYST1 99.161 99.161 117.667 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010085 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008499 0.00000