HEADER OXIDOREDUCTASE 08-OCT-21 7PXL TITLE X-RAY STRUCTURE OF LPMO AT 3.6X10^5 GY COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUXILIARY ACTIVITY 9; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LSAA9A, LYTIC POLYSACCHARIDE MONOOXYGENASE; COMPND 5 EC: 1.14.99.56; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LENTINUS SIMILIS; SOURCE 3 ORGANISM_COMMON: PANUS SIMILIS; SOURCE 4 ORGANISM_TAXID: 1755448; SOURCE 5 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS LYTIC POLYSACCHARIDE MONOOXYGENASE, METALLOENZYME, AA9, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TANDRUP,L.LO LEGGIO REVDAT 3 31-JAN-24 7PXL 1 REMARK REVDAT 2 21-SEP-22 7PXL 1 JRNL REVDAT 1 24-AUG-22 7PXL 0 JRNL AUTH T.TANDRUP,S.J.MUDERSPACH,S.BANERJEE,G.SANTONI,J.O.IPSEN, JRNL AUTH 2 C.HERNANDEZ-ROLLAN,M.H.H.NORHOLM,K.S.JOHANSEN,F.MEILLEUR, JRNL AUTH 3 L.LO LEGGIO JRNL TITL CHANGES IN ACTIVE-SITE GEOMETRY ON X-RAY PHOTOREDUCTION OF A JRNL TITL 2 LYTIC POLYSACCHARIDE MONOOXYGENASE ACTIVE-SITE COPPER AND JRNL TITL 3 SACCHARIDE BINDING. JRNL REF IUCRJ V. 9 666 2022 JRNL REFN ESSN 2052-2525 JRNL PMID 36071795 JRNL DOI 10.1107/S2052252522007175 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 69733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3642 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1292118506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82005 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.67 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ACH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.3 M NACL, 0.1 M CITRIC ACID PH 3.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.51500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.51500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.51500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.51500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 62.51500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 62.51500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 62.51500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 62.51500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 62.51500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 62.51500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 62.51500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 62.51500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 62.51500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 62.51500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 62.51500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 62.51500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 93.77250 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 31.25750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 31.25750 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 93.77250 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 93.77250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 93.77250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 31.25750 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 31.25750 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 93.77250 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 31.25750 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 93.77250 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 31.25750 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 93.77250 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 31.25750 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 31.25750 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 31.25750 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 93.77250 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 31.25750 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 93.77250 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 93.77250 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 93.77250 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 31.25750 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 31.25750 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 93.77250 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 93.77250 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 31.25750 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 31.25750 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 31.25750 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 31.25750 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 93.77250 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 31.25750 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 93.77250 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 31.25750 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 93.77250 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 93.77250 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 93.77250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 691 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 694 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 695 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 155 O HOH A 401 1.59 REMARK 500 NE2 GLN A 155 O HOH A 402 1.60 REMARK 500 O SER A 175 CL CL A 305 1.80 REMARK 500 O HOH A 645 O HOH A 674 1.92 REMARK 500 O HOH A 438 O HOH A 560 1.99 REMARK 500 ND2 ASN A 92 O HOH A 403 2.02 REMARK 500 O HOH A 434 O HOH A 664 2.09 REMARK 500 O HOH A 423 O HOH A 467 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 670 O HOH A 672 9555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 191 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 41 33.79 -144.04 REMARK 500 ASN A 42 -170.81 74.38 REMARK 500 HIS A 66 -68.13 -94.82 REMARK 500 ASP A 71 -143.20 -94.61 REMARK 500 ILE A 73 -60.57 77.75 REMARK 500 HIS A 78 43.88 -80.28 REMARK 500 ASN A 92 28.51 49.15 REMARK 500 ALA A 105 -80.19 -115.43 REMARK 500 ARG A 159 -164.48 -128.50 REMARK 500 ASN A 173 -66.42 -96.77 REMARK 500 SER A 175 -53.04 -147.06 REMARK 500 ASP A 176 -16.68 99.42 REMARK 500 LEU A 222 -36.45 -141.44 REMARK 500 ALA A 227 138.32 -173.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 223 GLY A 224 -115.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 221 -10.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIC A 1 N REMARK 620 2 HIC A 1 ND1 92.1 REMARK 620 3 HIS A 78 NE2 96.7 170.2 REMARK 620 4 HOH A 526 O 170.3 89.4 82.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7PXI RELATED DB: PDB REMARK 900 STRUCTURE AT DIFFERENT X-RAY DOSE REMARK 900 RELATED ID: 7PXJ RELATED DB: PDB REMARK 900 STRUCTURE AT DIFFERENT X-RAY DOSE REMARK 900 RELATED ID: 7PXK RELATED DB: PDB REMARK 900 STRUCTURE AT DIFFERENT X-RAY DOSE DBREF1 7PXL A 1 235 UNP A0A0S2GKZ1_9APHY DBREF2 7PXL A A0A0S2GKZ1 20 254 SEQRES 1 A 235 HIC THR LEU VAL TRP GLY VAL TRP VAL ASN GLY VAL ASP SEQRES 2 A 235 GLN GLY ASP GLY ARG ASN ILE TYR ILE ARG SER PRO PRO SEQRES 3 A 235 ASN ASN ASN PRO VAL LYS ASN LEU THR SER PRO ASP MET SEQRES 4 A 235 THR CYS ASN VAL ASP ASN ARG VAL VAL PRO LYS SER VAL SEQRES 5 A 235 PRO VAL ASN ALA GLY ASP THR LEU THR PHE GLU TRP TYR SEQRES 6 A 235 HIS ASN THR ARG ASP ASP ASP ILE ILE ALA SER SER HIS SEQRES 7 A 235 HIS GLY PRO ILE ALA VAL TYR ILE ALA PRO ALA ALA SER SEQRES 8 A 235 ASN GLY GLN GLY ASN VAL TRP VAL LYS LEU PHE GLU ASP SEQRES 9 A 235 ALA TYR ASN VAL THR ASN SER THR TRP ALA VAL ASP ARG SEQRES 10 A 235 LEU ILE THR ALA HIS GLY GLN HIS SER VAL VAL VAL PRO SEQRES 11 A 235 HIS VAL ALA PRO GLY ASP TYR LEU PHE ARG ALA GLU ILE SEQRES 12 A 235 ILE ALA LEU HIS GLU ALA ASP SER LEU TYR SER GLN ASN SEQRES 13 A 235 PRO ILE ARG GLY ALA GLN PHE TYR ILE SER CYS ALA GLN SEQRES 14 A 235 ILE THR ILE ASN SER SER ASP ASP SER THR PRO LEU PRO SEQRES 15 A 235 ALA GLY VAL PRO PHE PRO GLY ALA TYR THR ASP SER THR SEQRES 16 A 235 PRO GLY ILE GLN PHE ASN ILE TYR THR THR PRO ALA THR SEQRES 17 A 235 SER TYR VAL ALA PRO PRO PRO SER VAL TRP SER GLY ALA SEQRES 18 A 235 LEU GLY GLY SER ILE ALA GLN VAL GLY ASP ALA SER LEU SEQRES 19 A 235 GLU MODRES 7PXL HIC A 1 HIS MODIFIED RESIDUE HET HIC A 1 11 HET CU A 301 1 HET NAG A 302 14 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HETNAM HIC 4-METHYL-HISTIDINE HETNAM CU COPPER (II) ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 HIC C7 H11 N3 O2 FORMUL 2 CU CU 2+ FORMUL 3 NAG C8 H15 N O6 FORMUL 4 CL 3(CL 1-) FORMUL 7 HOH *295(H2 O) HELIX 1 AA1 SER A 36 THR A 40 5 5 HELIX 2 AA2 ALA A 90 ASN A 92 5 3 HELIX 3 AA3 ALA A 114 ALA A 121 1 8 HELIX 4 AA4 PRO A 206 TYR A 210 5 5 HELIX 5 AA5 ASP A 231 GLU A 235 5 5 SHEET 1 AA1 5 VAL A 12 ASP A 16 0 SHEET 2 AA1 5 LEU A 3 VAL A 9 -1 N VAL A 7 O GLN A 14 SHEET 3 AA1 5 THR A 59 TYR A 65 -1 O GLU A 63 N TRP A 5 SHEET 4 AA1 5 GLN A 124 VAL A 128 -1 O VAL A 127 N LEU A 60 SHEET 5 AA1 5 SER A 225 ILE A 226 -1 O SER A 225 N SER A 126 SHEET 1 AA2 5 VAL A 52 VAL A 54 0 SHEET 2 AA2 5 GLN A 162 ILE A 172 1 O THR A 171 N VAL A 54 SHEET 3 AA2 5 GLY A 135 ALA A 145 -1 N TYR A 137 O ILE A 170 SHEET 4 AA2 5 ILE A 82 PRO A 88 -1 N ALA A 87 O LEU A 138 SHEET 5 AA2 5 VAL A 99 ASP A 104 -1 O LEU A 101 N VAL A 84 SHEET 1 AA3 2 TYR A 106 ASN A 107 0 SHEET 2 AA3 2 THR A 112 TRP A 113 -1 O THR A 112 N ASN A 107 SSBOND 1 CYS A 41 CYS A 167 1555 1555 2.09 LINK C HIC A 1 N THR A 2 1555 1555 1.34 LINK ND2 ASN A 33 C1 NAG A 302 1555 1555 1.46 LINK N HIC A 1 CU CU A 301 1555 1555 2.24 LINK ND1 HIC A 1 CU CU A 301 1555 1555 1.86 LINK NE2 HIS A 78 CU CU A 301 1555 1555 1.96 LINK CU CU A 301 O AHOH A 526 1555 1555 2.28 CISPEP 1 PHE A 187 PRO A 188 0 -4.29 CISPEP 2 PRO A 214 PRO A 215 0 7.00 CISPEP 3 GLY A 223 GLY A 224 0 29.28 CRYST1 125.030 125.030 125.030 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007998 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007998 0.00000 HETATM 1 N HIC A 1 -5.671 -4.738 18.105 1.00 12.86 N HETATM 2 CA HIC A 1 -5.452 -4.338 16.704 1.00 12.38 C HETATM 3 C HIC A 1 -4.252 -5.094 16.148 1.00 13.64 C HETATM 4 O HIC A 1 -3.107 -4.834 16.517 1.00 14.73 O HETATM 5 CB HIC A 1 -5.258 -2.821 16.596 1.00 12.98 C HETATM 6 CG HIC A 1 -6.518 -2.053 16.814 1.00 14.12 C HETATM 7 ND1 HIC A 1 -7.229 -2.225 17.989 1.00 14.42 N HETATM 8 CD2 HIC A 1 -7.109 -1.117 16.047 1.00 14.74 C HETATM 9 CE1 HIC A 1 -8.237 -1.387 17.880 1.00 14.87 C HETATM 10 NE2 HIC A 1 -8.279 -0.727 16.717 1.00 15.87 N HETATM 11 CZ HIC A 1 -9.247 0.304 16.337 1.00 19.80 C