HEADER LIGASE 08-OCT-21 7PXO TITLE STRUCTURE OF THE DIELS ALDERASE ENZYME ABYU, FROM MICROMONOSPORA TITLE 2 MARIS, CO-CRYSTALLISED WITH A NON TRANSFORMABLE SUBSTRATE ANALOGUE CAVEAT 7PXO 8IF D 201 HAS WRONG CHIRALITY AT ATOM C4 8IF D 201 HAS WRONG CAVEAT 2 7PXO CHIRALITY AT ATOM C6 8IF A 201 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 7PXO C4 8IF A 201 HAS WRONG CHIRALITY AT ATOM C6 8IF B 201 HAS CAVEAT 4 7PXO WRONG CHIRALITY AT ATOM C4 8IF B 201 HAS WRONG CHIRALITY AT CAVEAT 5 7PXO ATOM C6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: YD REPEAT-CONTAINING PROTEIN; COMPND 3 CHAIN: D, A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROMONOSPORA MARIS AB-18-032; SOURCE 3 ORGANISM_TAXID: 263358; SOURCE 4 GENE: VAB18032_16470; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: POPINF KEYWDS DIELS ALDERASE, COMPLEX, ABYSSOMICIN, SUBSTRATE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.R.BACK,P.R.RACE REVDAT 3 24-APR-24 7PXO 1 CAVEAT SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV SEQRES HELIX SHEET REVDAT 3 3 1 LINK ATOM REVDAT 2 31-JAN-24 7PXO 1 REMARK REVDAT 1 16-NOV-22 7PXO 0 JRNL AUTH L.MASCHIO,S.Z.MBATHA,S.T.JOHNS,C.R.BACK,K.ZORN,J.E.M.STACH, JRNL AUTH 2 M.A.HAYES,M.W.VAN DER KAMP,C.L.WILLIS,C.R.PUDNEY, JRNL AUTH 3 S.G.BURSTON,P.R.RACE JRNL TITL DELINEATION OF THE COMPLETE REACTION CYCLE OF A NATURAL JRNL TITL 2 DIELS-ALDERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 50225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2553 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3990 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4167 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.30000 REMARK 3 B22 (A**2) : -2.76000 REMARK 3 B33 (A**2) : 3.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.94000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.236 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4380 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4131 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5950 ; 1.682 ; 1.822 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9471 ; 0.580 ; 1.750 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 535 ; 7.862 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;19.938 ; 7.213 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 673 ;14.092 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 659 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5250 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1030 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2146 ; 3.888 ; 4.860 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2146 ; 3.886 ; 4.860 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2676 ; 5.180 ; 8.708 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2677 ; 5.179 ; 8.709 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2234 ; 5.104 ; 5.469 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2232 ; 5.040 ; 5.461 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3274 ; 7.523 ; 9.815 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4629 ; 9.460 ;48.410 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4628 ; 9.462 ;48.430 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 7PXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1292118409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52793 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 61.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5DYV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M MGCL2, 0.1 M HEPES, 22% REMARK 280 POLYACRYLIC ACID SODIUM SALT (MW 5100), PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.78000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 39.32804 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 30.78000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.82584 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D -18 REMARK 465 ALA D -17 REMARK 465 HIS D -16 REMARK 465 HIS D -15 REMARK 465 HIS D -14 REMARK 465 HIS D -13 REMARK 465 HIS D -12 REMARK 465 HIS D -11 REMARK 465 SER D -10 REMARK 465 SER D -9 REMARK 465 GLY D -8 REMARK 465 LEU D -7 REMARK 465 GLU D -6 REMARK 465 VAL D -5 REMARK 465 LEU D -4 REMARK 465 PHE D -3 REMARK 465 GLN D -2 REMARK 465 GLY D -1 REMARK 465 PRO D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLU D 3 REMARK 465 ARG D 4 REMARK 465 LEU D 5 REMARK 465 GLU D 6 REMARK 465 THR D 7 REMARK 465 ARG D 8 REMARK 465 PRO D 9 REMARK 465 MET A -18 REMARK 465 ALA A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 GLU A -6 REMARK 465 VAL A -5 REMARK 465 LEU A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 4 REMARK 465 LEU A 5 REMARK 465 MET B -18 REMARK 465 ALA B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 GLU B -6 REMARK 465 VAL B -5 REMARK 465 LEU B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 ARG B 4 REMARK 465 LEU B 5 REMARK 465 MET C -18 REMARK 465 ALA C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 SER C -10 REMARK 465 SER C -9 REMARK 465 GLY C -8 REMARK 465 LEU C -7 REMARK 465 GLU C -6 REMARK 465 VAL C -5 REMARK 465 LEU C -4 REMARK 465 PHE C -3 REMARK 465 GLN C -2 REMARK 465 GLY C -1 REMARK 465 PRO C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 GLU C 3 REMARK 465 ARG C 4 REMARK 465 LEU C 5 REMARK 465 GLU C 6 REMARK 465 THR C 7 REMARK 465 ARG C 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 32 65.64 -152.43 REMARK 500 LEU D 116 122.12 -36.06 REMARK 500 LYS D 131 -41.66 -153.97 REMARK 500 LYS A 131 -56.56 -136.81 REMARK 500 THR B 68 -71.54 -43.13 REMARK 500 LYS B 131 -52.86 -137.30 REMARK 500 VAL C 129 129.86 -36.11 REMARK 500 LYS C 131 -49.09 -138.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG D 125 0.09 SIDE CHAIN REMARK 500 ARG A 122 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7PXO D 1 141 UNP F4F7G1 F4F7G1_MICM1 1 141 DBREF 7PXO A 1 141 UNP F4F7G1 F4F7G1_MICM1 1 141 DBREF 7PXO B 1 141 UNP F4F7G1 F4F7G1_MICM1 1 141 DBREF 7PXO C 1 141 UNP F4F7G1 F4F7G1_MICM1 1 141 SEQADV 7PXO MET D -18 UNP F4F7G1 INITIATING METHIONINE SEQADV 7PXO ALA D -17 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS D -16 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS D -15 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS D -14 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS D -13 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS D -12 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS D -11 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO SER D -10 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO SER D -9 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLY D -8 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO LEU D -7 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLU D -6 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO VAL D -5 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO LEU D -4 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO PHE D -3 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLN D -2 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLY D -1 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO PRO D 0 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO MET A -18 UNP F4F7G1 INITIATING METHIONINE SEQADV 7PXO ALA A -17 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS A -16 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS A -15 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS A -14 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS A -13 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS A -12 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS A -11 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO SER A -10 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO SER A -9 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLY A -8 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO LEU A -7 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLU A -6 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO VAL A -5 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO LEU A -4 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO PHE A -3 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLN A -2 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLY A -1 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO PRO A 0 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO MET B -18 UNP F4F7G1 INITIATING METHIONINE SEQADV 7PXO ALA B -17 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS B -16 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS B -15 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS B -14 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS B -13 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS B -12 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS B -11 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO SER B -10 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO SER B -9 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLY B -8 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO LEU B -7 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLU B -6 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO VAL B -5 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO LEU B -4 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO PHE B -3 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLN B -2 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLY B -1 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO PRO B 0 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO MET C -18 UNP F4F7G1 INITIATING METHIONINE SEQADV 7PXO ALA C -17 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS C -16 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS C -15 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS C -14 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS C -13 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS C -12 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO HIS C -11 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO SER C -10 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO SER C -9 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLY C -8 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO LEU C -7 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLU C -6 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO VAL C -5 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO LEU C -4 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO PHE C -3 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLN C -2 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO GLY C -1 UNP F4F7G1 EXPRESSION TAG SEQADV 7PXO PRO C 0 UNP F4F7G1 EXPRESSION TAG SEQRES 1 D 160 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 D 160 VAL LEU PHE GLN GLY PRO MET THR GLU ARG LEU GLU THR SEQRES 3 D 160 ARG PRO GLN ALA LEU LEU ILE LYS VAL PRO THR GLU ILE SEQRES 4 D 160 VAL VAL LYS VAL VAL ASP ASP VAL ASP VAL ALA ALA PRO SEQRES 5 D 160 ALA VAL GLY GLN VAL GLY LYS PHE ASP ASP GLU LEU TYR SEQRES 6 D 160 ASP GLU ALA GLY ALA GLN ILE GLY THR SER SER GLY ASN SEQRES 7 D 160 PHE ARG ILE GLU TYR VAL ARG PRO THR ASP GLY GLY LEU SEQRES 8 D 160 LEU THR TYR TYR GLN GLU ASP ILE THR LEU SER ASP GLY SEQRES 9 D 160 VAL ILE HIS ALA GLU GLY TRP ALA ASP PHE ASN ASP VAL SEQRES 10 D 160 ARG THR SER LYS TRP VAL PHE TYR PRO ALA THR GLY VAL SEQRES 11 D 160 SER GLY ARG TYR LEU GLY LEU THR GLY PHE ARG GLN TRP SEQRES 12 D 160 ARG MET THR GLY VAL ARG LYS SER ALA GLU ALA ARG ILE SEQRES 13 D 160 LEU LEU GLY GLU SEQRES 1 A 160 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 A 160 VAL LEU PHE GLN GLY PRO MET THR GLU ARG LEU GLU THR SEQRES 3 A 160 ARG PRO GLN ALA LEU LEU ILE LYS VAL PRO THR GLU ILE SEQRES 4 A 160 VAL VAL LYS VAL VAL ASP ASP VAL ASP VAL ALA ALA PRO SEQRES 5 A 160 ALA VAL GLY GLN VAL GLY LYS PHE ASP ASP GLU LEU TYR SEQRES 6 A 160 ASP GLU ALA GLY ALA GLN ILE GLY THR SER SER GLY ASN SEQRES 7 A 160 PHE ARG ILE GLU TYR VAL ARG PRO THR ASP GLY GLY LEU SEQRES 8 A 160 LEU THR TYR TYR GLN GLU ASP ILE THR LEU SER ASP GLY SEQRES 9 A 160 VAL ILE HIS ALA GLU GLY TRP ALA ASP PHE ASN ASP VAL SEQRES 10 A 160 ARG THR SER LYS TRP VAL PHE TYR PRO ALA THR GLY VAL SEQRES 11 A 160 SER GLY ARG TYR LEU GLY LEU THR GLY PHE ARG GLN TRP SEQRES 12 A 160 ARG MET THR GLY VAL ARG LYS SER ALA GLU ALA ARG ILE SEQRES 13 A 160 LEU LEU GLY GLU SEQRES 1 B 160 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 B 160 VAL LEU PHE GLN GLY PRO MET THR GLU ARG LEU GLU THR SEQRES 3 B 160 ARG PRO GLN ALA LEU LEU ILE LYS VAL PRO THR GLU ILE SEQRES 4 B 160 VAL VAL LYS VAL VAL ASP ASP VAL ASP VAL ALA ALA PRO SEQRES 5 B 160 ALA VAL GLY GLN VAL GLY LYS PHE ASP ASP GLU LEU TYR SEQRES 6 B 160 ASP GLU ALA GLY ALA GLN ILE GLY THR SER SER GLY ASN SEQRES 7 B 160 PHE ARG ILE GLU TYR VAL ARG PRO THR ASP GLY GLY LEU SEQRES 8 B 160 LEU THR TYR TYR GLN GLU ASP ILE THR LEU SER ASP GLY SEQRES 9 B 160 VAL ILE HIS ALA GLU GLY TRP ALA ASP PHE ASN ASP VAL SEQRES 10 B 160 ARG THR SER LYS TRP VAL PHE TYR PRO ALA THR GLY VAL SEQRES 11 B 160 SER GLY ARG TYR LEU GLY LEU THR GLY PHE ARG GLN TRP SEQRES 12 B 160 ARG MET THR GLY VAL ARG LYS SER ALA GLU ALA ARG ILE SEQRES 13 B 160 LEU LEU GLY GLU SEQRES 1 C 160 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 C 160 VAL LEU PHE GLN GLY PRO MET THR GLU ARG LEU GLU THR SEQRES 3 C 160 ARG PRO GLN ALA LEU LEU ILE LYS VAL PRO THR GLU ILE SEQRES 4 C 160 VAL VAL LYS VAL VAL ASP ASP VAL ASP VAL ALA ALA PRO SEQRES 5 C 160 ALA VAL GLY GLN VAL GLY LYS PHE ASP ASP GLU LEU TYR SEQRES 6 C 160 ASP GLU ALA GLY ALA GLN ILE GLY THR SER SER GLY ASN SEQRES 7 C 160 PHE ARG ILE GLU TYR VAL ARG PRO THR ASP GLY GLY LEU SEQRES 8 C 160 LEU THR TYR TYR GLN GLU ASP ILE THR LEU SER ASP GLY SEQRES 9 C 160 VAL ILE HIS ALA GLU GLY TRP ALA ASP PHE ASN ASP VAL SEQRES 10 C 160 ARG THR SER LYS TRP VAL PHE TYR PRO ALA THR GLY VAL SEQRES 11 C 160 SER GLY ARG TYR LEU GLY LEU THR GLY PHE ARG GLN TRP SEQRES 12 C 160 ARG MET THR GLY VAL ARG LYS SER ALA GLU ALA ARG ILE SEQRES 13 C 160 LEU LEU GLY GLU HET 8IF D 201 25 HET EPE D 202 15 HET 8IF A 201 25 HET 8IF B 201 25 HET EPE C 201 15 HET EPE C 202 15 HETNAM 8IF (2~{S},4~{S})-1-(4-METHOXY-5-METHYL-2-OXIDANYLIDENE- HETNAM 2 8IF 3~{H}-FURAN-3-YL)-2,4-DIMETHYL-DODECANE-1,5-DIONE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 5 8IF 3(C20 H32 O5) FORMUL 6 EPE 3(C8 H18 N2 O4 S) FORMUL 11 HOH *42(H2 O) HELIX 1 AA1 PHE D 95 ARG D 99 1 5 HELIX 2 AA2 SER D 112 LEU D 116 5 5 HELIX 3 AA3 PHE A 95 THR A 100 1 6 HELIX 4 AA4 SER A 112 LEU A 116 5 5 HELIX 5 AA5 PHE B 95 THR B 100 1 6 HELIX 6 AA6 SER B 112 LEU B 116 5 5 HELIX 7 AA7 PHE C 95 ARG C 99 1 5 HELIX 8 AA8 SER C 112 LEU C 116 5 5 SHEET 1 AA1 9 ALA D 11 ASP D 26 0 SHEET 2 AA1 9 VAL D 38 TYR D 46 -1 O GLU D 44 N ILE D 20 SHEET 3 AA1 9 GLN D 52 VAL D 65 -1 O GLY D 54 N LEU D 45 SHEET 4 AA1 9 LEU D 72 LEU D 82 -1 O ASP D 79 N SER D 57 SHEET 5 AA1 9 GLY D 85 ASP D 94 -1 O ALA D 93 N THR D 74 SHEET 6 AA1 9 VAL D 104 GLY D 110 -1 O THR D 109 N HIS D 88 SHEET 7 AA1 9 THR D 119 GLY D 128 -1 O GLY D 120 N ALA D 108 SHEET 8 AA1 9 SER D 132 GLY D 140 -1 O ARG D 136 N GLN D 123 SHEET 9 AA1 9 ALA D 11 ASP D 26 -1 N LEU D 12 O LEU D 139 SHEET 1 AA2 9 ALA A 11 ASP A 26 0 SHEET 2 AA2 9 VAL A 38 TYR A 46 -1 O TYR A 46 N THR A 18 SHEET 3 AA2 9 GLN A 52 VAL A 65 -1 O GLY A 54 N LEU A 45 SHEET 4 AA2 9 LEU A 72 LEU A 82 -1 O LEU A 73 N GLU A 63 SHEET 5 AA2 9 GLY A 85 ASP A 94 -1 O ILE A 87 N ILE A 80 SHEET 6 AA2 9 VAL A 104 GLY A 110 -1 O THR A 109 N HIS A 88 SHEET 7 AA2 9 THR A 119 GLY A 128 -1 O TRP A 124 N VAL A 104 SHEET 8 AA2 9 SER A 132 GLY A 140 -1 O ARG A 136 N GLN A 123 SHEET 9 AA2 9 ALA A 11 ASP A 26 -1 N VAL A 16 O ALA A 135 SHEET 1 AA3 9 ALA B 11 ASP B 26 0 SHEET 2 AA3 9 VAL B 38 TYR B 46 -1 O GLU B 44 N ILE B 20 SHEET 3 AA3 9 GLN B 52 VAL B 65 -1 O GLY B 54 N LEU B 45 SHEET 4 AA3 9 LEU B 72 LEU B 82 -1 O ASP B 79 N SER B 57 SHEET 5 AA3 9 GLY B 85 ASP B 94 -1 O ALA B 93 N THR B 74 SHEET 6 AA3 9 VAL B 104 GLY B 110 -1 O THR B 109 N HIS B 88 SHEET 7 AA3 9 THR B 119 GLY B 128 -1 O TRP B 124 N VAL B 104 SHEET 8 AA3 9 SER B 132 GLY B 140 -1 O ARG B 136 N GLN B 123 SHEET 9 AA3 9 ALA B 11 ASP B 26 -1 N GLU B 19 O ALA B 133 SHEET 1 AA4 9 ALA C 11 ASP C 26 0 SHEET 2 AA4 9 VAL C 38 TYR C 46 -1 O LYS C 40 N VAL C 25 SHEET 3 AA4 9 GLN C 52 VAL C 65 -1 O SER C 56 N ASP C 43 SHEET 4 AA4 9 LEU C 72 LEU C 82 -1 O LEU C 73 N GLU C 63 SHEET 5 AA4 9 GLY C 85 ASP C 94 -1 O ALA C 93 N THR C 74 SHEET 6 AA4 9 VAL C 104 GLY C 110 -1 O THR C 109 N HIS C 88 SHEET 7 AA4 9 THR C 119 GLY C 128 -1 O GLY C 120 N ALA C 108 SHEET 8 AA4 9 SER C 132 GLY C 140 -1 O ARG C 136 N GLN C 123 SHEET 9 AA4 9 ALA C 11 ASP C 26 -1 N ILE C 14 O ILE C 137 LINK CG BMET B 126 C15 8IF B 201 1555 1555 1.43 LINK SD BMET B 126 C18 8IF B 201 1555 1555 1.79 LINK CE BMET B 126 C15 8IF B 201 1555 1555 1.64 CRYST1 73.570 61.560 87.780 90.00 112.96 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013592 0.000000 0.005758 0.00000 SCALE2 0.000000 0.016244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012372 0.00000