HEADER PLANT PROTEIN 13-SEP-21 7PP2 TITLE COMPLEX OF RICE BLAST (MAGNAPORTHE ORYZAE) EFFECTOR PROTEIN AVR-PII TITLE 2 WITH THE HOST TARGET EXO70F2 FROM RICE (ORYZA SATIVA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOCYST SUBUNIT EXO70 FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AVR-PII PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 GENE: OJ1003_F04.39-1, OS02G0505400, OSJ_06848; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PYRICULARIA ORYZAE; SOURCE 10 ORGANISM_TAXID: 318829; SOURCE 11 GENE: AVR-PII, AVR-PII; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, ZINC-FINGER FOLD, EXOCYST, PLANT-PATHOGEN INTERACTIONS, KEYWDS 2 PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.C.DE LA CONCEPCION,A.R.BENTHAM,D.LAWSON,M.J.BANFIELD REVDAT 3 31-JAN-24 7PP2 1 REMARK REVDAT 2 11-JAN-23 7PP2 1 JRNL REVDAT 1 29-JUN-22 7PP2 0 JRNL AUTH J.C.DE LA CONCEPCION,K.FUJISAKI,A.R.BENTHAM,N.CRUZ MIRELES, JRNL AUTH 2 V.SANCHEZ DE MEDINA HERNANDEZ,M.SHIMIZU,D.M.LAWSON,S.KAMOUN, JRNL AUTH 3 R.TERAUCHI,M.J.BANFIELD JRNL TITL A BLAST FUNGUS ZINC-FINGER FOLD EFFECTOR BINDS TO A JRNL TITL 2 HYDROPHOBIC POCKET IN HOST EXO70 PROTEINS TO MODULATE IMMUNE JRNL TITL 3 RECOGNITION IN RICE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 59119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 36252011 JRNL DOI 10.1073/PNAS.2210559119 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 975 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1320 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3738 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : -8.55000 REMARK 3 B33 (A**2) : 5.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.99000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.745 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.347 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.338 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.498 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3798 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3665 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5119 ; 1.187 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8433 ; 1.067 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 5.629 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;32.117 ;21.848 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 693 ;15.598 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;17.020 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 483 ; 0.043 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4225 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 861 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 683 REMARK 3 ORIGIN FOR THE GROUP (A): -20.0941 -4.1301 -2.3346 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.3079 REMARK 3 T33: 0.0673 T12: -0.0401 REMARK 3 T13: 0.0538 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.9422 L22: 3.3974 REMARK 3 L33: 1.1752 L12: -1.0317 REMARK 3 L13: -0.1565 L23: 0.7770 REMARK 3 S TENSOR REMARK 3 S11: -0.0709 S12: 0.1171 S13: -0.1319 REMARK 3 S21: 0.0381 S22: -0.0421 S23: 0.1496 REMARK 3 S31: 0.1916 S32: -0.0146 S33: 0.1130 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7497 13.8307 3.3707 REMARK 3 T TENSOR REMARK 3 T11: 0.0478 T22: 0.2105 REMARK 3 T33: 0.3695 T12: 0.0462 REMARK 3 T13: -0.0912 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 6.2457 L22: 2.6452 REMARK 3 L33: 5.5385 L12: -0.9951 REMARK 3 L13: -2.0921 L23: -3.0612 REMARK 3 S TENSOR REMARK 3 S11: -0.2100 S12: 0.3408 S13: 0.9090 REMARK 3 S21: 0.0724 S22: -0.2198 S23: -0.7812 REMARK 3 S31: 0.1000 S32: 0.2491 S33: 0.4298 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7PP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292118026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 66.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RL5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M AMMONIUM IODIDE; 30% V/V REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.15800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.31050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.15800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.31050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 84 REMARK 465 ALA A 129A REMARK 465 ARG A 129B REMARK 465 GLY A 129C REMARK 465 SER A 129D REMARK 465 GLY A 129E REMARK 465 GLY A 129F REMARK 465 GLY A 129G REMARK 465 ALA A 129H REMARK 465 GLY A 129I REMARK 465 GLY A 129J REMARK 465 ALA A 129K REMARK 465 GLY A 129L REMARK 465 SER A 129M REMARK 465 SER A 129N REMARK 465 SER A 129O REMARK 465 SER A 129P REMARK 465 SER A 129Q REMARK 465 THR A 129R REMARK 465 ALA A 129S REMARK 465 GLY A 129T REMARK 465 ARG A 129U REMARK 465 ALA A 129V REMARK 465 GLY A 129W REMARK 465 VAL A 129X REMARK 465 ALA A 129Y REMARK 465 VAL A 129Z REMARK 465 GLN A 130A REMARK 465 LEU A 130B REMARK 465 LEU A 177 REMARK 465 ASP A 178 REMARK 465 PRO A 179 REMARK 465 THR A 180 REMARK 465 GLY A 181 REMARK 465 LEU A 182 REMARK 465 PHE A 183 REMARK 465 PHE A 184 REMARK 465 SER A 185 REMARK 465 LEU A 186 REMARK 465 ARG A 187 REMARK 465 ARG A 188 REMARK 465 LEU A 189 REMARK 465 SER A 190 REMARK 465 LEU A 191 REMARK 465 GLY A 192 REMARK 465 SER A 193 REMARK 465 MET A 194 REMARK 465 ASP A 195 REMARK 465 ASP A 196 REMARK 465 LEU A 197 REMARK 465 ASP A 198 REMARK 465 THR A 199 REMARK 465 SER A 200 REMARK 465 SER A 201 REMARK 465 GLU A 202 REMARK 465 PHE A 203 REMARK 465 ASP A 204 REMARK 465 ALA A 205 REMARK 465 ALA A 206 REMARK 465 THR A 207 REMARK 465 PRO A 208 REMARK 465 HIS A 209 REMARK 465 SER A 210 REMARK 465 ILE A 211 REMARK 465 ASP A 212 REMARK 465 VAL A 213 REMARK 465 ALA A 214 REMARK 465 PRO A 215 REMARK 465 GLU A 216 REMARK 465 VAL A 231 REMARK 465 PHE A 232 REMARK 465 ASP A 233 REMARK 465 PRO A 234 REMARK 465 VAL A 235 REMARK 465 ARG A 236 REMARK 465 PRO A 237 REMARK 465 GLU A 238 REMARK 465 ALA A 239 REMARK 465 VAL A 240 REMARK 465 ASP A 241 REMARK 465 ASP A 242 REMARK 465 LEU A 243 REMARK 465 ARG A 244 REMARK 465 ALA A 245 REMARK 465 ILE A 246 REMARK 465 ALA A 247 REMARK 465 ASP A 248 REMARK 465 ARG A 249 REMARK 465 MET A 250 REMARK 465 ALA A 251 REMARK 465 ARG A 252 REMARK 465 ALA A 253 REMARK 465 GLY A 254 REMARK 465 TYR A 255 REMARK 465 SER A 256 REMARK 465 ASP A 330 REMARK 465 GLU A 331 REMARK 465 ASP A 461 REMARK 465 ASN A 462 REMARK 465 ALA A 463 REMARK 465 ASP A 464 REMARK 465 ASP A 465 REMARK 465 GLN A 466 REMARK 465 ILE A 467 REMARK 465 ASP A 468 REMARK 465 LEU A 469 REMARK 465 ALA A 470 REMARK 465 ARG A 471 REMARK 465 ALA A 472 REMARK 465 GLU A 473 REMARK 465 ASP A 474 REMARK 465 GLN A 475 REMARK 465 ASP A 476 REMARK 465 GLN A 477 REMARK 465 GLU A 478 REMARK 465 HIS A 479 REMARK 465 LEU A 480 REMARK 465 GLU A 481 REMARK 465 SER A 482 REMARK 465 ASP A 572 REMARK 465 GLY A 573 REMARK 465 HIS A 574 REMARK 465 GLY A 575 REMARK 465 SER A 576 REMARK 465 GLY A 577 REMARK 465 SER A 578 REMARK 465 GLY A 579 REMARK 465 SER A 580 REMARK 465 SER A 581 REMARK 465 SER A 582 REMARK 465 GLY A 583 REMARK 465 SER A 584 REMARK 465 GLY A 585 REMARK 465 SER A 586 REMARK 465 GLY A 587 REMARK 465 HIS A 588 REMARK 465 SER A 589 REMARK 465 SER A 590 REMARK 465 SER A 591 REMARK 465 ARG A 592 REMARK 465 MET A 593 REMARK 465 SER A 594 REMARK 465 ILE A 595 REMARK 465 LYS A 596 REMARK 465 GLU A 597 REMARK 465 LYS A 598 REMARK 465 SER A 648 REMARK 465 GLN A 649 REMARK 465 VAL A 650 REMARK 465 ASP A 651 REMARK 465 GLY A 652 REMARK 465 GLY A 653 REMARK 465 ARG A 654 REMARK 465 ASN A 655 REMARK 465 SER A 656 REMARK 465 GLY A 657 REMARK 465 LYS A 658 REMARK 465 TYR A 659 REMARK 465 HIS A 684 REMARK 465 SER A 685 REMARK 465 ARG A 686 REMARK 465 ARG A 687 REMARK 465 ARG A 688 REMARK 465 THR A 689 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 THR B 22 REMARK 465 PRO B 23 REMARK 465 ALA B 24 REMARK 465 SER B 25 REMARK 465 LEU B 26 REMARK 465 ASN B 27 REMARK 465 GLY B 28 REMARK 465 ASN B 29 REMARK 465 THR B 30 REMARK 465 GLU B 31 REMARK 465 VAL B 32 REMARK 465 ALA B 33 REMARK 465 THR B 34 REMARK 465 ILE B 35 REMARK 465 SER B 36 REMARK 465 ASP B 37 REMARK 465 VAL B 38 REMARK 465 LYS B 39 REMARK 465 LEU B 40 REMARK 465 GLU B 41 REMARK 465 ALA B 42 REMARK 465 ARG B 43 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 158 CG SD CE REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 108 47.40 -96.97 REMARK 500 GLU A 109 53.31 -147.86 REMARK 500 ALA A 110 116.49 -174.15 REMARK 500 LEU A 161 19.73 39.21 REMARK 500 PRO A 222 1.02 -65.34 REMARK 500 VAL A 313 -64.26 -127.48 REMARK 500 SER A 327 50.99 -115.78 REMARK 500 GLU A 363 -44.74 -28.30 REMARK 500 SER A 424 22.45 -146.40 REMARK 500 LEU A 507 48.19 -87.45 REMARK 500 TRP A 562 78.47 -113.02 REMARK 500 MET A 563 -44.24 -141.81 REMARK 500 ARG A 645 -72.42 -86.84 REMARK 500 LYS A 661 -68.68 -108.22 REMARK 500 LYS B 53 -72.47 -68.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 51 SG REMARK 620 2 CYS B 54 SG 100.9 REMARK 620 3 HIS B 67 NE2 108.1 100.4 REMARK 620 4 CYS B 69 SG 99.4 124.9 120.7 REMARK 620 N 1 2 3 DBREF1 7PP2 A 84 689 UNP A0A0N7KFC4_ORYSJ DBREF2 7PP2 A A0A0N7KFC4 84 689 DBREF 7PP2 B 20 70 UNP C4B8B7 C4B8B7_MAGOR 20 70 SEQRES 1 A 606 ILE SER ALA ALA ALA PHE ASP ALA ALA GLU GLN LEU ILE SEQRES 2 A 606 GLN VAL TRP ASP GLY THR PRO GLU ALA LEU VAL PHE GLU SEQRES 3 A 606 ALA THR GLU ASP GLU VAL ALA GLU TYR LEU SER ALA VAL SEQRES 4 A 606 ASP VAL ALA ILE GLU HIS LEU ALA ARG GLY SER GLY GLY SEQRES 5 A 606 GLY ALA GLY GLY ALA GLY SER SER SER SER SER THR ALA SEQRES 6 A 606 GLY ARG ALA GLY VAL ALA VAL GLN LEU ALA MET ALA ARG SEQRES 7 A 606 LEU GLU GLU GLU LEU ARG HIS LEU MET VAL ARG HIS ALA SEQRES 8 A 606 VAL PRO LEU ASP PRO THR GLY LEU PHE PHE SER LEU ARG SEQRES 9 A 606 ARG LEU SER LEU GLY SER MET ASP ASP LEU ASP THR SER SEQRES 10 A 606 SER GLU PHE ASP ALA ALA THR PRO HIS SER ILE ASP VAL SEQRES 11 A 606 ALA PRO GLU THR ALA ARG GLY GLY PRO LEU VAL ASN PRO SEQRES 12 A 606 PHE GLU ASP GLN VAL PHE ASP PRO VAL ARG PRO GLU ALA SEQRES 13 A 606 VAL ASP ASP LEU ARG ALA ILE ALA ASP ARG MET ALA ARG SEQRES 14 A 606 ALA GLY TYR SER ARG GLU LEU ALA ASP ALA TYR CYS GLY SEQRES 15 A 606 ILE ARG ARG ASP LEU LEU ASP GLU TYR LEU SER ALA LEU SEQRES 16 A 606 GLY VAL GLU ARG LEU SER ILE ASP GLU VAL GLN ARG ILE SEQRES 17 A 606 GLU TRP LYS HIS LEU ASN ASP LYS MET LYS LYS TRP VAL SEQRES 18 A 606 GLN ALA VAL LYS THR VAL VAL ARG VAL LEU LEU ALA GLY SEQRES 19 A 606 GLU ARG ARG LEU CYS ASP GLN VAL LEU SER VAL SER ASP SEQRES 20 A 606 GLU LEU ARG GLU GLU CYS PHE ILE GLU SER THR LYS GLY SEQRES 21 A 606 CYS ILE MET GLN ILE LEU SER PHE GLY ASP ALA VAL ALA SEQRES 22 A 606 VAL CYS PRO ARG SER PRO GLU LYS LEU SER ARG ILE LEU SEQRES 23 A 606 ASP MET TYR GLU ALA LEU ALA GLU VAL ILE PRO GLU MET SEQRES 24 A 606 LYS ASP LEU CYS LEU GLY SER SER GLY ASP GLY VAL ILE SEQRES 25 A 606 SER ASP VAL GLN ALA ASN LEU ASP ARG LEU GLY ASP ALA SEQRES 26 A 606 ILE ARG GLY THR LEU PHE GLU PHE GLY LYS VAL LEU GLN SEQRES 27 A 606 LEU GLU SER SER ARG ARG ALA MET THR ALA GLY GLU ILE SEQRES 28 A 606 HIS PRO MET THR ARG TYR VAL MET ASN TYR LEU ARG LEU SEQRES 29 A 606 LEU VAL VAL TYR SER ASP THR LEU ASP ALA LEU LEU ASP SEQRES 30 A 606 ASP ASN ALA ASP ASP GLN ILE ASP LEU ALA ARG ALA GLU SEQRES 31 A 606 ASP GLN ASP GLN GLU HIS LEU GLU SER MET THR PRO LEU SEQRES 32 A 606 GLY LYS ARG LEU LEU LYS LEU ILE SER TYR LEU GLU ALA SEQRES 33 A 606 ASN LEU GLU GLU LYS SER LYS LEU TYR GLU ASP SER ALA SEQRES 34 A 606 LEU GLU CYS ILE PHE SER MET ASN ASN LEU LEU TYR ILE SEQRES 35 A 606 VAL GLN LYS VAL ARG ASP SER GLU LEU GLY LYS ILE LEU SEQRES 36 A 606 GLY ASP HIS TRP VAL LYS ARG ARG ASN GLY LYS ILE ARG SEQRES 37 A 606 GLN TYR SER LYS SER TYR LEU ARG ILE SER TRP MET LYS SEQRES 38 A 606 VAL LEU SER PHE LEU LYS ASP ASP GLY HIS GLY SER GLY SEQRES 39 A 606 SER GLY SER SER SER GLY SER GLY SER GLY HIS SER SER SEQRES 40 A 606 SER ARG MET SER ILE LYS GLU LYS PHE LYS ASN PHE ASN SEQRES 41 A 606 LEU ALA PHE GLU GLU ILE TYR ARG ASN GLN THR THR TRP SEQRES 42 A 606 LYS VAL PRO ASP PRO GLN LEU ARG GLU GLU LEU LYS ILE SEQRES 43 A 606 SER ILE SER GLU ASN VAL ILE PRO ALA TYR ARG ALA PHE SEQRES 44 A 606 LEU GLY ARG TYR GLY SER GLN VAL ASP GLY GLY ARG ASN SEQRES 45 A 606 SER GLY LYS TYR ILE LYS TYR THR PRO GLU ASP LEU GLU SEQRES 46 A 606 SER GLN LEU SER ASP LEU PHE GLU GLY ALA PRO GLY PRO SEQRES 47 A 606 ALA ASN HIS SER ARG ARG ARG THR SEQRES 1 B 51 LEU PRO THR PRO ALA SER LEU ASN GLY ASN THR GLU VAL SEQRES 2 B 51 ALA THR ILE SER ASP VAL LYS LEU GLU ALA ARG SER ASP SEQRES 3 B 51 THR THR TYR HIS LYS CYS SER LYS CYS GLY TYR GLY SER SEQRES 4 B 51 ASP ASP SER ASP ALA TYR PHE ASN HIS LYS CYS ASN HET ZN B 101 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *(H2 O) HELIX 1 AA1 ALA A 86 GLY A 101 1 16 HELIX 2 AA2 ALA A 110 LEU A 129 1 20 HELIX 3 AA3 LEU A 161 VAL A 174 1 14 HELIX 4 AA4 GLY A 220 ASN A 225 1 6 HELIX 5 AA5 ASN A 225 GLN A 230 1 6 HELIX 6 AA6 GLU A 258 GLY A 279 1 22 HELIX 7 AA7 SER A 284 ILE A 291 1 8 HELIX 8 AA8 GLU A 292 VAL A 313 1 22 HELIX 9 AA9 VAL A 313 LEU A 326 1 14 HELIX 10 AB1 ARG A 333 VAL A 357 1 25 HELIX 11 AB2 SER A 361 GLU A 363 5 3 HELIX 12 AB3 LYS A 364 GLU A 377 1 14 HELIX 13 AB4 GLU A 377 CYS A 386 1 10 HELIX 14 AB5 SER A 390 GLU A 423 1 34 HELIX 15 AB6 MET A 429 GLU A 433 5 5 HELIX 16 AB7 HIS A 435 VAL A 449 1 15 HELIX 17 AB8 TYR A 451 LEU A 459 1 9 HELIX 18 AB9 THR A 484 SER A 505 1 22 HELIX 19 AC1 ASP A 510 ASP A 531 1 22 HELIX 20 AC2 GLU A 533 GLY A 539 1 7 HELIX 21 AC3 GLY A 539 TRP A 562 1 24 HELIX 22 AC4 PHE A 602 THR A 614 1 13 HELIX 23 AC5 ASP A 620 TYR A 646 1 27 HELIX 24 AC6 THR A 663 SER A 672 1 10 HELIX 25 AC7 ASP B 60 ASN B 66 1 7 SHEET 1 AA1 2 HIS B 49 LYS B 50 0 SHEET 2 AA1 2 GLY B 57 SER B 58 -1 O SER B 58 N HIS B 49 LINK SG CYS B 51 ZN ZN B 101 1555 1555 2.23 LINK SG CYS B 54 ZN ZN B 101 1555 1555 2.03 LINK NE2 HIS B 67 ZN ZN B 101 1555 1555 2.12 LINK SG CYS B 69 ZN ZN B 101 1555 1555 2.32 CRYST1 140.316 76.621 67.873 90.00 107.76 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007127 0.000000 0.002283 0.00000 SCALE2 0.000000 0.013051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015471 0.00000