HEADER HYDROLASE 29-SEP-21 7PUG TITLE GH115 ALPHA-1,2-GLUCURONIDASE IN COMPLEX WITH XYLOPENTAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLAN ALPHA-1,2-GLUCURONIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.131; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: A AND G IN THE N-TERMINAL ARE FROM THE VECTOR. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, GLUCURONIDASE, MULTIDOMAIN, HYDROLASE, XYLOOLIGOSACCHARIDE EXPDTA X-RAY DIFFRACTION AUTHOR C.WILKENS,J.P.MORTH,I.POLIKARPOV REVDAT 3 31-JAN-24 7PUG 1 REMARK REVDAT 2 25-MAY-22 7PUG 1 JRNL REVDAT 1 19-JAN-22 7PUG 0 JRNL AUTH C.WILKENS,M.VUILLEMIN,B.PILGAARD,I.POLIKARPOV,J.P.MORTH JRNL TITL A GH115 ALPHA-GLUCURONIDASE STRUCTURE REVEALS JRNL TITL 2 DIMERIZATION-MEDIATED SUBSTRATE BINDING AND A PROTON WIRE JRNL TITL 3 POTENTIALLY IMPORTANT FOR CATALYSIS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 78 658 2022 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 35503213 JRNL DOI 10.1107/S2059798322003527 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 51754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.2600 - 6.9700 1.00 3012 151 0.1823 0.1957 REMARK 3 2 6.9700 - 5.5300 1.00 2820 160 0.1672 0.2110 REMARK 3 3 5.5300 - 4.8300 1.00 2796 137 0.1274 0.1698 REMARK 3 4 4.8300 - 4.3900 1.00 2769 131 0.1153 0.1444 REMARK 3 5 4.3900 - 4.0800 1.00 2739 150 0.1283 0.1459 REMARK 3 6 4.0800 - 3.8400 1.00 2732 146 0.1369 0.1828 REMARK 3 7 3.8400 - 3.6400 1.00 2703 163 0.1447 0.1960 REMARK 3 8 3.6400 - 3.4900 1.00 2725 135 0.1633 0.2430 REMARK 3 9 3.4900 - 3.3500 1.00 2706 147 0.1993 0.2386 REMARK 3 10 3.3500 - 3.2400 1.00 2690 131 0.2439 0.2836 REMARK 3 11 3.2400 - 3.1300 1.00 2725 141 0.2330 0.2550 REMARK 3 12 3.1300 - 3.0400 1.00 2677 148 0.2188 0.2639 REMARK 3 13 3.0400 - 2.9600 1.00 2690 145 0.2238 0.2947 REMARK 3 14 2.9600 - 2.8900 1.00 2702 127 0.2659 0.3251 REMARK 3 15 2.8900 - 2.8300 1.00 2688 140 0.2939 0.3523 REMARK 3 16 2.8300 - 2.7700 1.00 2668 144 0.3728 0.4333 REMARK 3 17 2.7700 - 2.7100 1.00 2670 146 0.4349 0.4439 REMARK 3 18 2.7100 - 2.6600 1.00 2668 132 0.5222 0.5601 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6981 REMARK 3 ANGLE : 0.932 9480 REMARK 3 CHIRALITY : 0.056 1002 REMARK 3 PLANARITY : 0.008 1240 REMARK 3 DIHEDRAL : 21.544 2591 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1917 57.6372 145.9859 REMARK 3 T TENSOR REMARK 3 T11: 0.5147 T22: 0.9104 REMARK 3 T33: 0.6448 T12: 0.1887 REMARK 3 T13: 0.1266 T23: 0.1401 REMARK 3 L TENSOR REMARK 3 L11: 3.2514 L22: 2.6124 REMARK 3 L33: 2.6214 L12: 1.0527 REMARK 3 L13: -0.4578 L23: -0.1538 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: -0.4110 S13: -0.1907 REMARK 3 S21: 0.3094 S22: 0.1411 S23: 0.3161 REMARK 3 S31: 0.1480 S32: -0.3749 S33: -0.1477 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5341 63.5174 167.5086 REMARK 3 T TENSOR REMARK 3 T11: 1.2185 T22: 1.6028 REMARK 3 T33: 0.8384 T12: 0.1200 REMARK 3 T13: -0.1845 T23: -0.0863 REMARK 3 L TENSOR REMARK 3 L11: 1.1987 L22: 7.3435 REMARK 3 L33: 3.2512 L12: 0.3287 REMARK 3 L13: 1.8094 L23: -0.5228 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: -0.8349 S13: 0.1468 REMARK 3 S21: 1.2305 S22: 0.0175 S23: -0.7697 REMARK 3 S31: -0.2028 S32: 0.2224 S33: 0.0086 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 379 THROUGH 838 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.2490 57.4507 116.0364 REMARK 3 T TENSOR REMARK 3 T11: 0.4502 T22: 0.8898 REMARK 3 T33: 0.8248 T12: 0.1927 REMARK 3 T13: 0.0104 T23: 0.0847 REMARK 3 L TENSOR REMARK 3 L11: 1.3438 L22: 0.9829 REMARK 3 L33: 2.7954 L12: -0.1922 REMARK 3 L13: -0.6963 L23: -0.3575 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.1176 S13: -0.1192 REMARK 3 S21: -0.0620 S22: -0.1414 S23: -0.4008 REMARK 3 S31: 0.1303 S32: 0.7838 S33: 0.0540 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292118402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51774 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 65.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4C90 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2, 0.1 M HEPES PH 7.5 AND REMARK 280 28% PEG400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.93000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 181.86000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 136.39500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 227.32500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.46500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.93000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 181.86000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 227.32500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 136.39500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.46500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -280.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 74.31500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 128.71736 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 227.32500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1235 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 307 REMARK 465 MET A 308 REMARK 465 GLY A 309 REMARK 465 VAL A 310 REMARK 465 LYS A 311 REMARK 465 GLU A 312 REMARK 465 GLY A 313 REMARK 465 GLU A 314 REMARK 465 ASP A 315 REMARK 465 HIS A 316 REMARK 465 LEU A 317 REMARK 465 ILE A 839 REMARK 465 GLU A 840 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 822 O HOH A 1001 2.15 REMARK 500 OD1 ASN A 323 OH TYR A 362 2.16 REMARK 500 NZ LYS A 357 O HOH A 1002 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 61 67.56 -66.58 REMARK 500 GLU A 112 128.00 -179.74 REMARK 500 ALA A 144 24.18 -141.10 REMARK 500 ASP A 164 -155.86 63.32 REMARK 500 ALA A 181 -73.53 -66.90 REMARK 500 LYS A 193 32.95 -88.90 REMARK 500 MET A 250 44.42 71.24 REMARK 500 TRP A 267 52.41 71.20 REMARK 500 LYS A 288 152.14 -45.24 REMARK 500 ASP A 289 -2.36 71.57 REMARK 500 MET A 298 127.35 -171.97 REMARK 500 ARG A 299 -129.67 -111.53 REMARK 500 PRO A 305 -151.90 -91.34 REMARK 500 SER A 319 -150.03 -84.43 REMARK 500 ASP A 320 -107.33 93.61 REMARK 500 GLU A 344 -177.66 -69.62 REMARK 500 LYS A 357 -105.68 -14.48 REMARK 500 VAL A 359 -45.22 -147.41 REMARK 500 LEU A 365 10.63 -69.22 REMARK 500 TRP A 417 -61.67 -99.94 REMARK 500 ASP A 439 23.53 -146.74 REMARK 500 LEU A 449 -68.36 76.82 REMARK 500 PRO A 451 49.85 -98.48 REMARK 500 VAL A 508 138.26 -172.51 REMARK 500 ILE A 558 -60.98 -140.13 REMARK 500 VAL A 613 -56.60 -121.39 REMARK 500 LYS A 627 -18.60 -146.78 REMARK 500 SER A 632 -161.42 -128.22 REMARK 500 ASP A 635 35.98 -91.00 REMARK 500 ALA A 654 64.48 -111.35 REMARK 500 GLU A 682 -50.55 83.97 REMARK 500 TYR A 690 -9.50 67.68 REMARK 500 THR A 694 -128.01 -129.97 REMARK 500 ASP A 739 111.40 -179.53 REMARK 500 VAL A 773 -52.35 -120.86 REMARK 500 PHE A 774 -71.37 -52.21 REMARK 500 ARG A 781 -2.86 76.57 REMARK 500 MET A 829 157.42 86.32 REMARK 500 ILE A 837 -92.16 -113.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 301 GLY A 302 -148.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 914 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 416 O REMARK 620 2 ASP A 448 OD2 172.7 REMARK 620 3 HOH A1031 O 78.3 100.9 REMARK 620 4 HOH A1094 O 78.4 94.2 83.0 REMARK 620 5 HOH A1124 O 85.1 97.2 158.7 106.9 REMARK 620 6 HOH A1184 O 89.8 97.4 83.6 163.7 83.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 916 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 640 OD2 REMARK 620 2 HOH A1026 O 74.3 REMARK 620 3 HOH A1196 O 68.3 135.9 REMARK 620 4 HOH A1226 O 76.5 75.2 74.0 REMARK 620 5 HOH A1287 O 107.6 115.8 97.5 168.7 REMARK 620 N 1 2 3 4 DBREF 7PUG A -1 840 PDB 7PUG 7PUG -1 840 SEQRES 1 A 842 ALA GLY ASP ASN LYS GLY ILE THR TYR GLU GLU LEU ASN SEQRES 2 A 842 PRO GLU ARG PHE THR LEU LEU GLU LYS GLY THR PRO THR SEQRES 3 A 842 ASN ILE LEU ILE ASP GLU ASN GLU ASP GLN GLY VAL MET SEQRES 4 A 842 ILE ALA ALA THR ASN LEU SER GLU ASP PHE GLY ARG VAL SEQRES 5 A 842 SER GLY THR ASN ALA PRO LEU ILE PHE LEU PRO ASP ASN SEQRES 6 A 842 GLU ARG LEU ILE ILE VAL GLY THR LEU GLU SER ARG TYR SEQRES 7 A 842 ILE LYS GLU LEU THR GLU ASN ARG LYS ILE LYS GLY ASP SEQRES 8 A 842 GLU LEU LYS GLY LYS ASN GLU LYS TYR LEU MET THR VAL SEQRES 9 A 842 VAL ASP ASN PRO LEU PRO GLY VAL LYS GLU ALA LEU ILE SEQRES 10 A 842 ILE ALA GLY SER ASP LYS ARG GLY ALA ILE TYR GLY ILE SEQRES 11 A 842 TYR GLU LEU SER GLU GLN ILE GLY VAL SER PRO TRP TYR SEQRES 12 A 842 ASP TRP ALA ASP VAL PRO VAL LYS PRO GLN GLN ASN LEU SEQRES 13 A 842 SER ILE GLU ARG GLY SER TYR THR ALA ASP GLU PRO ALA SEQRES 14 A 842 VAL THR TYR ARG GLY ILE PHE LEU ASN ASP GLU ALA PRO SEQRES 15 A 842 ALA LEU THR SER TRP VAL GLU ASN THR TYR GLY THR LYS SEQRES 16 A 842 TYR GLY ASP HIS ARG PHE TYR SER ARG VAL PHE GLU LEU SEQRES 17 A 842 ILE LEU ARG LEU ARG GLY ASN PHE LEU TRP PRO ALA MET SEQRES 18 A 842 TRP ASP TRP SER PHE TYR GLY ASP ASP PRO LEU ASN SER SEQRES 19 A 842 LYS THR ALA ASP THR MET GLY ILE ILE MET GLY THR SER SEQRES 20 A 842 HIS HIS GLU PRO MET ALA ARG ASN HIS GLN GLU TRP ALA SEQRES 21 A 842 ARG ASN ARG ASP LYS TYR GLY VAL TRP ASP TYR THR SER SEQRES 22 A 842 ASN GLN GLU VAL ILE ASP GLN PHE PHE ARG GLU GLY ILE SEQRES 23 A 842 GLU ARG VAL LYS ASP THR ASP ASP LEU ILE THR ILE GLY SEQRES 24 A 842 MET ARG GLY ASP GLY ASP THR PRO MET PRO MET GLY VAL SEQRES 25 A 842 LYS GLU GLY GLU ASP HIS LEU PRO SER ASP GLU ASP ASN SEQRES 26 A 842 MET ARG LEU LEU GLU ARG ILE ILE LYS ASN GLN ARG GLU SEQRES 27 A 842 ILE ILE GLY ASP VAL THR GLY GLU SER PRO GLU LYS THR SEQRES 28 A 842 PRO GLN VAL TRP ALA ILE TYR LYS GLU VAL GLN ARG TYR SEQRES 29 A 842 PHE ASP LEU GLY LEU ARG PRO PRO GLU ASP VAL ILE ILE SEQRES 30 A 842 LEU LEU SER ASP ASP ASN TRP GLY ASN VAL ARG ARG LEU SEQRES 31 A 842 PRO THR GLU GLU GLU ARG ASP HIS PRO GLY GLY TRP GLY SEQRES 32 A 842 MET TYR TYR HIS PHE ASP TYR VAL GLY ALA PRO ARG SER SEQRES 33 A 842 SER LYS TRP LEU ASN ILE SER PRO ILE GLN ASN ILE TRP SEQRES 34 A 842 GLU GLN MET GLN LEU THR TYR ASP TYR GLY VAL ASP GLU SEQRES 35 A 842 LEU TRP VAL ALA ASN VAL GLY ASP LEU LYS PRO MET GLU SEQRES 36 A 842 TYR PRO ILE THR LEU PHE LEU ASP MET ALA TRP ASP PRO SEQRES 37 A 842 THR ARG PHE ASN ALA GLU ASN LEU LEU ASP HIS THR ARG SEQRES 38 A 842 SER PHE ALA ALA GLN GLN PHE GLY GLU ASP GLN ALA ASP SEQRES 39 A 842 GLU ALA ALA ARG ILE ILE ASN LEU TYR SER LYS TYR ASN SEQRES 40 A 842 GLY ARG VAL THR PRO GLU MET LEU ASP ARG ASN THR TYR SEQRES 41 A 842 ASN LEU GLU SER GLY GLU TRP LYS LYS VAL SER ASP GLU SEQRES 42 A 842 TYR ILE LYS LEU GLU ALA GLU ALA LEU ARG GLN TYR LEU SEQRES 43 A 842 THR LEU GLU PRO GLU GLN ARG ASP ALA TYR LYS GLN LEU SEQRES 44 A 842 ILE LEU TYR PRO VAL GLN ALA MET ALA ASN LEU TYR GLU SEQRES 45 A 842 MET TYR TYR SER GLN ALA MET ASN HIS LYS LEU TYR ARG SEQRES 46 A 842 GLU ASN ASN PRO MET ALA ASN TYR TRP ALA ASP ARG VAL SEQRES 47 A 842 GLU GLU THR PHE ASN ARG ASP ALA GLU LEU SER HIS ASP SEQRES 48 A 842 TYR ASN LYS VAL MET ALA ASN GLY LYS TRP ASP GLY MET SEQRES 49 A 842 MET THR GLN LYS LYS ILE GLY TYR ARG SER TRP ASN ASP SEQRES 50 A 842 ASN PHE PRO ALA ASP THR LEU PRO GLN ILE PHE ARG ILE SEQRES 51 A 842 GLU ASN PRO GLU GLU ALA THR GLY GLY TYR VAL PHE THR SEQRES 52 A 842 ALA ARG ASP GLY VAL VAL VAL ILE GLU ALA GLU HIS TYR SEQRES 53 A 842 PHE GLU ALA LYS ASP ALA GLU GLU ALA LYS TRP THR VAL SEQRES 54 A 842 ILE PRO TYR MET GLY ARG THR LEU SER SER ILE ALA LEU SEQRES 55 A 842 MET PRO TYR THR LYS GLU VAL GLU GLY ALA SER LEU SER SEQRES 56 A 842 TYR ARG MET GLN ILE PRO ASP GLU VAL SER GLU VAL LYS SEQRES 57 A 842 VAL HIS VAL VAL VAL LYS SER THR LEU PRO PHE HIS ASP SEQRES 58 A 842 PRO LYS GLY HIS GLU TYR ARG VAL GLY PHE GLU GLY GLY SEQRES 59 A 842 SER LYS GLU ILE VAL ASN PHE ASN TRP ASN LEU ASN GLU SEQRES 60 A 842 GLU PRO GLU ASN ILE TYR SER VAL PHE TYR PRO THR VAL SEQRES 61 A 842 ALA SER ARG VAL VAL LYS LYS ASP VAL THR LEU ASP LEU SEQRES 62 A 842 HIS ASP THR ASP ASP GLY PHE TYR THR LEU THR LEU GLU SEQRES 63 A 842 PRO LEU ASP PRO GLY ILE VAL PHE GLN LYS ILE VAL VAL SEQRES 64 A 842 ASP PHE GLY GLY TYR GLU GLU SER ARG LEU PHE MET GLU SEQRES 65 A 842 GLU SER PRO ASN LYS ARG ILE GLU ILE GLU HET XYP B 1 19 HET XYP B 2 17 HET XYP B 3 17 HET XYP B 4 17 HET XYP B 5 18 HET CL A 901 1 HET CL A 902 1 HET CL A 903 1 HET CL A 904 1 HET CL A 905 1 HET CL A 906 1 HET CL A 907 1 HET CL A 908 1 HET CL A 909 1 HET CL A 910 1 HET CL A 911 1 HET CL A 912 1 HET CL A 913 1 HET CA A 914 1 HET CA A 915 1 HET CA A 916 1 HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE FORMUL 2 XYP 5(C5 H10 O5) FORMUL 3 CL 13(CL 1-) FORMUL 16 CA 3(CA 2+) FORMUL 19 HOH *298(H2 O) HELIX 1 AA1 ASP A 33 GLY A 52 1 20 HELIX 2 AA2 SER A 74 ASN A 83 1 10 HELIX 3 AA3 LYS A 87 LEU A 91 5 5 HELIX 4 AA4 ASP A 120 GLY A 136 1 17 HELIX 5 AA5 PRO A 180 GLY A 191 1 12 HELIX 6 AA6 ASP A 196 LEU A 210 1 15 HELIX 7 AA7 SER A 223 ASP A 228 1 6 HELIX 8 AA8 ASP A 228 GLY A 239 1 12 HELIX 9 AA9 ASN A 253 ARG A 259 1 7 HELIX 10 AB1 ASN A 272 LYS A 288 1 17 HELIX 11 AB2 ASP A 320 GLY A 343 1 24 HELIX 12 AB3 SER A 345 THR A 349 5 5 HELIX 13 AB4 TYR A 356 GLU A 358 5 3 HELIX 14 AB5 VAL A 359 LEU A 365 1 7 HELIX 15 AB6 GLU A 392 HIS A 396 5 5 HELIX 16 AB7 PRO A 422 TYR A 436 1 15 HELIX 17 AB8 MET A 452 ASP A 465 1 14 HELIX 18 AB9 PRO A 466 PHE A 469 5 4 HELIX 19 AC1 ASN A 473 GLY A 487 1 15 HELIX 20 AC2 GLN A 490 ARG A 507 1 18 HELIX 21 AC3 GLY A 523 LEU A 546 1 24 HELIX 22 AC4 GLU A 547 GLU A 549 5 3 HELIX 23 AC5 GLN A 550 ILE A 558 1 9 HELIX 24 AC6 ILE A 558 ASN A 585 1 28 HELIX 25 AC7 MET A 588 VAL A 613 1 26 HELIX 26 AC8 MET A 614 LYS A 618 5 5 HELIX 27 AC9 ASN A 650 ALA A 654 5 5 HELIX 28 AD1 GLU A 766 TYR A 771 1 6 HELIX 29 AD2 VAL A 773 ARG A 781 1 9 SHEET 1 AA1 4 THR A 6 TYR A 7 0 SHEET 2 AA1 4 LEU A 154 GLU A 157 -1 O SER A 155 N TYR A 7 SHEET 3 AA1 4 ARG A 14 GLU A 19 -1 N LEU A 17 O LEU A 154 SHEET 4 AA1 4 THR A 22 PRO A 23 -1 O THR A 22 N GLU A 19 SHEET 1 AA2 6 LEU A 57 ILE A 58 0 SHEET 2 AA2 6 ILE A 26 LEU A 27 1 N ILE A 26 O ILE A 58 SHEET 3 AA2 6 ARG A 65 THR A 71 1 O ILE A 67 N LEU A 27 SHEET 4 AA2 6 GLU A 112 GLY A 118 1 O ILE A 116 N ILE A 68 SHEET 5 AA2 6 TYR A 98 ASP A 104 -1 N LEU A 99 O ALA A 117 SHEET 6 AA2 6 SER A 160 TYR A 161 -1 O TYR A 161 N MET A 100 SHEET 1 AA3 8 ILE A 241 MET A 242 0 SHEET 2 AA3 8 PHE A 214 TRP A 216 1 N LEU A 215 O ILE A 241 SHEET 3 AA3 8 TYR A 170 PHE A 174 1 N ILE A 173 O TRP A 216 SHEET 4 AA3 8 LEU A 441 ASN A 445 1 O ALA A 444 N PHE A 174 SHEET 5 AA3 8 TRP A 400 HIS A 405 1 N TYR A 404 O ASN A 445 SHEET 6 AA3 8 ILE A 374 SER A 378 1 N ILE A 375 O GLY A 401 SHEET 7 AA3 8 GLN A 351 ALA A 354 1 N TRP A 353 O ILE A 374 SHEET 8 AA3 8 ILE A 294 THR A 295 1 N ILE A 294 O VAL A 352 SHEET 1 AA4 5 GLU A 676 LYS A 678 0 SHEET 2 AA4 5 SER A 711 GLN A 717 -1 O SER A 713 N GLU A 676 SHEET 3 AA4 5 PHE A 798 PRO A 805 -1 O TYR A 799 N MET A 716 SHEET 4 AA4 5 GLU A 744 PHE A 749 -1 N ARG A 746 O GLU A 804 SHEET 5 AA4 5 LYS A 754 ASN A 758 -1 O VAL A 757 N TYR A 745 SHEET 1 AA5 4 GLU A 676 LYS A 678 0 SHEET 2 AA5 4 SER A 711 GLN A 717 -1 O SER A 713 N GLU A 676 SHEET 3 AA5 4 TYR A 658 THR A 661 1 N PHE A 660 O ARG A 715 SHEET 4 AA5 4 ASN A 834 ARG A 836 -1 O LYS A 835 N VAL A 659 SHEET 1 AA6 4 VAL A 666 GLU A 670 0 SHEET 2 AA6 4 PHE A 812 ASP A 818 -1 O ILE A 815 N ILE A 669 SHEET 3 AA6 4 GLU A 724 LYS A 732 -1 N LYS A 726 O ASP A 818 SHEET 4 AA6 4 VAL A 782 ASP A 790 -1 O LEU A 789 N VAL A 725 SHEET 1 AA7 2 LYS A 684 PRO A 689 0 SHEET 2 AA7 2 SER A 696 MET A 701 -1 O ALA A 699 N THR A 686 LINK O4 XYP B 1 C1 XYP B 2 1555 1555 1.44 LINK O4 XYP B 2 C1 XYP B 3 1555 1555 1.46 LINK O4 XYP B 3 C1 XYP B 4 1555 1555 1.45 LINK O4 XYP B 4 C1 XYP B 5 1555 1555 1.46 LINK O LYS A 416 CA CA A 914 1555 1555 2.27 LINK OD2 ASP A 448 CA CA A 914 1555 1555 2.23 LINK OD2 ASP A 640 CA CA A 916 1555 1555 2.55 LINK CA CA A 914 O HOH A1031 1555 1555 2.27 LINK CA CA A 914 O HOH A1094 1555 1555 2.54 LINK CA CA A 914 O HOH A1124 1555 1555 2.28 LINK CA CA A 914 O HOH A1184 1555 1555 2.46 LINK CA CA A 915 O HOH A1146 1555 1555 3.20 LINK CA CA A 916 O HOH A1026 1555 1555 2.60 LINK CA CA A 916 O HOH A1196 1555 1555 3.11 LINK CA CA A 916 O HOH A1226 1555 1555 2.69 LINK CA CA A 916 O HOH A1287 1555 1555 2.74 CISPEP 1 ALA A 179 PRO A 180 0 2.65 CISPEP 2 ALA A 411 PRO A 412 0 -8.62 CISPEP 3 LYS A 450 PRO A 451 0 0.37 CISPEP 4 MET A 701 PRO A 702 0 1.19 CRYST1 148.630 148.630 272.790 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006728 0.003884 0.000000 0.00000 SCALE2 0.000000 0.007769 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003666 0.00000