HEADER SIGNALING PROTEIN 14-SEP-21 7PPN TITLE SHP2 CATALYTIC DOMAIN IN COMPLEX WITH CD28 (183-198) PHOSPHOPEPTIDE TITLE 2 (PTYR-191, P-THR-195) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11,TYROSINE- COMPND 3 PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1D,PTP-1D,PROTEIN-TYROSINE COMPND 6 PHOSPHATASE 2C,PTP-2C,SH-PTP2,SHP-2,SHP2,SH-PTP3,PROTEIN-TYROSINE COMPND 7 PHOSPHATASE 1D,PTP-1D,PROTEIN-TYROSINE PHOSPHATASE 2C,PTP-2C,SH-PTP2, COMPND 8 SHP-2,SHP2,SH-PTP3; COMPND 9 EC: 3.1.3.48,3.1.3.48; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 OTHER_DETAILS: SHP2 CATALYTIC DOMAIN WAS OPTIMISED FOR COMPND 13 CRYSTALLISATION AND MISSING RESIDUES FROM 315 TO 323 (ORIGINAL SHP2 COMPND 14 SEQUENCE NUMBERING), THESE MISSING RESIDUES IN THE OPTIMISED COMPND 15 CONSTRUCT (74-77) WERE REPLACED TO GSSG RESIDEUES.,SHP2 CATALYTIC COMPND 16 DOMAIN WAS OPTIMISED FOR CRYSTALLISATION AND MISSING RESIDUES FROM COMPND 17 315 TO 323 (ORIGINAL SHP2 SEQUENCE NUMBERING), THESE MISSING RESIDUES COMPND 18 IN THE OPTIMISED CONSTRUCT (74-77) WERE REPLACED TO GSSG RESIDEUES.; COMPND 19 MOL_ID: 2; COMPND 20 MOLECULE: T-CELL-SPECIFIC SURFACE GLYCOPROTEIN CD28; COMPND 21 CHAIN: B; COMPND 22 SYNONYM: TP44; COMPND 23 ENGINEERED: YES; COMPND 24 OTHER_DETAILS: PHOSPHORYLATED RESIDUES: PTYR-191, P-THR-195 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN11, PTP2C, SHPTP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS SHP2, PHOSPHATASE, CD28, PHOSPHOPEPTIDE, SIGNALING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.SOK,A.ZEKE,A.REMENYI REVDAT 3 31-JAN-24 7PPN 1 REMARK REVDAT 2 28-SEP-22 7PPN 1 JRNL REVDAT 1 07-SEP-22 7PPN 0 JRNL AUTH A.ZEKE,T.TAKACS,P.SOK,K.NEMETH,K.KIRSCH,P.EGRI,A.L.POTI, JRNL AUTH 2 I.BENTO,G.E.TUSNADY,A.REMENYI JRNL TITL STRUCTURAL INSIGHTS INTO THE PSER/PTHR DEPENDENT REGULATION JRNL TITL 2 OF THE SHP2 TYROSINE PHOSPHATASE IN INSULIN AND CD28 JRNL TITL 3 SIGNALING. JRNL REF NAT COMMUN V. 13 5439 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36114179 JRNL DOI 10.1038/S41467-022-32918-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.560 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2700 - 4.5800 1.00 1856 151 0.1620 0.1683 REMARK 3 2 4.5800 - 3.6300 1.00 1801 147 0.1512 0.1845 REMARK 3 3 3.6300 - 3.1800 1.00 1759 145 0.1836 0.2023 REMARK 3 4 3.1700 - 2.8800 1.00 1755 143 0.2069 0.2365 REMARK 3 5 2.8800 - 2.6800 1.00 1748 142 0.2113 0.2166 REMARK 3 6 2.6800 - 2.5200 1.00 1735 143 0.2032 0.2471 REMARK 3 7 2.5200 - 2.3900 1.00 1742 142 0.1984 0.2364 REMARK 3 8 2.3900 - 2.2900 1.00 1727 141 0.1864 0.2472 REMARK 3 9 2.2900 - 2.2000 1.00 1748 143 0.1846 0.2380 REMARK 3 10 2.2000 - 2.1300 1.00 1714 141 0.1798 0.2102 REMARK 3 11 2.1300 - 2.0600 1.00 1704 139 0.2023 0.2419 REMARK 3 12 2.0600 - 2.0000 1.00 1754 142 0.2035 0.2526 REMARK 3 13 2.0000 - 1.9500 1.00 1690 140 0.2382 0.2818 REMARK 3 14 1.9500 - 1.9000 0.99 1709 139 0.2862 0.3357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.235 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2405 REMARK 3 ANGLE : 0.875 3258 REMARK 3 CHIRALITY : 0.057 345 REMARK 3 PLANARITY : 0.004 426 REMARK 3 DIHEDRAL : 21.967 913 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 4 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7290 20.7789 -32.7526 REMARK 3 T TENSOR REMARK 3 T11: 0.2827 T22: 0.5308 REMARK 3 T33: 0.4328 T12: -0.0669 REMARK 3 T13: 0.0712 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: 2.1437 L22: 6.1275 REMARK 3 L33: 5.1547 L12: -2.5992 REMARK 3 L13: -0.4630 L23: 0.9871 REMARK 3 S TENSOR REMARK 3 S11: 0.1767 S12: 0.3723 S13: 0.1951 REMARK 3 S21: -0.3887 S22: -0.2475 S23: -0.8219 REMARK 3 S31: 0.0923 S32: 0.5140 S33: 0.0743 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 36 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4691 25.4806 -15.5262 REMARK 3 T TENSOR REMARK 3 T11: 0.2912 T22: 0.3210 REMARK 3 T33: 0.2971 T12: -0.0014 REMARK 3 T13: 0.0448 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.5733 L22: 2.2118 REMARK 3 L33: 3.4685 L12: -0.7248 REMARK 3 L13: 0.0336 L23: 0.4708 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: -0.0690 S13: 0.0738 REMARK 3 S21: 0.2888 S22: 0.0126 S23: 0.2008 REMARK 3 S31: -0.1145 S32: -0.1641 S33: 0.0297 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 147 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9735 9.4563 -17.4863 REMARK 3 T TENSOR REMARK 3 T11: 0.3642 T22: 0.3021 REMARK 3 T33: 0.3135 T12: -0.0215 REMARK 3 T13: 0.0354 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.3309 L22: 3.8768 REMARK 3 L33: 3.1456 L12: -0.2667 REMARK 3 L13: -0.4895 L23: 0.3657 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: -0.0896 S13: -0.2959 REMARK 3 S21: 0.2996 S22: -0.0010 S23: 0.3423 REMARK 3 S31: 0.5240 S32: -0.1514 S33: 0.0902 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 189 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4300 23.1760 -22.0662 REMARK 3 T TENSOR REMARK 3 T11: 0.8875 T22: 0.7123 REMARK 3 T33: 1.0529 T12: -0.1841 REMARK 3 T13: 0.0385 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.2684 L22: 3.0165 REMARK 3 L33: 0.3320 L12: 0.8987 REMARK 3 L13: -0.2931 L23: -0.9970 REMARK 3 S TENSOR REMARK 3 S11: 0.5058 S12: 1.6247 S13: 1.2515 REMARK 3 S21: -1.3585 S22: 0.2186 S23: -0.5992 REMARK 3 S31: -1.1251 S32: 0.9833 S33: -0.6050 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292117345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26486 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 1.34400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZM0 REMARK 200 REMARK 200 REMARK: RHOMBOID SHAPED CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 20000, 100 MM CITRATE BUFFER REMARK 280 PH 5.5, 50 MM EDTA, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.88000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.88000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.09500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.18150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.09500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.18150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.88000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.09500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.18150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.88000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.09500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.18150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 ARG B 183 REMARK 465 SER B 184 REMARK 465 ARG B 185 REMARK 465 LEU B 186 REMARK 465 LEU B 187 REMARK 465 HIS B 188 REMARK 465 MET B 194 REMARK 465 TPO B 195 REMARK 465 PRO B 196 REMARK 465 ARG B 197 REMARK 465 ARG B 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 39 CE NZ REMARK 470 ARG A 281 NE CZ NH1 NH2 REMARK 470 ARG A 282 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 21 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 121 117.54 -175.60 REMARK 500 ILE A 217 -35.14 -134.68 REMARK 500 VAL A 259 104.65 72.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 7PPN A 5 73 UNP Q06124 PTN11_HUMAN 246 314 DBREF 7PPN A 78 282 UNP Q06124 PTN11_HUMAN 324 528 DBREF 7PPN B 183 198 UNP P10747 CD28_HUMAN 183 198 SEQADV 7PPN GLY A 1 UNP Q06124 EXPRESSION TAG SEQADV 7PPN SER A 2 UNP Q06124 EXPRESSION TAG SEQADV 7PPN GLY A 3 UNP Q06124 EXPRESSION TAG SEQADV 7PPN SER A 4 UNP Q06124 EXPRESSION TAG SEQADV 7PPN GLY A 74 UNP Q06124 LINKER SEQADV 7PPN SER A 75 UNP Q06124 LINKER SEQADV 7PPN SER A 76 UNP Q06124 LINKER SEQADV 7PPN GLY A 77 UNP Q06124 LINKER SEQADV 7PPN SER A 213 UNP Q06124 CYS 459 ENGINEERED MUTATION SEQRES 1 A 282 GLY SER GLY SER GLY PHE TRP GLU GLU PHE GLU THR LEU SEQRES 2 A 282 GLN GLN GLN GLU CYS LYS LEU LEU TYR SER ARG LYS GLU SEQRES 3 A 282 GLY GLN ARG GLN GLU ASN LYS ASN LYS ASN ARG TYR LYS SEQRES 4 A 282 ASN ILE LEU PRO PHE ASP HIS THR ARG VAL VAL LEU HIS SEQRES 5 A 282 ASP GLY ASP PRO ASN GLU PRO VAL SER ASP TYR ILE ASN SEQRES 6 A 282 ALA ASN ILE ILE MET PRO GLU PHE GLY SER SER GLY LYS SEQRES 7 A 282 LYS SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN THR SEQRES 8 A 282 VAL ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SER SEQRES 9 A 282 ARG VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG GLY SEQRES 10 A 282 LYS SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR ALA SEQRES 11 A 282 LEU LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL LYS SEQRES 12 A 282 GLU SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU LYS SEQRES 13 A 282 LEU SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR VAL SEQRES 14 A 282 TRP GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY VAL SEQRES 15 A 282 PRO SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU GLU SEQRES 16 A 282 VAL HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY PRO SEQRES 17 A 282 VAL VAL VAL HIS SER SER ALA GLY ILE GLY ARG THR GLY SEQRES 18 A 282 THR PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE ARG SEQRES 19 A 282 GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS THR SEQRES 20 A 282 ILE GLN MET VAL ARG SER GLN ARG SER GLY MET VAL GLN SEQRES 21 A 282 THR GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL GLN SEQRES 22 A 282 HIS TYR ILE GLU THR LEU GLN ARG ARG SEQRES 1 B 16 ARG SER ARG LEU LEU HIS SER ASP PTR MET ASN MET TPO SEQRES 2 B 16 PRO ARG ARG MODRES 7PPN PTR B 191 TYR MODIFIED RESIDUE HET PTR B 191 16 HET GOL A 301 6 HETNAM PTR O-PHOSPHOTYROSINE HETNAM GOL GLYCEROL HETSYN PTR PHOSPHONOTYROSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PTR C9 H12 N O6 P FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *50(H2 O) HELIX 1 AA1 GLY A 5 GLU A 17 1 13 HELIX 2 AA2 ARG A 24 ARG A 29 1 6 HELIX 3 AA3 GLN A 30 ASN A 36 5 7 HELIX 4 AA4 THR A 91 ASN A 103 1 13 HELIX 5 AA5 PRO A 186 ILE A 203 1 18 HELIX 6 AA6 ILE A 217 GLY A 237 1 21 HELIX 7 AA7 ASP A 243 SER A 253 1 11 HELIX 8 AA8 THR A 261 ARG A 281 1 21 SHEET 1 AA1 8 ALA A 66 ILE A 69 0 SHEET 2 AA1 8 TYR A 81 GLN A 85 -1 O TYR A 81 N ILE A 69 SHEET 3 AA1 8 VAL A 209 SER A 213 1 O VAL A 211 N ILE A 82 SHEET 4 AA1 8 VAL A 106 MET A 109 1 N VAL A 108 O VAL A 210 SHEET 5 AA1 8 ARG A 167 PHE A 174 1 O TYR A 172 N ILE A 107 SHEET 6 AA1 8 TYR A 150 LYS A 159 -1 N LEU A 155 O VAL A 169 SHEET 7 AA1 8 MET A 137 ALA A 146 -1 N ARG A 138 O SER A 158 SHEET 8 AA1 8 LEU A 131 TYR A 134 -1 N TYR A 134 O MET A 137 SHEET 1 AA2 2 VAL A 114 GLU A 115 0 SHEET 2 AA2 2 LYS A 118 SER A 119 -1 O LYS A 118 N GLU A 115 LINK C ASP B 190 N PTR B 191 1555 1555 1.33 LINK C PTR B 191 N MET B 192 1555 1555 1.32 CRYST1 54.190 82.363 147.760 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018454 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006768 0.00000