HEADER ISOMERASE 14-OCT-21 7Q03 TITLE KETOL-ACID REDUCTOISOMERASE FROM METHANOTHERMOCOCCUS TITLE 2 THERMOLITHOTROPHICUS IN THE CLOSE STATE WITH NADP AND MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOL-ACID REDUCTOISOMERASE FROM METHANOTHERMOCOCCUS COMPND 3 THERMOLITHOTROPHICUS; COMPND 4 CHAIN: A; COMPND 5 EC: 1.1.1.86 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS DSM SOURCE 3 2095; SOURCE 4 ORGANISM_TAXID: 523845; SOURCE 5 VARIANT: /; SOURCE 6 CELL_LINE: /; SOURCE 7 ATCC: /; SOURCE 8 ORGAN: /; SOURCE 9 TISSUE: / KEYWDS KETOL-ACID REDUCTOISOMERASE, KARI, METHANOGENIC ARCHAEA, KEYWDS 2 CONFORMATIONAL REARRANGEMENT, NATIVE PURIFICATION, OLIGOMERIZATION, KEYWDS 3 THERMOPHILE, BRANCHED-CHAIN KETO ACID, BIOSYNTHESIS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.N.LEMAIRE,M.MUELLER,T.WAGNER REVDAT 2 31-JAN-24 7Q03 1 REMARK REVDAT 1 08-DEC-21 7Q03 0 JRNL AUTH O.N.LEMAIRE,M.C.MULLER,J.KAHNT,T.WAGNER JRNL TITL STRUCTURAL REARRANGEMENTS OF A DODECAMERIC KETOL-ACID JRNL TITL 2 REDUCTOISOMERASE ISOLATED FROM A MARINE THERMOPHILIC JRNL TITL 3 METHANOGEN. JRNL REF BIOMOLECULES V. 11 2021 JRNL REFN ESSN 2218-273X JRNL PMID 34827677 JRNL DOI 10.3390/BIOM11111679 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 39.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0700 - 4.2100 0.95 2634 141 0.1684 0.1608 REMARK 3 2 4.2000 - 3.3400 0.94 2533 154 0.1668 0.1997 REMARK 3 3 3.3300 - 2.9100 0.94 2516 148 0.1959 0.2001 REMARK 3 4 2.9100 - 2.6500 0.95 2538 134 0.2002 0.2576 REMARK 3 5 2.6500 - 2.4600 0.95 2519 143 0.2083 0.2382 REMARK 3 6 2.4600 - 2.3100 0.95 2505 138 0.2173 0.2397 REMARK 3 7 2.3100 - 2.2000 0.95 2518 121 0.2343 0.2587 REMARK 3 8 2.2000 - 2.1000 0.96 2552 114 0.2691 0.2691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.3200 REMARK 3 OPERATOR: -L,-K,-H REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.4521 25.9410 -1.1575 REMARK 3 T TENSOR REMARK 3 T11: 0.3217 T22: 0.6558 REMARK 3 T33: 0.4426 T12: -0.0506 REMARK 3 T13: 0.0498 T23: -0.1000 REMARK 3 L TENSOR REMARK 3 L11: 0.5191 L22: 1.0771 REMARK 3 L33: 0.5525 L12: 0.2259 REMARK 3 L13: 0.5197 L23: -0.0866 REMARK 3 S TENSOR REMARK 3 S11: 0.1737 S12: 0.2837 S13: -0.2038 REMARK 3 S21: -0.2802 S22: 0.3859 S23: -0.8395 REMARK 3 S31: 0.6016 S32: 0.3669 S33: -0.0145 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.1965 25.1325 8.8463 REMARK 3 T TENSOR REMARK 3 T11: 0.3202 T22: 0.3313 REMARK 3 T33: 0.3683 T12: -0.0698 REMARK 3 T13: -0.1058 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 0.3692 L22: 0.4921 REMARK 3 L33: 0.8132 L12: 0.3786 REMARK 3 L13: 0.1991 L23: 0.3631 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: -0.0801 S13: 0.0098 REMARK 3 S21: 0.1821 S22: 0.0468 S23: -0.2328 REMARK 3 S31: -0.0548 S32: 0.0541 S33: 0.0588 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4830 1.3016 4.6431 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: 0.2601 REMARK 3 T33: 0.1557 T12: 0.0197 REMARK 3 T13: -0.0135 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.3921 L22: 0.9006 REMARK 3 L33: -0.1762 L12: 0.1808 REMARK 3 L13: 0.0045 L23: 0.4002 REMARK 3 S TENSOR REMARK 3 S11: -0.0720 S12: 0.0051 S13: -0.0376 REMARK 3 S21: 0.0150 S22: 0.0961 S23: -0.1297 REMARK 3 S31: 0.1104 S32: 0.1177 S33: -0.0025 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE REFINEMENT WAS PERFORMED WITH TLS REMARK 3 AND USING INTENSITY-BASED TWIN REFINEMENT WITH THE FOLLOWING REMARK 3 TWIN LAW -L,-K,-H REMARK 4 REMARK 4 7Q03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1292118695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.73913 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21408 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 0.74400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4TSK REMARK 200 REMARK 200 REMARK: TRANSPARENT PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE RESERVOIR WAS FILLED WITH 90 UL OF REMARK 280 CRYSTALLISATION SOLUTION: 20% (W/V) PEG 6000, 100 MM TRIS/HCL PH REMARK 280 8.0 AND 200 MM LITHIUM CHLORIDE. THE PROTEIN WAS CRYSTALLIZED AT REMARK 280 13 MG/ML IN THE FOLLOWING BUFFER 25 MM TRIS/HCL PH 7.6, 2 MM REMARK 280 DITHIOTHREITOL, 10% (V/V) GLYCEROL. DROPS OF 0.7 UL PROTEIN WITH REMARK 280 0.7 UL OF CRYSTALLISATION SOLUTION WERE APPLIED ON THE SHELF. REMARK 280 CRYSTALS WERE SOAKED IN THE CRYSTALLISATION SOLUTION REMARK 280 SUPPLEMENTED WITH 30% (V/V) ETHYLENE GLYCOL FOR FEW SECONDS REMARK 280 BEFORE FREEZING IN LIQUID NITROGEN., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 64.94100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.94100 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 64.94100 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 64.94100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 64.94100 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 64.94100 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 64.94100 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 64.94100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 64.94100 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 64.94100 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 64.94100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 64.94100 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 64.94100 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 64.94100 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 64.94100 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 64.94100 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 64.94100 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 64.94100 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 64.94100 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 64.94100 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 64.94100 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 64.94100 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 64.94100 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 64.94100 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 64.94100 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 64.94100 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 64.94100 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 64.94100 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 64.94100 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 64.94100 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 64.94100 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 64.94100 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 64.94100 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 64.94100 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 64.94100 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 64.94100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 129520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 129550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 50 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 231 O HOH A 601 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 601 O HOH A 652 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 25 39.53 -148.36 REMARK 500 ILE A 94 -60.68 -141.79 REMARK 500 LYS A 131 58.28 -92.57 REMARK 500 PHE A 145 -167.86 -113.64 REMARK 500 VAL A 198 -60.06 -132.36 REMARK 500 CYS A 229 -54.26 -128.96 REMARK 500 LYS A 242 -2.88 -143.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 509 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 191 OD1 REMARK 620 2 GLU A 231 OE2 145.9 REMARK 620 3 HOH A 601 O 140.4 67.7 REMARK 620 4 HOH A 604 O 66.9 81.5 122.2 REMARK 620 5 HOH A 631 O 65.5 146.0 92.4 132.1 REMARK 620 6 HOH A 652 O 86.5 103.2 58.9 84.3 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 510 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 191 OD2 REMARK 620 2 GLU A 195 OE1 86.3 REMARK 620 3 HOH A 628 O 94.8 82.0 REMARK 620 4 HOH A 636 O 160.3 82.5 99.7 REMARK 620 5 HOH A 641 O 83.6 164.7 87.3 110.2 REMARK 620 6 HOH A 652 O 104.8 84.1 155.2 58.0 109.6 REMARK 620 N 1 2 3 4 5 DBREF 7Q03 A 1 330 PDB 7Q03 7Q03 1 330 SEQRES 1 A 330 MET MET LYS VAL PHE TYR ASP SER ASP THR THR PHE ASP SEQRES 2 A 330 ALA VAL LYS ASP LYS THR ILE ALA VAL ILE GLY TYR GLY SEQRES 3 A 330 SER GLN GLY ARG ALA GLN SER LEU ASN MET LYS ASP SER SEQRES 4 A 330 GLY LEU LYS VAL VAL VAL GLY LEU ARG PRO ASN GLY ALA SEQRES 5 A 330 SER TRP ASN LYS ALA LYS GLU ASP GLY HIS GLU VAL LEU SEQRES 6 A 330 SER ILE GLU GLU ALA ALA GLU LYS ALA ASP ILE ILE HIS SEQRES 7 A 330 ILE LEU ILE PRO ASP GLU ILE GLN GLY ASP VAL TYR ASN SEQRES 8 A 330 LYS GLN ILE LYS PRO TYR LEU LYS GLU GLY LYS THR LEU SEQRES 9 A 330 SER PHE SER HIS GLY TYR ASN ILE HIS TYR GLY TYR ILE SEQRES 10 A 330 VAL PRO PRO GLU GLY VAL ASN VAL VAL MET VAL ALA PRO SEQRES 11 A 330 LYS SER PRO GLY ALA MET VAL ARG ARG THR TYR GLU GLU SEQRES 12 A 330 GLY PHE GLY VAL PRO GLY LEU VAL CYS VAL GLU LYS ASP SEQRES 13 A 330 ALA THR GLY ASP ALA LEU ASP ILE ALA LEU GLY MET ALA SEQRES 14 A 330 LYS GLY VAL GLY LEU THR ARG ALA GLY VAL ILE GLN THR SEQRES 15 A 330 THR PHE ARG GLU GLU THR GLU THR ASP LEU PHE GLY GLU SEQRES 16 A 330 GLN ALA VAL LEU CYS GLY GLY VAL THR GLU LEU ILE LYS SEQRES 17 A 330 ALA GLY PHE GLU THR LEU VAL GLU ALA GLY TYR SER PRO SEQRES 18 A 330 GLU MET ALA TYR PHE GLU THR CYS HIS GLU LEU LYS LEU SEQRES 19 A 330 ILE ILE ASP LEU ILE TYR GLN LYS GLY PHE ALA GLY MET SEQRES 20 A 330 TRP ASN ASP VAL SER ASN THR ALA GLU TYR GLY GLY LEU SEQRES 21 A 330 THR ARG ARG SER ARG VAL ILE ASN GLU GLN SER ARG GLN SEQRES 22 A 330 GLU MET ARG LYS ILE LEU LYS GLU ILE GLN ASP GLY ARG SEQRES 23 A 330 PHE THR LYS GLU TRP ALA LEU GLU ASN ILE SER GLY LYS SEQRES 24 A 330 ALA HIS LEU ASN SER MET ARG ARG ILE GLU SER GLU LEU SEQRES 25 A 330 LEU ILE GLU GLU VAL GLY ALA LYS LEU ARG LYS MET CYS SEQRES 26 A 330 GLY LEU GLN LYS ASP HET GOL A 501 6 HET GOL A 502 6 HET EDO A 503 4 HET EDO A 504 4 HET GOL A 505 6 HET TOE A 506 11 HET EDO A 507 4 HET NAP A 508 48 HET MG A 509 1 HET MG A 510 1 HET SO4 A 511 5 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM TOE 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 GOL 3(C3 H8 O3) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 TOE C7 H16 O4 FORMUL 9 NAP C21 H28 N7 O17 P3 FORMUL 10 MG 2(MG 2+) FORMUL 12 SO4 O4 S 2- FORMUL 13 HOH *63(H2 O) HELIX 1 AA1 TYR A 6 THR A 10 5 5 HELIX 2 AA2 PHE A 12 LYS A 16 5 5 HELIX 3 AA3 GLY A 26 SER A 39 1 14 HELIX 4 AA4 ALA A 52 ASP A 60 1 9 HELIX 5 AA5 ILE A 67 ALA A 74 1 8 HELIX 6 AA6 PRO A 82 GLU A 84 5 3 HELIX 7 AA7 ILE A 85 ILE A 94 1 10 HELIX 8 AA8 LYS A 95 LEU A 98 5 4 HELIX 9 AA9 GLY A 109 TYR A 114 1 6 HELIX 10 AB1 PRO A 133 GLU A 143 1 11 HELIX 11 AB2 ASP A 160 GLY A 173 1 14 HELIX 12 AB3 LEU A 174 ALA A 177 5 4 HELIX 13 AB4 THR A 183 VAL A 198 1 16 HELIX 14 AB5 CYS A 200 ALA A 217 1 18 HELIX 15 AB6 SER A 220 CYS A 229 1 10 HELIX 16 AB7 CYS A 229 VAL A 251 1 23 HELIX 17 AB8 SER A 252 ILE A 267 1 16 HELIX 18 AB9 ASN A 268 ASP A 284 1 17 HELIX 19 AC1 GLY A 285 SER A 297 1 13 HELIX 20 AC2 LYS A 299 GLU A 311 1 13 HELIX 21 AC3 LEU A 312 CYS A 325 1 14 SHEET 1 AA1 9 VAL A 4 PHE A 5 0 SHEET 2 AA1 9 VAL A 179 THR A 182 -1 O VAL A 179 N PHE A 5 SHEET 3 AA1 9 GLY A 149 LYS A 155 1 N VAL A 151 O THR A 182 SHEET 4 AA1 9 ASN A 124 PRO A 130 -1 N VAL A 125 O GLU A 154 SHEET 5 AA1 9 THR A 103 PHE A 106 1 N LEU A 104 O ASN A 124 SHEET 6 AA1 9 ILE A 76 ILE A 79 1 N ILE A 77 O SER A 105 SHEET 7 AA1 9 ILE A 20 ILE A 23 1 N ALA A 21 O HIS A 78 SHEET 8 AA1 9 VAL A 43 LEU A 47 1 O VAL A 44 N VAL A 22 SHEET 9 AA1 9 VAL A 64 SER A 66 1 O LEU A 65 N VAL A 45 LINK OD1 ASP A 191 MG MG A 509 1555 1555 2.36 LINK OD2 ASP A 191 MG MG A 510 1555 1555 2.23 LINK OE1 GLU A 195 MG MG A 510 1555 1555 2.51 LINK OE2 GLU A 231 MG MG A 509 1555 4555 2.69 LINK MG MG A 509 O HOH A 601 1555 4555 2.02 LINK MG MG A 509 O HOH A 604 1555 4555 2.20 LINK MG MG A 509 O HOH A 631 1555 1555 2.76 LINK MG MG A 509 O HOH A 652 1555 1555 2.37 LINK MG MG A 510 O HOH A 628 1555 1555 2.25 LINK MG MG A 510 O HOH A 636 1555 4555 2.59 LINK MG MG A 510 O HOH A 641 1555 1555 2.31 LINK MG MG A 510 O HOH A 652 1555 1555 2.40 CRYST1 129.882 129.882 129.882 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007699 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007699 0.00000