data_7PRD # _entry.id 7PRD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7PRD pdb_00007prd 10.2210/pdb7prd/pdb WWPDB D_1292118143 ? ? BMRB 34668 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of the chimeric Nrd1-Nab3 heterodimerization domains' _pdbx_database_related.db_id 34668 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7PRD _pdbx_database_status.recvd_initial_deposition_date 2021-09-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chaves-Arquero, B.' 1 0000-0002-2761-2336 'Martinez-Lumbreras, S.' 2 0000-0002-8617-0566 'Perez-Canadillas, J.M.' 3 0000-0002-8266-5502 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Life Sci Alliance' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2575-1077 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 5 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural basis of Nrd1-Nab3 heterodimerization.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.26508/lsa.202101252 _citation.pdbx_database_id_PubMed 35022249 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chaves-Arquero, B.' 1 ? primary 'Martinez-Lumbreras, S.' 2 ? primary 'Camero, S.' 3 ? primary 'Santiveri, C.M.' 4 ? primary 'Mirassou, Y.' 5 ? primary 'Campos-Olivas, R.' 6 ? primary 'Jimenez, M.A.' 7 ? primary 'Calvo, O.' 8 ? primary 'Perez-Canadillas, J.M.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Protein NRD1,HLJ1_G0022400.mRNA.1.CDS.1' _entity.formula_weight 13943.856 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TANTASQQLSLDPKQRSKQILSNLKKSPPLNLNISLPTDLTSTDPAKQQAALFQVIAALQKHFKTNMENVNYDLLQKQVK YIMDSNMLNLPQFQHLPQEEKMSAILAMLNSNSDTALSVPPHDST ; _entity_poly.pdbx_seq_one_letter_code_can ;TANTASQQLSLDPKQRSKQILSNLKKSPPLNLNISLPTDLTSTDPAKQQAALFQVIAALQKHFKTNMENVNYDLLQKQVK YIMDSNMLNLPQFQHLPQEEKMSAILAMLNSNSDTALSVPPHDST ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 ALA n 1 3 ASN n 1 4 THR n 1 5 ALA n 1 6 SER n 1 7 GLN n 1 8 GLN n 1 9 LEU n 1 10 SER n 1 11 LEU n 1 12 ASP n 1 13 PRO n 1 14 LYS n 1 15 GLN n 1 16 ARG n 1 17 SER n 1 18 LYS n 1 19 GLN n 1 20 ILE n 1 21 LEU n 1 22 SER n 1 23 ASN n 1 24 LEU n 1 25 LYS n 1 26 LYS n 1 27 SER n 1 28 PRO n 1 29 PRO n 1 30 LEU n 1 31 ASN n 1 32 LEU n 1 33 ASN n 1 34 ILE n 1 35 SER n 1 36 LEU n 1 37 PRO n 1 38 THR n 1 39 ASP n 1 40 LEU n 1 41 THR n 1 42 SER n 1 43 THR n 1 44 ASP n 1 45 PRO n 1 46 ALA n 1 47 LYS n 1 48 GLN n 1 49 GLN n 1 50 ALA n 1 51 ALA n 1 52 LEU n 1 53 PHE n 1 54 GLN n 1 55 VAL n 1 56 ILE n 1 57 ALA n 1 58 ALA n 1 59 LEU n 1 60 GLN n 1 61 LYS n 1 62 HIS n 1 63 PHE n 1 64 LYS n 1 65 THR n 1 66 ASN n 1 67 MET n 1 68 GLU n 1 69 ASN n 1 70 VAL n 1 71 ASN n 1 72 TYR n 1 73 ASP n 1 74 LEU n 1 75 LEU n 1 76 GLN n 1 77 LYS n 1 78 GLN n 1 79 VAL n 1 80 LYS n 1 81 TYR n 1 82 ILE n 1 83 MET n 1 84 ASP n 1 85 SER n 1 86 ASN n 1 87 MET n 1 88 LEU n 1 89 ASN n 1 90 LEU n 1 91 PRO n 1 92 GLN n 1 93 PHE n 1 94 GLN n 1 95 HIS n 1 96 LEU n 1 97 PRO n 1 98 GLN n 1 99 GLU n 1 100 GLU n 1 101 LYS n 1 102 MET n 1 103 SER n 1 104 ALA n 1 105 ILE n 1 106 LEU n 1 107 ALA n 1 108 MET n 1 109 LEU n 1 110 ASN n 1 111 SER n 1 112 ASN n 1 113 SER n 1 114 ASP n 1 115 THR n 1 116 ALA n 1 117 LEU n 1 118 SER n 1 119 VAL n 1 120 PRO n 1 121 PRO n 1 122 HIS n 1 123 ASP n 1 124 SER n 1 125 THR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 65 ;Baker's yeast ; ? 'SCNYR20_0008007600, SCP684_0008007200' ? ? ? ? ? ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 66 125 ;Baker's yeast ; ? PACBIOSEQ_LOCUS5883 ? ? ? ? ? ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP A0A6V8SAW3_YEASX A0A6V8SAW3 ? 1 TANTASQQLSLDPKQRSKQILSNLKKSPPLNLNISLPTDLTSTDPAKQQAALFQVIAALQKHFKT 158 2 UNP A0A6L0ZXA8_YEASX A0A6L0ZXA8 ? 1 NMENVNYDLLQKQVKYIMDSNMLNLPQFQHLPQEEKMSAILAMLNSNSDTALSVPPHDST 202 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7PRD A 1 ? 65 ? A0A6V8SAW3 158 ? 222 ? 158 222 2 2 7PRD A 66 ? 125 ? A0A6L0ZXA8 202 ? 261 ? 223 282 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 2 '2D 1H-13C HSQC' 1 isotropic 3 1 1 '3D HNCA' 1 isotropic 4 1 1 '3D HNCO' 1 isotropic 5 1 1 '3D CBCA(CO)NH' 1 isotropic 6 1 1 '3D HNCACB' 1 isotropic 7 1 2 '3D HCCH-TOCSY' 1 isotropic 8 1 4 '2D 1H-1H NOESY' 1 isotropic 9 1 5 '2D 1H-1H NOESY' 1 isotropic 10 1 1 '3D 1H-15N NOESY' 1 isotropic 11 1 3 '3D 1H-13C NOESY' 1 isotropic 12 1 3 '3D 1H-13C HSQC NOESY 1H-13C HSQC' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 5.1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 35 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label Conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ? '90% H2O/10% D2O' CN_H2O solution ? 2 ? '100% D2O' CN_D2O solution ? 3 ? '100% D2O' methyl-lab solution ? 4 ? '90% H2O/10% D2O' na_H2O solution ? 5 ? '100% D2O' na_D2O solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 7PRD _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 7PRD _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7PRD _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria medoid # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 'chemical shift assignment' 'CcpNmr Analysis' ? CCPN 4 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7PRD _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7PRD _struct.title 'Solution structure of the chimeric Nrd1-Nab3 heterodimerization domains' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7PRD _struct_keywords.text 'Transcription termination, NNS pathway, Nab3, Nrd1, heterodimerization, chimera, yeast, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 12 ? ASN A 23 ? ASP A 169 ASN A 180 1 ? 12 HELX_P HELX_P2 AA2 PRO A 37 ? SER A 42 ? PRO A 194 SER A 199 5 ? 6 HELX_P HELX_P3 AA3 ASP A 44 ? THR A 65 ? ASP A 201 THR A 222 1 ? 22 HELX_P HELX_P4 AA4 ASN A 71 ? ASN A 86 ? ASN A 228 ASN A 243 1 ? 16 HELX_P HELX_P5 AA5 LEU A 90 ? LEU A 96 ? LEU A 247 LEU A 253 1 ? 7 HELX_P HELX_P6 AA6 PRO A 97 ? ASN A 110 ? PRO A 254 ASN A 267 1 ? 14 HELX_P HELX_P7 AA7 THR A 115 ? VAL A 119 ? THR A 272 VAL A 276 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 7PRD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 158 158 THR THR A . n A 1 2 ALA 2 159 159 ALA ALA A . n A 1 3 ASN 3 160 160 ASN ASN A . n A 1 4 THR 4 161 161 THR THR A . n A 1 5 ALA 5 162 162 ALA ALA A . n A 1 6 SER 6 163 163 SER SER A . n A 1 7 GLN 7 164 164 GLN GLN A . n A 1 8 GLN 8 165 165 GLN GLN A . n A 1 9 LEU 9 166 166 LEU LEU A . n A 1 10 SER 10 167 167 SER SER A . n A 1 11 LEU 11 168 168 LEU LEU A . n A 1 12 ASP 12 169 169 ASP ASP A . n A 1 13 PRO 13 170 170 PRO PRO A . n A 1 14 LYS 14 171 171 LYS LYS A . n A 1 15 GLN 15 172 172 GLN GLN A . n A 1 16 ARG 16 173 173 ARG ARG A . n A 1 17 SER 17 174 174 SER SER A . n A 1 18 LYS 18 175 175 LYS LYS A . n A 1 19 GLN 19 176 176 GLN GLN A . n A 1 20 ILE 20 177 177 ILE ILE A . n A 1 21 LEU 21 178 178 LEU LEU A . n A 1 22 SER 22 179 179 SER SER A . n A 1 23 ASN 23 180 180 ASN ASN A . n A 1 24 LEU 24 181 181 LEU LEU A . n A 1 25 LYS 25 182 182 LYS LYS A . n A 1 26 LYS 26 183 183 LYS LYS A . n A 1 27 SER 27 184 184 SER SER A . n A 1 28 PRO 28 185 185 PRO PRO A . n A 1 29 PRO 29 186 186 PRO PRO A . n A 1 30 LEU 30 187 187 LEU LEU A . n A 1 31 ASN 31 188 188 ASN ASN A . n A 1 32 LEU 32 189 189 LEU LEU A . n A 1 33 ASN 33 190 190 ASN ASN A . n A 1 34 ILE 34 191 191 ILE ILE A . n A 1 35 SER 35 192 192 SER SER A . n A 1 36 LEU 36 193 193 LEU LEU A . n A 1 37 PRO 37 194 194 PRO PRO A . n A 1 38 THR 38 195 195 THR THR A . n A 1 39 ASP 39 196 196 ASP ASP A . n A 1 40 LEU 40 197 197 LEU LEU A . n A 1 41 THR 41 198 198 THR THR A . n A 1 42 SER 42 199 199 SER SER A . n A 1 43 THR 43 200 200 THR THR A . n A 1 44 ASP 44 201 201 ASP ASP A . n A 1 45 PRO 45 202 202 PRO PRO A . n A 1 46 ALA 46 203 203 ALA ALA A . n A 1 47 LYS 47 204 204 LYS LYS A . n A 1 48 GLN 48 205 205 GLN GLN A . n A 1 49 GLN 49 206 206 GLN GLN A . n A 1 50 ALA 50 207 207 ALA ALA A . n A 1 51 ALA 51 208 208 ALA ALA A . n A 1 52 LEU 52 209 209 LEU LEU A . n A 1 53 PHE 53 210 210 PHE PHE A . n A 1 54 GLN 54 211 211 GLN GLN A . n A 1 55 VAL 55 212 212 VAL VAL A . n A 1 56 ILE 56 213 213 ILE ILE A . n A 1 57 ALA 57 214 214 ALA ALA A . n A 1 58 ALA 58 215 215 ALA ALA A . n A 1 59 LEU 59 216 216 LEU LEU A . n A 1 60 GLN 60 217 217 GLN GLN A . n A 1 61 LYS 61 218 218 LYS LYS A . n A 1 62 HIS 62 219 219 HIS HIS A . n A 1 63 PHE 63 220 220 PHE PHE A . n A 1 64 LYS 64 221 221 LYS LYS A . n A 1 65 THR 65 222 222 THR THR A . n A 1 66 ASN 66 223 223 ASN ASN A . n A 1 67 MET 67 224 224 MET MET A . n A 1 68 GLU 68 225 225 GLU GLU A . n A 1 69 ASN 69 226 226 ASN ASN A . n A 1 70 VAL 70 227 227 VAL VAL A . n A 1 71 ASN 71 228 228 ASN ASN A . n A 1 72 TYR 72 229 229 TYR TYR A . n A 1 73 ASP 73 230 230 ASP ASP A . n A 1 74 LEU 74 231 231 LEU LEU A . n A 1 75 LEU 75 232 232 LEU LEU A . n A 1 76 GLN 76 233 233 GLN GLN A . n A 1 77 LYS 77 234 234 LYS LYS A . n A 1 78 GLN 78 235 235 GLN GLN A . n A 1 79 VAL 79 236 236 VAL VAL A . n A 1 80 LYS 80 237 237 LYS LYS A . n A 1 81 TYR 81 238 238 TYR TYR A . n A 1 82 ILE 82 239 239 ILE ILE A . n A 1 83 MET 83 240 240 MET MET A . n A 1 84 ASP 84 241 241 ASP ASP A . n A 1 85 SER 85 242 242 SER SER A . n A 1 86 ASN 86 243 243 ASN ASN A . n A 1 87 MET 87 244 244 MET MET A . n A 1 88 LEU 88 245 245 LEU LEU A . n A 1 89 ASN 89 246 246 ASN ASN A . n A 1 90 LEU 90 247 247 LEU LEU A . n A 1 91 PRO 91 248 248 PRO PRO A . n A 1 92 GLN 92 249 249 GLN GLN A . n A 1 93 PHE 93 250 250 PHE PHE A . n A 1 94 GLN 94 251 251 GLN GLN A . n A 1 95 HIS 95 252 252 HIS HIS A . n A 1 96 LEU 96 253 253 LEU LEU A . n A 1 97 PRO 97 254 254 PRO PRO A . n A 1 98 GLN 98 255 255 GLN GLN A . n A 1 99 GLU 99 256 256 GLU GLU A . n A 1 100 GLU 100 257 257 GLU GLU A . n A 1 101 LYS 101 258 258 LYS LYS A . n A 1 102 MET 102 259 259 MET MET A . n A 1 103 SER 103 260 260 SER SER A . n A 1 104 ALA 104 261 261 ALA ALA A . n A 1 105 ILE 105 262 262 ILE ILE A . n A 1 106 LEU 106 263 263 LEU LEU A . n A 1 107 ALA 107 264 264 ALA ALA A . n A 1 108 MET 108 265 265 MET MET A . n A 1 109 LEU 109 266 266 LEU LEU A . n A 1 110 ASN 110 267 267 ASN ASN A . n A 1 111 SER 111 268 268 SER SER A . n A 1 112 ASN 112 269 269 ASN ASN A . n A 1 113 SER 113 270 270 SER SER A . n A 1 114 ASP 114 271 271 ASP ASP A . n A 1 115 THR 115 272 272 THR THR A . n A 1 116 ALA 116 273 273 ALA ALA A . n A 1 117 LEU 117 274 274 LEU LEU A . n A 1 118 SER 118 275 275 SER SER A . n A 1 119 VAL 119 276 276 VAL VAL A . n A 1 120 PRO 120 277 277 PRO PRO A . n A 1 121 PRO 121 278 278 PRO PRO A . n A 1 122 HIS 122 279 279 HIS HIS A . n A 1 123 ASP 123 280 280 ASP ASP A . n A 1 124 SER 124 281 281 SER SER A . n A 1 125 THR 125 282 282 THR THR A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-01-12 2 'Structure model' 1 1 2022-01-26 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'sodium acetate' 10 ? mM 'natural abundance' 1 'sodium chloride' 25 ? mM 'natural abundance' 1 DTT 1 ? mM 'natural abundance' 1 'Nrd1-Nab3 chimera' 1000 ? uM '[U-100% 13C; U-100% 15N]' 2 'sodium acetate' 10 ? mM 'natural abundance' 2 'sodium chloride' 25 ? mM 'natural abundance' 2 DTT 1 ? mM 'natural abundance' 2 'Nrd1-Nab3 chimera' 1000 ? uM '[U-100% 13C; U-100% 15N]' 3 'sodium acetate' 10 ? mM 'natural abundance' 3 'sodium chloride' 25 ? mM 'natural abundance' 3 DTT 1 ? mM 'natural abundance' 3 'Nrd1-Nab3 chimera' 1000 ? uM '13C - methyl (IVL)' 4 'sodium acetate' 10 ? mM 'natural abundance' 4 'sodium chloride' 25 ? mM 'natural abundance' 4 DTT 1 ? mM 'natural abundance' 4 'Nrd1-Nab3 chimera' 1000 ? uM 'natural abundance' 5 'sodium acetate' 10 ? mM 'natural abundance' 5 'sodium chloride' 25 ? mM 'natural abundance' 5 DTT 1 ? mM 'natural abundance' 5 'Nrd1-Nab3 chimera' 1000 ? uM 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 199 ? ? -58.07 -177.96 2 1 ASN A 228 ? ? -57.32 98.23 3 1 THR A 272 ? ? -95.86 30.16 4 1 PRO A 278 ? ? -69.72 -168.92 5 2 THR A 161 ? ? -114.25 62.80 6 2 SER A 199 ? ? -63.28 -172.87 7 2 THR A 222 ? ? 173.86 158.98 8 2 GLU A 225 ? ? 77.90 105.22 9 2 THR A 272 ? ? -95.73 30.43 10 3 ASN A 190 ? ? 67.78 62.26 11 3 SER A 199 ? ? -63.58 -174.12 12 3 THR A 222 ? ? 177.83 145.82 13 3 ASN A 228 ? ? -56.12 98.01 14 3 PRO A 278 ? ? -69.71 -170.29 15 4 PRO A 186 ? ? -69.75 91.86 16 4 SER A 199 ? ? -65.43 -169.05 17 4 LYS A 221 ? ? -100.66 -62.68 18 4 THR A 222 ? ? 174.84 160.39 19 4 GLU A 225 ? ? 70.35 126.28 20 4 ASN A 226 ? ? -158.85 34.98 21 4 ALA A 273 ? ? -51.12 -74.42 22 4 LEU A 274 ? ? -139.09 -43.88 23 4 SER A 275 ? ? -48.96 165.09 24 4 SER A 281 ? ? -62.88 -177.74 25 5 SER A 199 ? ? -59.82 -177.40 26 5 LYS A 221 ? ? -98.92 39.15 27 5 GLU A 225 ? ? 37.17 66.14 28 5 ASN A 228 ? ? -66.03 91.57 29 5 SER A 268 ? ? -49.21 -74.63 30 5 PRO A 278 ? ? -69.76 96.48 31 6 ASN A 160 ? ? -62.53 -176.96 32 6 THR A 161 ? ? 37.42 43.42 33 6 ASN A 188 ? ? -99.02 39.50 34 6 SER A 199 ? ? -59.38 -172.99 35 6 LYS A 221 ? ? -101.70 48.70 36 6 ALA A 273 ? ? -60.01 -74.20 37 6 LEU A 274 ? ? -138.14 -50.70 38 7 THR A 200 ? ? 70.88 35.23 39 7 GLU A 225 ? ? 67.19 64.86 40 7 ASN A 228 ? ? -66.47 89.54 41 7 LEU A 274 ? ? -129.90 -52.88 42 7 SER A 275 ? ? -136.07 -76.24 43 8 PRO A 186 ? ? -69.78 -170.76 44 8 SER A 199 ? ? -58.43 -178.11 45 8 THR A 222 ? ? 171.94 144.51 46 8 ASN A 228 ? ? -51.09 103.08 47 9 LYS A 183 ? ? -91.13 56.57 48 9 SER A 199 ? ? -65.00 -175.40 49 9 THR A 222 ? ? 179.92 135.62 50 9 ASN A 228 ? ? -50.63 102.15 51 9 THR A 272 ? ? -94.10 30.07 52 9 HIS A 279 ? ? -67.71 90.37 53 10 LEU A 187 ? ? -172.94 114.03 54 10 ASN A 190 ? ? 66.53 68.11 55 10 SER A 199 ? ? -56.53 -177.85 56 10 THR A 222 ? ? 179.34 141.60 57 10 ASN A 228 ? ? -53.12 101.59 58 10 HIS A 252 ? ? -91.86 30.83 59 10 ALA A 273 ? ? -50.76 -75.32 60 10 LEU A 274 ? ? -139.25 -49.39 61 10 SER A 275 ? ? -49.28 165.90 62 11 SER A 163 ? ? -94.35 -66.51 63 11 LEU A 168 ? ? -131.74 -40.18 64 11 SER A 199 ? ? -60.57 -179.51 65 11 PHE A 220 ? ? -91.43 -63.79 66 11 THR A 222 ? ? -162.00 113.90 67 11 GLU A 225 ? ? 177.54 130.12 68 11 ASN A 226 ? ? 179.33 95.49 69 11 LEU A 247 ? ? -48.65 150.67 70 11 THR A 272 ? ? -94.53 30.41 71 11 VAL A 276 ? ? -53.24 109.65 72 12 LEU A 168 ? ? -132.37 -41.31 73 12 LEU A 189 ? ? -50.27 -76.51 74 12 SER A 199 ? ? -65.56 -168.39 75 12 LYS A 221 ? ? -93.50 -61.25 76 12 THR A 222 ? ? 172.50 153.17 77 12 ASN A 228 ? ? -53.87 100.48 78 12 THR A 272 ? ? -94.69 30.69 79 13 THR A 161 ? ? 37.20 44.05 80 13 PRO A 186 ? ? -69.76 -169.75 81 13 ASN A 188 ? ? 65.17 67.05 82 13 ILE A 191 ? ? -106.91 76.73 83 13 SER A 199 ? ? -62.14 -168.65 84 13 THR A 222 ? ? 176.21 161.20 85 13 GLU A 225 ? ? 69.77 90.78 86 13 THR A 272 ? ? -94.37 31.31 87 14 LYS A 182 ? ? -61.36 -166.63 88 14 SER A 199 ? ? -59.12 -172.09 89 14 GLU A 225 ? ? 175.37 131.76 90 14 ASN A 226 ? ? -179.02 34.16 91 14 LEU A 247 ? ? -49.81 151.30 92 14 THR A 272 ? ? -93.44 33.00 93 14 PRO A 278 ? ? -69.73 -174.65 94 15 LYS A 183 ? ? -88.08 49.66 95 15 ASN A 188 ? ? -112.29 64.66 96 15 SER A 199 ? ? -59.45 -172.05 97 15 THR A 222 ? ? 177.50 145.01 98 15 ASN A 228 ? ? -52.63 100.38 99 16 GLN A 164 ? ? 39.38 41.40 100 16 LEU A 181 ? ? -56.37 108.80 101 16 LYS A 183 ? ? -51.78 102.71 102 16 PRO A 186 ? ? -69.74 82.70 103 16 SER A 199 ? ? -60.12 -170.42 104 16 THR A 222 ? ? 174.75 159.96 105 16 GLU A 225 ? ? 72.54 106.66 106 16 PRO A 278 ? ? -69.75 -170.25 107 17 ASN A 188 ? ? -101.34 55.05 108 17 THR A 222 ? ? 176.94 140.41 109 17 GLU A 225 ? ? -48.66 164.62 110 17 ASN A 228 ? ? -56.66 98.57 111 17 HIS A 252 ? ? -93.25 30.30 112 17 SER A 268 ? ? -50.39 -74.47 113 17 PRO A 278 ? ? -69.78 -171.49 114 18 LYS A 182 ? ? 49.80 28.42 115 18 SER A 199 ? ? -81.24 37.00 116 18 THR A 200 ? ? 38.22 40.28 117 18 LYS A 221 ? ? -107.13 45.50 118 18 GLU A 225 ? ? 65.64 64.94 119 18 HIS A 252 ? ? -92.88 30.22 120 18 LEU A 274 ? ? -131.72 -56.73 121 18 HIS A 279 ? ? -170.95 131.97 122 19 SER A 199 ? ? -63.31 -169.47 123 19 THR A 222 ? ? -37.16 122.01 124 19 GLU A 225 ? ? 178.52 124.60 125 19 ASN A 226 ? ? 177.08 147.42 126 19 HIS A 252 ? ? -92.46 30.55 127 19 SER A 268 ? ? -50.40 -74.44 128 19 PRO A 278 ? ? -69.78 -170.05 129 19 ASP A 280 ? ? -54.23 -70.62 130 20 PRO A 186 ? ? -69.70 78.71 131 20 SER A 199 ? ? -62.93 -170.11 132 20 LYS A 221 ? ? -90.67 -61.32 133 20 THR A 222 ? ? 177.07 150.46 134 20 GLU A 225 ? ? -54.65 175.90 135 20 ASN A 228 ? ? -50.27 102.03 136 20 LEU A 247 ? ? -46.95 150.57 137 20 SER A 275 ? ? -50.15 98.68 # _pdbx_audit_support.funding_organization 'Autonomous Community of Madrid' _pdbx_audit_support.country Spain _pdbx_audit_support.grant_number BMD-3770 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #