HEADER SIGNALING PROTEIN 11-OCT-21 7PZA TITLE STRUCTURE OF THE CLR-CAMP-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CAMP-BINDING PROTEIN-CATABOLITE GENE ACTIVATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*CP*TP*AP*GP*GP*TP*AP*AP*CP*AP*TP*TP*AP*CP*TP*CP*GP)-3'); COMPND 8 CHAIN: C, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*GP*CP*GP*AP*GP*TP*AP*AP*TP*GP*TP*TP*AP*C)-3'); COMPND 12 CHAIN: D, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI 1021; SOURCE 3 ORGANISM_TAXID: 266834; SOURCE 4 GENE: SMC02175; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 13 ORGANISM_TAXID: 382; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 17 ORGANISM_TAXID: 382 KEYWDS CYCLIC NUCLEOTIDE, SECOND MESSENGER, TRANSCRIPTION FACTOR, CRP KEYWDS 2 FAMILY, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.WEREL,L.-O.ESSEN REVDAT 3 07-FEB-24 7PZA 1 REMARK REVDAT 2 24-MAY-23 7PZA 1 JRNL REVDAT 1 02-NOV-22 7PZA 0 JRNL AUTH L.WEREL,N.FARMANI,E.KROL,J.SERRANIA,L.O.ESSEN,A.BECKER JRNL TITL STRUCTURAL BASIS OF DUAL SPECIFICITY OF SINORHIZOBIUM JRNL TITL 2 MELILOTI CLR, A CAMP AND CGMP RECEPTOR PROTEIN. JRNL REF MBIO V. 14 02822 2023 JRNL REFN ESSN 2150-7511 JRNL PMID 37017526 JRNL DOI 10.1128/MBIO.03028-22 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.9 REMARK 3 NUMBER OF REFLECTIONS : 14730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.272 REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.0300 - 4.6500 1.00 3934 183 0.2410 0.2611 REMARK 3 2 4.6500 - 3.6900 1.00 3727 208 0.2557 0.2930 REMARK 3 3 3.6900 - 3.2300 1.00 3683 206 0.3189 0.3693 REMARK 3 4 3.2300 - 2.9300 0.59 2153 128 0.3574 0.3687 REMARK 3 5 2.9300 - 2.7200 0.13 486 22 0.4329 0.7208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.429 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.343 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 4770 REMARK 3 ANGLE : 2.348 6681 REMARK 3 CHIRALITY : 0.114 768 REMARK 3 PLANARITY : 0.043 668 REMARK 3 DIHEDRAL : 27.812 1031 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 9 through 27 or REMARK 3 resid 30 through 34 or resid 36 through REMARK 3 65 or resid 67 through 121 or (resid 122 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 123 through 164 REMARK 3 or resid 167 through 170 or resid 172 REMARK 3 through 199 or resid 201 through 211 or REMARK 3 resid 213 through 223 or resid 225 REMARK 3 through 231)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 9 through 26 or REMARK 3 (resid 27 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 30 REMARK 3 through 34 or resid 36 through 65 or REMARK 3 resid 67 through 164 or resid 167 through REMARK 3 170 or resid 172 through 199 or resid 201 REMARK 3 through 211 or resid 213 through 223 or REMARK 3 resid 225 through 231)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "a" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "b" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1292118678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14734 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.722 REMARK 200 RESOLUTION RANGE LOW (A) : 66.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 74.9 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.14530 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 6.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.22300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CYD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09 M SODIUM FLUORIDE, 0.09 M SODIUM REMARK 280 BROMIDE, 0.09 M SODIUM IODIDE, 0.1 M TRIS BASE/BICINE PH 8.5, REMARK 280 12.5% (V/V) MPD, 12.5% (W/V) PEG 1000, 12.5% (W/V) PEG3350, 0.25 REMARK 280 MM CLR, 25 MM CAMP, 25 MM MAGNESIUM CHLORIDE, 0.3125 MM DSDNA, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.19500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.19500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 ILE A 5 REMARK 465 ARG A 6 REMARK 465 SER A 7 REMARK 465 GLU A 233 REMARK 465 ASP A 234 REMARK 465 LEU A 235 REMARK 465 GLU A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 VAL B 4 REMARK 465 ILE B 5 REMARK 465 GLU B 232 REMARK 465 GLU B 233 REMARK 465 ASP B 234 REMARK 465 LEU B 235 REMARK 465 GLU B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 DC C 18 REMARK 465 DC E 14 REMARK 465 DT E 15 REMARK 465 DC E 16 REMARK 465 DG E 17 REMARK 465 DC E 18 REMARK 465 DG F 1 REMARK 465 DC F 2 REMARK 465 DG F 3 REMARK 465 DA F 4 REMARK 465 DG F 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 GLN A 174 CG CD OE1 NE2 REMARK 470 ARG B 6 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 122 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 GLN B 174 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 27 CB GLU B 27 CG 0.212 REMARK 500 GLU B 27 CD GLU B 27 OE1 0.105 REMARK 500 ARG B 224 CB ARG B 224 CG 0.176 REMARK 500 DA C 3 O3' DA C 3 C3' -0.068 REMARK 500 DG C 5 O3' DG C 5 C3' -0.091 REMARK 500 DC C 9 O3' DC C 9 C3' -0.056 REMARK 500 DA C 13 O3' DA C 13 C3' -0.040 REMARK 500 DG C 17 C5' DG C 17 C4' 0.042 REMARK 500 DC D 2 O3' DC D 2 C3' -0.047 REMARK 500 DT D 6 O3' DT D 6 C3' -0.053 REMARK 500 DT D 12 C5 DT D 12 C6 0.051 REMARK 500 DT E 2 O3' DT E 2 C3' -0.087 REMARK 500 DA E 3 O3' DA E 3 C3' -0.064 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 16 CG1 - CB - CG2 ANGL. DEV. = -15.8 DEGREES REMARK 500 LEU A 25 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 LEU A 25 CB - CG - CD2 ANGL. DEV. = -18.3 DEGREES REMARK 500 CYS A 26 CA - CB - SG ANGL. DEV. = 8.9 DEGREES REMARK 500 LEU A 28 CB - CA - C ANGL. DEV. = 11.4 DEGREES REMARK 500 LEU A 28 CB - CG - CD1 ANGL. DEV. = 21.3 DEGREES REMARK 500 SER A 29 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 SER A 29 N - CA - CB ANGL. DEV. = -10.9 DEGREES REMARK 500 PHE A 115 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 LEU A 182 CB - CG - CD2 ANGL. DEV. = -12.6 DEGREES REMARK 500 ILE B 16 CG1 - CB - CG2 ANGL. DEV. = -15.8 DEGREES REMARK 500 LEU B 25 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 LEU B 25 CB - CG - CD2 ANGL. DEV. = -18.3 DEGREES REMARK 500 CYS B 26 CA - CB - SG ANGL. DEV. = 8.9 DEGREES REMARK 500 LEU B 28 CB - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 LEU B 28 N - CA - CB ANGL. DEV. = 16.0 DEGREES REMARK 500 LEU B 28 CA - CB - CG ANGL. DEV. = 25.3 DEGREES REMARK 500 LEU B 28 CB - CG - CD1 ANGL. DEV. = -15.6 DEGREES REMARK 500 PHE B 115 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 LEU B 182 CB - CG - CD2 ANGL. DEV. = -12.6 DEGREES REMARK 500 DG C 4 O5' - P - OP1 ANGL. DEV. = -9.5 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG C 5 O5' - P - OP1 ANGL. DEV. = -5.5 DEGREES REMARK 500 DC C 9 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA C 10 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT C 15 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG D 5 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT E 2 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA E 3 OP1 - P - OP2 ANGL. DEV. = 11.9 DEGREES REMARK 500 DA E 3 O5' - P - OP1 ANGL. DEV. = -6.6 DEGREES REMARK 500 DG E 4 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG E 5 O3' - P - OP1 ANGL. DEV. = 6.6 DEGREES REMARK 500 DA E 7 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA E 8 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA F 7 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA F 8 O5' - P - OP1 ANGL. DEV. = -6.2 DEGREES REMARK 500 DA F 8 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC F 14 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 10.08 -68.71 REMARK 500 ILE A 16 -61.87 78.97 REMARK 500 GLU A 18 172.01 -46.73 REMARK 500 GLU A 27 -90.99 -33.66 REMARK 500 LEU A 28 30.10 -87.63 REMARK 500 GLU A 79 -146.99 -127.46 REMARK 500 HIS A 168 -88.93 -65.91 REMARK 500 GLU A 171 -74.04 -157.01 REMARK 500 MET A 172 110.39 70.91 REMARK 500 PRO A 173 -129.38 -79.97 REMARK 500 GLN A 174 -55.02 -127.01 REMARK 500 VAL A 222 87.00 -50.53 REMARK 500 ALA A 229 13.23 -61.16 REMARK 500 ASP A 230 -149.04 -163.16 REMARK 500 PRO A 231 -116.28 -120.74 REMARK 500 SER B 7 59.12 -157.69 REMARK 500 SER B 8 -150.48 -105.85 REMARK 500 ALA B 9 10.08 -40.21 REMARK 500 ILE B 16 -61.87 78.97 REMARK 500 GLU B 18 172.01 -46.73 REMARK 500 GLU B 27 -22.12 -33.66 REMARK 500 SER B 29 24.34 -59.99 REMARK 500 GLU B 79 -146.99 -127.46 REMARK 500 HIS B 168 -88.92 -65.92 REMARK 500 GLU B 171 70.02 126.86 REMARK 500 MET B 172 110.39 82.80 REMARK 500 PRO B 173 -129.38 -79.97 REMARK 500 GLN B 174 -55.02 -127.01 REMARK 500 VAL B 222 87.00 -50.53 REMARK 500 ARG B 224 -26.79 -22.63 REMARK 500 ALA B 229 13.23 -61.16 REMARK 500 ASP B 230 -149.04 -163.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 27 LEU A 28 -114.31 REMARK 500 SER A 29 GLY A 30 100.68 REMARK 500 GLY A 47 ASP A 48 -147.80 REMARK 500 GLY A 223 ARG A 224 148.04 REMARK 500 SER B 8 ALA B 9 134.64 REMARK 500 GLY B 47 ASP B 48 -147.80 REMARK 500 SER B 170 GLU B 171 102.85 REMARK 500 GLU B 171 MET B 172 116.11 REMARK 500 GLY B 223 ARG B 224 126.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 46 0.16 SIDE CHAIN REMARK 500 ARG A 60 0.09 SIDE CHAIN REMARK 500 ARG A 71 0.14 SIDE CHAIN REMARK 500 ARG A 76 0.21 SIDE CHAIN REMARK 500 ARG A 131 0.08 SIDE CHAIN REMARK 500 ARG A 143 0.12 SIDE CHAIN REMARK 500 ARG A 155 0.20 SIDE CHAIN REMARK 500 ARG A 195 0.17 SIDE CHAIN REMARK 500 GLU B 27 0.07 SIDE CHAIN REMARK 500 ARG B 46 0.16 SIDE CHAIN REMARK 500 ARG B 60 0.09 SIDE CHAIN REMARK 500 ARG B 71 0.14 SIDE CHAIN REMARK 500 ARG B 76 0.21 SIDE CHAIN REMARK 500 ARG B 131 0.08 SIDE CHAIN REMARK 500 ARG B 143 0.12 SIDE CHAIN REMARK 500 ARG B 155 0.20 SIDE CHAIN REMARK 500 ARG B 195 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 27 21.75 REMARK 500 GLU B 27 -15.41 REMARK 500 REMARK 500 REMARK: NULL DBREF 7PZA A 1 234 UNP Q92SD2 Q92SD2_RHIME 1 234 DBREF 7PZA B 1 234 UNP Q92SD2 Q92SD2_RHIME 1 234 DBREF 7PZA C 1 18 PDB 7PZA 7PZA 1 18 DBREF 7PZA D 1 14 PDB 7PZA 7PZA 1 14 DBREF 7PZA E 1 18 PDB 7PZA 7PZA 1 18 DBREF 7PZA F 1 14 PDB 7PZA 7PZA 1 14 SEQADV 7PZA LEU A 235 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA GLU A 236 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS A 237 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS A 238 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS A 239 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS A 240 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS A 241 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS A 242 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS A 243 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS A 244 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA LEU B 235 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA GLU B 236 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS B 237 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS B 238 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS B 239 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS B 240 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS B 241 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS B 242 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS B 243 UNP Q92SD2 EXPRESSION TAG SEQADV 7PZA HIS B 244 UNP Q92SD2 EXPRESSION TAG SEQRES 1 A 244 MET ALA GLU VAL ILE ARG SER SER ALA PHE TRP ARG SER SEQRES 2 A 244 PHE PRO ILE PHE GLU GLU PHE ASP SER GLU THR LEU CYS SEQRES 3 A 244 GLU LEU SER GLY ILE ALA SER TYR ARG LYS TRP SER ALA SEQRES 4 A 244 GLY THR VAL ILE PHE GLN ARG GLY ASP GLN GLY ASP TYR SEQRES 5 A 244 MET ILE VAL VAL VAL SER GLY ARG ILE LYS LEU SER LEU SEQRES 6 A 244 PHE THR PRO GLN GLY ARG GLU LEU MET LEU ARG GLN HIS SEQRES 7 A 244 GLU ALA GLY ALA LEU PHE GLY GLU MET ALA LEU LEU ASP SEQRES 8 A 244 GLY GLN PRO ARG SER ALA ASP ALA THR ALA VAL THR ALA SEQRES 9 A 244 ALA GLU GLY TYR VAL ILE GLY LYS LYS ASP PHE LEU ALA SEQRES 10 A 244 LEU ILE THR GLN ARG PRO LYS THR ALA GLU ALA VAL ILE SEQRES 11 A 244 ARG PHE LEU CYS ALA GLN LEU ARG ASP THR THR ASP ARG SEQRES 12 A 244 LEU GLU THR ILE ALA LEU TYR ASP LEU ASN ALA ARG VAL SEQRES 13 A 244 ALA ARG PHE PHE LEU ALA THR LEU ARG GLN ILE HIS GLY SEQRES 14 A 244 SER GLU MET PRO GLN SER ALA ASN LEU ARG LEU THR LEU SEQRES 15 A 244 SER GLN THR ASP ILE ALA SER ILE LEU GLY ALA SER ARG SEQRES 16 A 244 PRO LYS VAL ASN ARG ALA ILE LEU SER LEU GLU GLU SER SEQRES 17 A 244 GLY ALA ILE LYS ARG ALA ASP GLY ILE ILE CYS CYS ASN SEQRES 18 A 244 VAL GLY ARG LEU LEU SER ILE ALA ASP PRO GLU GLU ASP SEQRES 19 A 244 LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 244 MET ALA GLU VAL ILE ARG SER SER ALA PHE TRP ARG SER SEQRES 2 B 244 PHE PRO ILE PHE GLU GLU PHE ASP SER GLU THR LEU CYS SEQRES 3 B 244 GLU LEU SER GLY ILE ALA SER TYR ARG LYS TRP SER ALA SEQRES 4 B 244 GLY THR VAL ILE PHE GLN ARG GLY ASP GLN GLY ASP TYR SEQRES 5 B 244 MET ILE VAL VAL VAL SER GLY ARG ILE LYS LEU SER LEU SEQRES 6 B 244 PHE THR PRO GLN GLY ARG GLU LEU MET LEU ARG GLN HIS SEQRES 7 B 244 GLU ALA GLY ALA LEU PHE GLY GLU MET ALA LEU LEU ASP SEQRES 8 B 244 GLY GLN PRO ARG SER ALA ASP ALA THR ALA VAL THR ALA SEQRES 9 B 244 ALA GLU GLY TYR VAL ILE GLY LYS LYS ASP PHE LEU ALA SEQRES 10 B 244 LEU ILE THR GLN ARG PRO LYS THR ALA GLU ALA VAL ILE SEQRES 11 B 244 ARG PHE LEU CYS ALA GLN LEU ARG ASP THR THR ASP ARG SEQRES 12 B 244 LEU GLU THR ILE ALA LEU TYR ASP LEU ASN ALA ARG VAL SEQRES 13 B 244 ALA ARG PHE PHE LEU ALA THR LEU ARG GLN ILE HIS GLY SEQRES 14 B 244 SER GLU MET PRO GLN SER ALA ASN LEU ARG LEU THR LEU SEQRES 15 B 244 SER GLN THR ASP ILE ALA SER ILE LEU GLY ALA SER ARG SEQRES 16 B 244 PRO LYS VAL ASN ARG ALA ILE LEU SER LEU GLU GLU SER SEQRES 17 B 244 GLY ALA ILE LYS ARG ALA ASP GLY ILE ILE CYS CYS ASN SEQRES 18 B 244 VAL GLY ARG LEU LEU SER ILE ALA ASP PRO GLU GLU ASP SEQRES 19 B 244 LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 C 18 DC DT DA DG DG DT DA DA DC DA DT DT DA SEQRES 2 C 18 DC DT DC DG DC SEQRES 1 D 14 DG DC DG DA DG DT DA DA DT DG DT DT DA SEQRES 2 D 14 DC SEQRES 1 E 18 DC DT DA DG DG DT DA DA DC DA DT DT DA SEQRES 2 E 18 DC DT DC DG DC SEQRES 1 F 14 DG DC DG DA DG DT DA DA DT DG DT DT DA SEQRES 2 F 14 DC HET CMP A 301 22 HET MG A 302 1 HET CMP B 301 22 HET MG B 302 1 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN CMP CYCLIC AMP; CAMP FORMUL 7 CMP 2(C10 H12 N5 O6 P) FORMUL 8 MG 2(MG 2+) FORMUL 11 HOH *5(H2 O) HELIX 1 AA1 PHE A 10 PHE A 14 5 5 HELIX 2 AA2 ASP A 21 LEU A 28 1 8 HELIX 3 AA3 GLU A 86 ASP A 91 1 6 HELIX 4 AA4 LYS A 112 ARG A 122 1 11 HELIX 5 AA5 PRO A 123 TYR A 150 1 28 HELIX 6 AA6 ASP A 151 HIS A 168 1 18 HELIX 7 AA7 SER A 183 GLY A 192 1 10 HELIX 8 AA8 SER A 194 SER A 208 1 15 HELIX 9 AA9 GLY A 223 ALA A 229 1 7 HELIX 10 AB1 PHE B 10 PHE B 14 5 5 HELIX 11 AB2 ASP B 21 SER B 29 1 9 HELIX 12 AB3 GLU B 86 ASP B 91 1 6 HELIX 13 AB4 LYS B 112 ARG B 122 1 11 HELIX 14 AB5 PRO B 123 TYR B 150 1 28 HELIX 15 AB6 ASP B 151 HIS B 168 1 18 HELIX 16 AB7 SER B 183 GLY B 192 1 10 HELIX 17 AB8 SER B 194 SER B 208 1 15 SHEET 1 AA1 4 ALA A 32 TRP A 37 0 SHEET 2 AA1 4 ALA A 105 GLY A 111 -1 O GLY A 107 N ARG A 35 SHEET 3 AA1 4 TYR A 52 SER A 58 -1 N SER A 58 O GLU A 106 SHEET 4 AA1 4 ALA A 82 PHE A 84 -1 O PHE A 84 N ILE A 54 SHEET 1 AA2 4 THR A 41 PHE A 44 0 SHEET 2 AA2 4 ASP A 98 ALA A 101 -1 O ALA A 101 N THR A 41 SHEET 3 AA2 4 ILE A 61 PHE A 66 -1 N LYS A 62 O THR A 100 SHEET 4 AA2 4 GLU A 72 HIS A 78 -1 O HIS A 78 N ILE A 61 SHEET 1 AA3 3 SER A 175 ARG A 179 0 SHEET 2 AA3 3 ILE A 217 ASN A 221 -1 O CYS A 220 N ALA A 176 SHEET 3 AA3 3 ILE A 211 ALA A 214 -1 N LYS A 212 O CYS A 219 SHEET 1 AA4 4 ALA B 32 TRP B 37 0 SHEET 2 AA4 4 ALA B 105 GLY B 111 -1 O ALA B 105 N TRP B 37 SHEET 3 AA4 4 TYR B 52 SER B 58 -1 N SER B 58 O GLU B 106 SHEET 4 AA4 4 ALA B 82 PHE B 84 -1 O PHE B 84 N ILE B 54 SHEET 1 AA5 4 THR B 41 PHE B 44 0 SHEET 2 AA5 4 ASP B 98 ALA B 101 -1 O ALA B 101 N THR B 41 SHEET 3 AA5 4 ILE B 61 PHE B 66 -1 N LYS B 62 O THR B 100 SHEET 4 AA5 4 GLU B 72 HIS B 78 -1 O HIS B 78 N ILE B 61 SHEET 1 AA6 3 SER B 175 ARG B 179 0 SHEET 2 AA6 3 ILE B 217 ASN B 221 -1 O CYS B 220 N ALA B 176 SHEET 3 AA6 3 ILE B 211 ALA B 214 -1 N ALA B 214 O ILE B 217 LINK OG1 THR B 146 MG MG B 302 1555 1555 2.78 CRYST1 50.100 69.930 200.390 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004990 0.00000 MTRIX1 1 -0.968595 -0.231729 0.090143 22.89700 1 MTRIX2 1 -0.246173 0.842747 -0.478724 16.29839 1 MTRIX3 1 0.034967 -0.485880 -0.873326 50.86094 1 MTRIX1 2 -0.952946 -0.290094 0.087971 23.54753 1 MTRIX2 2 -0.288768 0.780409 -0.554595 19.28279 1 MTRIX3 2 0.092232 -0.553902 -0.827457 50.51503 1