HEADER CARBOHYDRATE 21-SEP-21 7PR7 TITLE CRYSTAL STRUCTURE OF HUMAN HEPARANASE IN COMPLEX WITH COVALENT TITLE 2 INHIBITOR VL166 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARANASE 50 KDA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEPARANASE 8 KDA SUBUNIT; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HPSE, HEP, HPA, HPA1, HPR1, HPSE1, HSE1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HPSE, HEP, HPA, HPA1, HPR1, HPSE1, HSE1; SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS GLYCOSIDE HYDROLASE, CARBOHYDRATE, GLUCURONIDASE, GH79, HEPARAN KEYWDS 2 SULFATE EXPDTA X-RAY DIFFRACTION AUTHOR L.WU,Z.ARMSTRONG,G.J.DAVIES REVDAT 3 20-NOV-24 7PR7 1 REMARK REVDAT 2 31-JAN-24 7PR7 1 REMARK REVDAT 1 03-AUG-22 7PR7 0 JRNL AUTH C.DE BOER,Z.ARMSTRONG,V.A.J.LIT,U.BARASH,G.RUIJGROK, JRNL AUTH 2 I.BOYANGO,M.M.WEITZENBERG,S.P.SCHRODER,A.J.C.SARRIS, JRNL AUTH 3 N.J.MEEUWENOORD,P.BULE,Y.KAYAL,N.ILAN,J.D.C.CODEE, JRNL AUTH 4 I.VLODAVSKY,H.S.OVERKLEEFT,G.J.DAVIES,L.WU JRNL TITL MECHANISM-BASED HEPARANASE INHIBITORS REDUCE CANCER JRNL TITL 2 METASTASIS IN VIVO. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 67119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35881786 JRNL DOI 10.1073/PNAS.2203167119 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 78643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.018 REMARK 3 FREE R VALUE TEST SET COUNT : 3946 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5490 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 274 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3643 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.42200 REMARK 3 B22 (A**2) : -0.91800 REMARK 3 B33 (A**2) : -0.70600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.18600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.795 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3898 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3735 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5286 ; 1.784 ; 1.683 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8624 ; 1.434 ; 1.609 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 6.805 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;32.727 ;21.858 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 654 ;12.812 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.983 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 501 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4312 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 897 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 725 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 49 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1914 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 231 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1859 ; 2.789 ; 3.129 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1858 ; 2.785 ; 3.126 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2329 ; 3.803 ; 4.680 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2330 ; 3.804 ; 4.683 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2039 ; 4.111 ; 3.676 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2040 ; 4.110 ; 3.676 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2957 ; 6.141 ; 5.316 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2958 ; 6.140 ; 5.317 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7PR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292118203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78665 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 52.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 1.34100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5E8M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 5.5, 0.1 M MGCL2, 17% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.50500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 391 HN2 NDG D 2 1.34 REMARK 500 H ASP B 37 O HOH B 202 1.36 REMARK 500 HE21 GLN B 46 O HOH B 201 1.48 REMARK 500 HH21 ARG A 307 O1 EDO A 605 1.58 REMARK 500 HD21 ASN A 178 O HOH A 704 1.60 REMARK 500 HH22 ARG A 272 O HOH A 702 1.60 REMARK 500 O HOH B 205 O HOH B 237 1.84 REMARK 500 NE2 GLN B 46 O HOH B 201 2.00 REMARK 500 O HOH A 877 O HOH A 895 2.10 REMARK 500 N ASP B 37 O HOH B 202 2.14 REMARK 500 O HOH A 849 O HOH A 924 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 343 CD GLU A 343 OE2 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 374 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 196 37.05 -92.43 REMARK 500 THR A 333 -47.33 -132.89 REMARK 500 LEU A 355 -52.63 -127.23 REMARK 500 ASN A 390 16.83 -142.89 REMARK 500 LEU A 419 -159.12 -118.53 REMARK 500 PRO A 469 34.69 -97.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 7PR7 A 160 543 UNP Q9Y251 HPSE_HUMAN 160 543 DBREF 7PR7 B 36 109 UNP Q9Y251 HPSE_HUMAN 36 109 SEQADV 7PR7 LYS A 159 UNP Q9Y251 EXPRESSION TAG SEQADV 7PR7 ARG A 307 UNP Q9Y251 LYS 307 VARIANT SEQRES 1 A 385 LYS PHE LYS ASN SER THR TYR SER ARG SER SER VAL ASP SEQRES 2 A 385 VAL LEU TYR THR PHE ALA ASN CYS SER GLY LEU ASP LEU SEQRES 3 A 385 ILE PHE GLY LEU ASN ALA LEU LEU ARG THR ALA ASP LEU SEQRES 4 A 385 GLN TRP ASN SER SER ASN ALA GLN LEU LEU LEU ASP TYR SEQRES 5 A 385 CYS SER SER LYS GLY TYR ASN ILE SER TRP GLU LEU GLY SEQRES 6 A 385 ASN GLU PRO ASN SER PHE LEU LYS LYS ALA ASP ILE PHE SEQRES 7 A 385 ILE ASN GLY SER GLN LEU GLY GLU ASP PHE ILE GLN LEU SEQRES 8 A 385 HIS LYS LEU LEU ARG LYS SER THR PHE LYS ASN ALA LYS SEQRES 9 A 385 LEU TYR GLY PRO ASP VAL GLY GLN PRO ARG ARG LYS THR SEQRES 10 A 385 ALA LYS MET LEU LYS SER PHE LEU LYS ALA GLY GLY GLU SEQRES 11 A 385 VAL ILE ASP SER VAL THR TRP HIS HIS TYR TYR LEU ASN SEQRES 12 A 385 GLY ARG THR ALA THR ARG GLU ASP PHE LEU ASN PRO ASP SEQRES 13 A 385 VAL LEU ASP ILE PHE ILE SER SER VAL GLN LYS VAL PHE SEQRES 14 A 385 GLN VAL VAL GLU SER THR ARG PRO GLY LYS LYS VAL TRP SEQRES 15 A 385 LEU GLY GLU THR SER SER ALA TYR GLY GLY GLY ALA PRO SEQRES 16 A 385 LEU LEU SER ASP THR PHE ALA ALA GLY PHE MET TRP LEU SEQRES 17 A 385 ASP LYS LEU GLY LEU SER ALA ARG MET GLY ILE GLU VAL SEQRES 18 A 385 VAL MET ARG GLN VAL PHE PHE GLY ALA GLY ASN TYR HIS SEQRES 19 A 385 LEU VAL ASP GLU ASN PHE ASP PRO LEU PRO ASP TYR TRP SEQRES 20 A 385 LEU SER LEU LEU PHE LYS LYS LEU VAL GLY THR LYS VAL SEQRES 21 A 385 LEU MET ALA SER VAL GLN GLY SER LYS ARG ARG LYS LEU SEQRES 22 A 385 ARG VAL TYR LEU HIS CYS THR ASN THR ASP ASN PRO ARG SEQRES 23 A 385 TYR LYS GLU GLY ASP LEU THR LEU TYR ALA ILE ASN LEU SEQRES 24 A 385 HIS ASN VAL THR LYS TYR LEU ARG LEU PRO TYR PRO PHE SEQRES 25 A 385 SER ASN LYS GLN VAL ASP LYS TYR LEU LEU ARG PRO LEU SEQRES 26 A 385 GLY PRO HIS GLY LEU LEU SER LYS SER VAL GLN LEU ASN SEQRES 27 A 385 GLY LEU THR LEU LYS MET VAL ASP ASP GLN THR LEU PRO SEQRES 28 A 385 PRO LEU MET GLU LYS PRO LEU ARG PRO GLY SER SER LEU SEQRES 29 A 385 GLY LEU PRO ALA PHE SER TYR SER PHE PHE VAL ILE ARG SEQRES 30 A 385 ASN ALA LYS VAL ALA ALA CYS ILE SEQRES 1 B 74 GLN ASP VAL VAL ASP LEU ASP PHE PHE THR GLN GLU PRO SEQRES 2 B 74 LEU HIS LEU VAL SER PRO SER PHE LEU SER VAL THR ILE SEQRES 3 B 74 ASP ALA ASN LEU ALA THR ASP PRO ARG PHE LEU ILE LEU SEQRES 4 B 74 LEU GLY SER PRO LYS LEU ARG THR LEU ALA ARG GLY LEU SEQRES 5 B 74 SER PRO ALA TYR LEU ARG PHE GLY GLY THR LYS THR ASP SEQRES 6 B 74 PHE LEU ILE PHE ASP PRO LYS LYS GLU HET NAG C 1 27 HET FUC C 2 21 HET 8I4 D 1 22 HET NDG D 2 28 HET NAG A 601 28 HET NAG A 602 28 HET NAG A 603 28 HET EDO A 604 10 HET EDO A 605 10 HET EDO A 606 10 HET EDO A 607 10 HET EDO A 608 10 HET EDO A 609 10 HET EDO A 610 10 HET CL A 611 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM 8I4 (2R,3S,5R,6R)-2,3,4,5,6-PENTAKIS(OXIDANYL)CYCLOHEXANE- HETNAM 2 8I4 1-CARBOXYLIC ACID HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN 8I4 (2R)-5-[(E)-2-(2,4-DINITROPHENYL)ETHENYL]-2-[(1R)-2- HETSYN 2 8I4 OXIDANYL-2-OXIDANYLIDENE-1-(2-THIOPHEN-2- HETSYN 3 8I4 YLETHANOYLAMINO)ETHYL]-3,6-DIHYDRO-2H-1,3-THIAZINE-4- HETSYN 4 8I4 CARBOXYLIC ACID HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 4 8I4 C7 H12 O7 FORMUL 4 NDG C8 H15 N O6 FORMUL 8 EDO 7(C2 H6 O2) FORMUL 15 CL CL 1- FORMUL 16 HOH *324(H2 O) HELIX 1 AA1 SER A 166 SER A 180 1 15 HELIX 2 AA2 SER A 201 LYS A 214 1 14 HELIX 3 AA3 GLU A 225 ASN A 227 5 3 HELIX 4 AA4 SER A 228 ASP A 234 1 7 HELIX 5 AA5 ASN A 238 LYS A 255 1 18 HELIX 6 AA6 ARG A 272 GLY A 287 1 16 HELIX 7 AA7 THR A 306 LEU A 311 1 6 HELIX 8 AA8 ASN A 312 SER A 332 1 21 HELIX 9 AA9 THR A 358 ALA A 360 5 3 HELIX 10 AB1 ALA A 361 GLY A 376 1 16 HELIX 11 AB2 LEU A 401 LEU A 413 1 13 HELIX 12 AB3 HIS A 486 SER A 490 5 5 HELIX 13 AB4 VAL A 539 ILE A 543 5 5 HELIX 14 AB5 ASP B 62 ASP B 68 5 7 HELIX 15 AB6 ARG B 70 SER B 77 1 8 HELIX 16 AB7 SER B 77 LEU B 87 1 11 HELIX 17 AB8 GLY B 96 ASP B 100 5 5 SHEET 1 AA1 2 SER A 163 TYR A 165 0 SHEET 2 AA1 2 LEU B 102 PHE B 104 1 O ILE B 103 N SER A 163 SHEET 1 AA2 8 SER A 219 LEU A 222 0 SHEET 2 AA2 8 LEU A 182 LEU A 188 1 N PHE A 186 O SER A 219 SHEET 3 AA2 8 ALA B 90 PHE B 94 1 O PHE B 94 N ILE A 185 SHEET 4 AA2 8 LEU B 57 ILE B 61 1 N ILE B 61 O ARG B 93 SHEET 5 AA2 8 VAL A 379 ARG A 382 1 N VAL A 380 O SER B 58 SHEET 6 AA2 8 LYS A 338 TYR A 348 1 N LEU A 341 O VAL A 379 SHEET 7 AA2 8 SER A 292 ASN A 301 1 N VAL A 293 O TRP A 340 SHEET 8 AA2 8 TYR A 264 VAL A 268 1 N VAL A 268 O HIS A 296 SHEET 1 AA3 4 LEU A 498 THR A 499 0 SHEET 2 AA3 4 VAL A 493 LEU A 495 -1 N LEU A 495 O LEU A 498 SHEET 3 AA3 4 VAL A 475 PRO A 482 -1 N ARG A 481 O GLN A 494 SHEET 4 AA3 4 LYS A 514 PRO A 515 -1 O LYS A 514 N LYS A 477 SHEET 1 AA4 8 LEU A 498 THR A 499 0 SHEET 2 AA4 8 VAL A 493 LEU A 495 -1 N LEU A 495 O LEU A 498 SHEET 3 AA4 8 VAL A 475 PRO A 482 -1 N ARG A 481 O GLN A 494 SHEET 4 AA4 8 SER A 528 ILE A 534 -1 O VAL A 533 N ASP A 476 SHEET 5 AA4 8 LEU A 450 ASN A 456 -1 N ASN A 456 O SER A 528 SHEET 6 AA4 8 LEU A 431 THR A 438 -1 N HIS A 436 O THR A 451 SHEET 7 AA4 8 VAL A 414 VAL A 418 -1 N GLY A 415 O CYS A 437 SHEET 8 AA4 8 HIS B 50 LEU B 51 -1 O HIS B 50 N VAL A 418 SHEET 1 AA5 4 MET A 420 VAL A 423 0 SHEET 2 AA5 4 VAL B 38 PHE B 44 -1 O ASP B 42 N SER A 422 SHEET 3 AA5 4 LYS A 462 ARG A 465 1 N ARG A 465 O VAL B 39 SHEET 4 AA5 4 LEU A 522 LEU A 524 -1 O LEU A 522 N LEU A 464 SSBOND 1 CYS A 437 CYS A 542 1555 1555 2.07 LINK ND2 ASN A 162 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 200 C1 NAG A 602 1555 1555 1.45 LINK ND2 ASN A 238 C1 NAG A 603 1555 1555 1.45 LINK OE2 GLU A 343 C1 8I4 D 1 1555 1555 1.45 LINK ND2 ASN A 459 C1 NAG C 1 1555 1555 1.47 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.44 LINK O4 8I4 D 1 C1 NDG D 2 1555 1555 1.45 CISPEP 1 GLY A 265 PRO A 266 0 0.15 CISPEP 2 GLN A 383 VAL A 384 0 -3.69 CISPEP 3 TYR A 468 PRO A 469 0 0.92 CISPEP 4 GLY A 484 PRO A 485 0 7.91 CISPEP 5 SER B 88 PRO B 89 0 -0.87 CRYST1 46.400 71.010 79.230 90.00 95.14 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021552 0.000000 0.001939 0.00000 SCALE2 0.000000 0.014083 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012672 0.00000 CONECT 74 7517 CONECT 658 7545 CONECT 1247 7573 CONECT 2978 7472 CONECT 4482 6188 CONECT 4830 7419 CONECT 6188 4482 CONECT 7419 4830 7420 7430 7433 CONECT 7420 7419 7421 7427 7434 CONECT 7421 7420 7422 7428 7435 CONECT 7422 7421 7423 7429 7436 CONECT 7423 7422 7424 7430 7437 CONECT 7424 7423 7431 7438 7439 CONECT 7425 7426 7427 7432 CONECT 7426 7425 7440 7441 7442 CONECT 7427 7420 7425 7443 CONECT 7428 7421 7444 CONECT 7429 7422 7445 CONECT 7430 7419 7423 CONECT 7431 7424 7446 CONECT 7432 7425 CONECT 7433 7419 CONECT 7434 7420 CONECT 7435 7421 CONECT 7436 7422 CONECT 7437 7423 CONECT 7438 7424 CONECT 7439 7424 CONECT 7440 7426 CONECT 7441 7426 CONECT 7442 7426 CONECT 7443 7427 CONECT 7444 7428 CONECT 7445 7429 CONECT 7446 7431 7447 7455 7456 CONECT 7447 7446 7448 7452 7457 CONECT 7448 7447 7449 7453 7458 CONECT 7449 7448 7450 7454 7459 CONECT 7450 7449 7451 7455 7460 CONECT 7451 7450 7461 7462 7463 CONECT 7452 7447 7464 CONECT 7453 7448 7465 CONECT 7454 7449 7466 CONECT 7455 7446 7450 CONECT 7456 7446 CONECT 7457 7447 CONECT 7458 7448 CONECT 7459 7449 CONECT 7460 7450 CONECT 7461 7451 CONECT 7462 7451 CONECT 7463 7451 CONECT 7464 7452 CONECT 7465 7453 CONECT 7466 7454 CONECT 7467 7470 7473 7474 7479 CONECT 7468 7469 7474 7475 7480 CONECT 7469 7468 7477 7478 CONECT 7470 7467 7481 CONECT 7471 7474 7489 CONECT 7472 2978 7473 7475 7482 CONECT 7473 7467 7472 7476 7483 CONECT 7474 7467 7468 7471 7484 CONECT 7475 7468 7472 7485 7487 CONECT 7476 7473 7486 CONECT 7477 7469 CONECT 7478 7469 CONECT 7479 7467 CONECT 7480 7468 CONECT 7481 7470 CONECT 7482 7472 CONECT 7483 7473 CONECT 7484 7474 CONECT 7485 7475 CONECT 7486 7476 CONECT 7487 7475 7488 CONECT 7488 7487 CONECT 7489 7471 7490 7497 7503 CONECT 7490 7489 7491 7502 7504 CONECT 7491 7490 7492 7498 7505 CONECT 7492 7491 7493 7499 7506 CONECT 7493 7492 7494 7497 7507 CONECT 7494 7493 7500 7508 7509 CONECT 7495 7496 7501 7502 CONECT 7496 7495 7510 7511 7512 CONECT 7497 7489 7493 CONECT 7498 7491 7513 CONECT 7499 7492 7514 CONECT 7500 7494 7515 CONECT 7501 7495 CONECT 7502 7490 7495 7516 CONECT 7503 7489 CONECT 7504 7490 CONECT 7505 7491 CONECT 7506 7492 CONECT 7507 7493 CONECT 7508 7494 CONECT 7509 7494 CONECT 7510 7496 CONECT 7511 7496 CONECT 7512 7496 CONECT 7513 7498 CONECT 7514 7499 CONECT 7515 7500 CONECT 7516 7502 CONECT 7517 74 7518 7528 7531 CONECT 7518 7517 7519 7525 7532 CONECT 7519 7518 7520 7526 7533 CONECT 7520 7519 7521 7527 7534 CONECT 7521 7520 7522 7528 7535 CONECT 7522 7521 7529 7536 7537 CONECT 7523 7524 7525 7530 CONECT 7524 7523 7538 7539 7540 CONECT 7525 7518 7523 7541 CONECT 7526 7519 7542 CONECT 7527 7520 7543 CONECT 7528 7517 7521 CONECT 7529 7522 7544 CONECT 7530 7523 CONECT 7531 7517 CONECT 7532 7518 CONECT 7533 7519 CONECT 7534 7520 CONECT 7535 7521 CONECT 7536 7522 CONECT 7537 7522 CONECT 7538 7524 CONECT 7539 7524 CONECT 7540 7524 CONECT 7541 7525 CONECT 7542 7526 CONECT 7543 7527 CONECT 7544 7529 CONECT 7545 658 7546 7556 7559 CONECT 7546 7545 7547 7553 7560 CONECT 7547 7546 7548 7554 7561 CONECT 7548 7547 7549 7555 7562 CONECT 7549 7548 7550 7556 7563 CONECT 7550 7549 7557 7564 7565 CONECT 7551 7552 7553 7558 CONECT 7552 7551 7566 7567 7568 CONECT 7553 7546 7551 7569 CONECT 7554 7547 7570 CONECT 7555 7548 7571 CONECT 7556 7545 7549 CONECT 7557 7550 7572 CONECT 7558 7551 CONECT 7559 7545 CONECT 7560 7546 CONECT 7561 7547 CONECT 7562 7548 CONECT 7563 7549 CONECT 7564 7550 CONECT 7565 7550 CONECT 7566 7552 CONECT 7567 7552 CONECT 7568 7552 CONECT 7569 7553 CONECT 7570 7554 CONECT 7571 7555 CONECT 7572 7557 CONECT 7573 1247 7574 7584 7587 CONECT 7574 7573 7575 7581 7588 CONECT 7575 7574 7576 7582 7589 CONECT 7576 7575 7577 7583 7590 CONECT 7577 7576 7578 7584 7591 CONECT 7578 7577 7585 7592 7593 CONECT 7579 7580 7581 7586 CONECT 7580 7579 7594 7595 7596 CONECT 7581 7574 7579 7597 CONECT 7582 7575 7598 CONECT 7583 7576 7599 CONECT 7584 7573 7577 CONECT 7585 7578 7600 CONECT 7586 7579 CONECT 7587 7573 CONECT 7588 7574 CONECT 7589 7575 CONECT 7590 7576 CONECT 7591 7577 CONECT 7592 7578 CONECT 7593 7578 CONECT 7594 7580 CONECT 7595 7580 CONECT 7596 7580 CONECT 7597 7581 CONECT 7598 7582 CONECT 7599 7583 CONECT 7600 7585 CONECT 7601 7602 7603 7605 7606 CONECT 7602 7601 7607 CONECT 7603 7601 7604 7608 7609 CONECT 7604 7603 7610 CONECT 7605 7601 CONECT 7606 7601 CONECT 7607 7602 CONECT 7608 7603 CONECT 7609 7603 CONECT 7610 7604 CONECT 7611 7612 7613 7615 7616 CONECT 7612 7611 7617 CONECT 7613 7611 7614 7618 7619 CONECT 7614 7613 7620 CONECT 7615 7611 CONECT 7616 7611 CONECT 7617 7612 CONECT 7618 7613 CONECT 7619 7613 CONECT 7620 7614 CONECT 7621 7622 7623 7625 7626 CONECT 7622 7621 7627 CONECT 7623 7621 7624 7628 7629 CONECT 7624 7623 7630 CONECT 7625 7621 CONECT 7626 7621 CONECT 7627 7622 CONECT 7628 7623 CONECT 7629 7623 CONECT 7630 7624 CONECT 7631 7632 7633 7635 7636 CONECT 7632 7631 7637 CONECT 7633 7631 7634 7638 7639 CONECT 7634 7633 7640 CONECT 7635 7631 CONECT 7636 7631 CONECT 7637 7632 CONECT 7638 7633 CONECT 7639 7633 CONECT 7640 7634 CONECT 7641 7642 7643 7645 7646 CONECT 7642 7641 7647 CONECT 7643 7641 7644 7648 7649 CONECT 7644 7643 7650 CONECT 7645 7641 CONECT 7646 7641 CONECT 7647 7642 CONECT 7648 7643 CONECT 7649 7643 CONECT 7650 7644 CONECT 7651 7652 7653 7655 7656 CONECT 7652 7651 7657 CONECT 7653 7651 7654 7658 7659 CONECT 7654 7653 7660 CONECT 7655 7651 CONECT 7656 7651 CONECT 7657 7652 CONECT 7658 7653 CONECT 7659 7653 CONECT 7660 7654 CONECT 7661 7662 7663 7665 7666 CONECT 7662 7661 7667 CONECT 7663 7661 7664 7668 7669 CONECT 7664 7663 7670 CONECT 7665 7661 CONECT 7666 7661 CONECT 7667 7662 CONECT 7668 7663 CONECT 7669 7663 CONECT 7670 7664 MASTER 312 0 15 17 26 0 0 6 4089 2 259 36 END