HEADER DNA BINDING PROTEIN 15-OCT-21 7Q0N TITLE ARBITRIUM RECEPTOR FROM KATMIRA PHAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARBITRIUM RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (45-MER); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (45-MER); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLACEAE; SOURCE 3 ORGANISM_TAXID: 186817; SOURCE 4 GENE: AIMR, GOE11_C00800; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: BACILLACEAE; SOURCE 10 ORGANISM_TAXID: 186817; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: BACILLACEAE; SOURCE 14 ORGANISM_TAXID: 186817 KEYWDS ARBITRIUM, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.GALLEGO DEL SOL,A.MARINA REVDAT 3 31-JAN-24 7Q0N 1 REMARK REVDAT 2 06-JUL-22 7Q0N 1 JRNL REVDAT 1 01-JUN-22 7Q0N 0 JRNL AUTH F.GALLEGO DEL SOL,N.QUILES-PUCHALT,A.BRADY,J.R.PENADES, JRNL AUTH 2 A.MARINA JRNL TITL INSIGHTS INTO THE MECHANISM OF ACTION OF THE ARBITRIUM JRNL TITL 2 COMMUNICATION SYSTEM IN SPBETA PHAGES. JRNL REF NAT COMMUN V. 13 3627 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35750663 JRNL DOI 10.1038/S41467-022-31144-3 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 47746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2549 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2648 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6356 REMARK 3 NUCLEIC ACID ATOMS : 1845 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.53000 REMARK 3 B22 (A**2) : 3.42000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.393 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.268 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.838 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8598 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7244 ; 0.005 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11967 ; 1.929 ; 1.665 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16792 ; 1.303 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 776 ; 6.281 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 360 ;40.554 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1272 ;19.649 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;28.484 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1187 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8423 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1824 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 386 B 1 386 13226 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2064 -0.0427 54.9532 REMARK 3 T TENSOR REMARK 3 T11: 0.0623 T22: 0.3346 REMARK 3 T33: 0.1446 T12: -0.0073 REMARK 3 T13: 0.0509 T23: -0.0807 REMARK 3 L TENSOR REMARK 3 L11: 3.1532 L22: 0.7107 REMARK 3 L33: 1.8344 L12: -1.3685 REMARK 3 L13: 1.2943 L23: -0.5389 REMARK 3 S TENSOR REMARK 3 S11: 0.1510 S12: 0.3473 S13: -0.2612 REMARK 3 S21: -0.0657 S22: -0.1513 S23: 0.1757 REMARK 3 S31: 0.0353 S32: -0.3182 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 386 REMARK 3 ORIGIN FOR THE GROUP (A): 47.6627 5.4204 26.1447 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.4060 REMARK 3 T33: 0.1491 T12: 0.0919 REMARK 3 T13: 0.0999 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 1.3153 L22: 0.5905 REMARK 3 L33: 3.4790 L12: 0.0868 REMARK 3 L13: 0.8206 L23: 1.0423 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.4330 S13: 0.0704 REMARK 3 S21: -0.2211 S22: -0.1950 S23: 0.0125 REMARK 3 S31: -0.2717 S32: -0.1852 S33: 0.1758 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 45 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5962 2.9679 14.6446 REMARK 3 T TENSOR REMARK 3 T11: 0.3792 T22: 1.2169 REMARK 3 T33: 0.4251 T12: 0.1065 REMARK 3 T13: 0.2042 T23: -0.0923 REMARK 3 L TENSOR REMARK 3 L11: 6.7780 L22: 0.5003 REMARK 3 L33: 4.8322 L12: -1.7757 REMARK 3 L13: -5.6956 L23: 1.4714 REMARK 3 S TENSOR REMARK 3 S11: 0.2457 S12: 0.8998 S13: 0.2448 REMARK 3 S21: -0.1101 S22: -0.1005 S23: -0.0555 REMARK 3 S31: -0.0763 S32: -0.7490 S33: -0.1452 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 45 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6114 2.2478 14.6731 REMARK 3 T TENSOR REMARK 3 T11: 0.3960 T22: 1.2831 REMARK 3 T33: 0.5052 T12: 0.1089 REMARK 3 T13: 0.2630 T23: -0.0759 REMARK 3 L TENSOR REMARK 3 L11: 6.3614 L22: 0.5858 REMARK 3 L33: 5.9824 L12: -1.8744 REMARK 3 L13: -6.1384 L23: 1.8302 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: 1.1316 S13: -0.1236 REMARK 3 S21: -0.0178 S22: -0.2154 S23: 0.0655 REMARK 3 S31: 0.1523 S32: -0.9877 S33: 0.2710 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7Q0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1292118735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50324 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 140.627 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 1.54700 REMARK 200 R SYM FOR SHELL (I) : 1.54700 REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6HP7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, SODIUM ACETATE, LITIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.93300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 77 OP1 DT D 17 2.14 REMARK 500 OE2 GLU A 346 NH2 ARG B 379 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 2 N1 DG C 2 C2 0.048 REMARK 500 DG C 2 N7 DG C 2 C8 0.041 REMARK 500 DC C 3 N1 DC C 3 C2 0.110 REMARK 500 DC C 3 N3 DC C 3 C4 0.076 REMARK 500 DC C 3 C4 DC C 3 C5 0.113 REMARK 500 DC C 4 N1 DC C 4 C2 0.083 REMARK 500 DC C 4 N1 DC C 4 C6 0.052 REMARK 500 DC C 4 N3 DC C 4 C4 0.059 REMARK 500 DC C 4 C4 DC C 4 C5 0.127 REMARK 500 DC C 42 N1 DC C 42 C2 0.064 REMARK 500 DC C 42 C4 DC C 42 C5 0.066 REMARK 500 DA C 43 C6 DA C 43 N1 0.053 REMARK 500 DA C 44 N1 DA C 44 C2 0.075 REMARK 500 DA C 44 N3 DA C 44 C4 0.039 REMARK 500 DC C 45 N1 DC C 45 C2 0.081 REMARK 500 DC C 45 N1 DC C 45 C6 0.037 REMARK 500 DC C 45 C4 DC C 45 C5 0.102 REMARK 500 DG D 1 N7 DG D 1 C8 0.051 REMARK 500 DT D 2 N1 DT D 2 C2 0.074 REMARK 500 DT D 2 C5 DT D 2 C7 0.046 REMARK 500 DT D 3 N1 DT D 3 C2 0.078 REMARK 500 DT D 3 C2 DT D 3 N3 0.053 REMARK 500 DT D 3 C4 DT D 3 C5 0.070 REMARK 500 DT D 3 C5 DT D 3 C7 0.072 REMARK 500 DA D 5 N9 DA D 5 C4 0.074 REMARK 500 DA D 32 P DA D 32 O5' 0.074 REMARK 500 DG D 43 C5 DG D 43 N7 0.045 REMARK 500 DC D 44 N1 DC D 44 C2 0.088 REMARK 500 DC D 44 N3 DC D 44 C4 0.044 REMARK 500 DC D 44 C4 DC D 44 C5 0.103 REMARK 500 DC D 45 N1 DC D 45 C2 0.062 REMARK 500 DC D 45 C4 DC D 45 C5 0.059 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 1 C8 - N9 - C1' ANGL. DEV. = 9.7 DEGREES REMARK 500 DG C 1 C4 - N9 - C1' ANGL. DEV. = -8.7 DEGREES REMARK 500 DG C 1 C3' - O3' - P ANGL. DEV. = -8.6 DEGREES REMARK 500 DC C 3 C6 - N1 - C2 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC C 3 C5 - C6 - N1 ANGL. DEV. = -3.3 DEGREES REMARK 500 DC C 3 C3' - O3' - P ANGL. DEV. = -8.3 DEGREES REMARK 500 DC C 4 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC C 4 C6 - N1 - C2 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC C 4 C5 - C6 - N1 ANGL. DEV. = -3.7 DEGREES REMARK 500 DC C 4 C3' - O3' - P ANGL. DEV. = -7.5 DEGREES REMARK 500 DT C 6 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DT C 6 C3' - O3' - P ANGL. DEV. = -10.2 DEGREES REMARK 500 DC C 7 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT C 10 C3' - O3' - P ANGL. DEV. = -11.9 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DA C 13 C3' - O3' - P ANGL. DEV. = -7.6 DEGREES REMARK 500 DT C 14 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG C 15 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG C 15 C8 - N9 - C1' ANGL. DEV. = 8.8 DEGREES REMARK 500 DT C 16 O4' - C1' - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT C 17 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 DA C 18 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA C 18 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT C 19 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA C 20 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA C 20 C3' - O3' - P ANGL. DEV. = -7.9 DEGREES REMARK 500 DA C 21 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA C 22 C3' - O3' - P ANGL. DEV. = -7.4 DEGREES REMARK 500 DC C 25 C3' - O3' - P ANGL. DEV. = -8.7 DEGREES REMARK 500 DT C 26 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT C 26 C3' - O3' - P ANGL. DEV. = -10.0 DEGREES REMARK 500 DA C 28 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA C 28 C3' - O3' - P ANGL. DEV. = -8.8 DEGREES REMARK 500 DA C 36 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG C 39 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG C 39 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 39 C8 - N9 - C1' ANGL. DEV. = 9.4 DEGREES REMARK 500 DG C 39 C4 - N9 - C1' ANGL. DEV. = -9.8 DEGREES REMARK 500 DA C 40 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA C 40 C3' - O3' - P ANGL. DEV. = -13.3 DEGREES REMARK 500 DT C 41 C3' - O3' - P ANGL. DEV. = -9.3 DEGREES REMARK 500 DA C 44 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 45 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC C 45 C5 - C6 - N1 ANGL. DEV. = -3.3 DEGREES REMARK 500 DG D 1 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 DG D 1 C8 - N9 - C1' ANGL. DEV. = 8.1 DEGREES REMARK 500 DG D 1 C3' - O3' - P ANGL. DEV. = -8.3 DEGREES REMARK 500 DT D 2 C4 - C5 - C6 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT D 2 C5 - C6 - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 82 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 106.54 -59.63 REMARK 500 SER A 180 0.27 -67.35 REMARK 500 ASP A 245 99.55 -164.31 REMARK 500 LYS A 261 125.67 -38.01 REMARK 500 ASN A 263 77.95 -153.79 REMARK 500 GLU A 310 58.98 -94.45 REMARK 500 GLU A 323 11.20 -67.77 REMARK 500 ASP B 75 106.91 -58.54 REMARK 500 SER B 180 2.90 -68.76 REMARK 500 ASP B 245 97.74 -164.66 REMARK 500 ASN B 263 78.60 -153.72 REMARK 500 GLU B 310 59.01 -92.04 REMARK 500 GLU B 323 2.86 -62.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 530 DISTANCE = 7.71 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6S7L RELATED DB: PDB REMARK 900 RELATED ID: 6S7I RELATED DB: PDB DBREF1 7Q0N A 1 386 UNP A0A7G5CHT1_9CAUD DBREF2 7Q0N A A0A7G5CHT1 1 386 DBREF1 7Q0N B 1 386 UNP A0A7G5CHT1_9CAUD DBREF2 7Q0N B A0A7G5CHT1 1 386 DBREF 7Q0N C 1 45 PDB 7Q0N 7Q0N 1 45 DBREF 7Q0N D 1 45 PDB 7Q0N 7Q0N 1 45 SEQRES 1 A 386 MET GLU LEU ILE ARG ILE ALA MET LYS LYS ASP LEU GLU SEQRES 2 A 386 ASN ASP ASN SER LEU MET ASN LYS TRP ALA THR VAL ALA SEQRES 3 A 386 GLY LEU LYS ASN PRO ASN PRO LEU TYR ASP PHE LEU ASN SEQRES 4 A 386 HIS ASP GLY LYS THR PHE ASN GLU PHE SER SER ILE VAL SEQRES 5 A 386 ASN ILE VAL LYS SER GLN TYR PRO ASP ARG GLU TYR GLU SEQRES 6 A 386 LEU MET LYS ASP TYR CYS LEU ASN LEU ASP VAL LYS THR SEQRES 7 A 386 LYS ALA ALA ARG SER ALA LEU GLU TYR ALA ASP ALA ASN SEQRES 8 A 386 MET PHE PHE GLU ILE GLU ASP ALA LEU ILE ASP SER MET SEQRES 9 A 386 ILE SER CYS SER ASN MET LYS SER LYS GLU TYR GLY LYS SEQRES 10 A 386 VAL TYR LYS ILE HIS ARG GLU LEU SER LYS GLY GLU ILE SEQRES 11 A 386 ASP VAL PHE GLU ALA SER ALA ASN ILE GLY LYS GLN ARG SEQRES 12 A 386 ILE LYS THR ALA GLU MET ASN ILE PHE SER LYS MET LEU SEQRES 13 A 386 LEU MET TYR ASP CYS LEU ASN LYS GLY ASN PHE ALA PRO SEQRES 14 A 386 MET MET LEU LEU PHE GLN GLN ILE ASP LEU SER GLU ILE SEQRES 15 A 386 LYS GLU ASN ARG TYR LEU LYS ASN SER PHE GLU THR ARG SEQRES 16 A 386 ILE ASN VAL LEU LEU SER ASN ILE TYR LEU ASN GLU ASN SEQRES 17 A 386 ASN LEU GLU LEU CYS ARG GLU TYR ALA GLN LYS ALA ILE SEQRES 18 A 386 SER SER THR ASP THR GLN ARG PHE LEU VAL PHE SER TYR SEQRES 19 A 386 LEU THR ILE GLY THR SER TYR ILE PHE SER ASP PHE ASN SEQRES 20 A 386 LEU SER LYS GLN ASN TYR LEU ILE GLY LEU LYS PHE ALA SEQRES 21 A 386 LYS GLY ASN PRO GLY PHE GLU GLU PHE PHE LYS ARG ASN SEQRES 22 A 386 LEU SER PHE LEU ASN ASN PHE TRP ASN LYS GLU ASN GLU SEQRES 23 A 386 TRP ILE ASN TYR ASP SER ASP ALA VAL THR ASP MET GLN SEQRES 24 A 386 GLU VAL ILE PHE GLU LEU ILE ASN HIS LYS GLU LEU SER SEQRES 25 A 386 LYS ALA LEU GLN LEU LEU ASN LYS LEU GLU GLU ARG ASP SEQRES 26 A 386 GLN ASN GLU ASN GLU LEU GLY PHE HIS TYR TYR LEU LYS SEQRES 27 A 386 GLY LEU ILE THR ASN GLU LYS GLU ALA PHE PHE LYS SER SEQRES 28 A 386 VAL GLU TYR PHE LYS ALA SER GLN ASP LYS LEU SER ILE SEQRES 29 A 386 LYS MET PRO LEU ILE GLN LEU GLU LYS MET GLY GLU ASN SEQRES 30 A 386 PRO ARG LEU LEU LYS ILE ILE THR MET SEQRES 1 B 386 MET GLU LEU ILE ARG ILE ALA MET LYS LYS ASP LEU GLU SEQRES 2 B 386 ASN ASP ASN SER LEU MET ASN LYS TRP ALA THR VAL ALA SEQRES 3 B 386 GLY LEU LYS ASN PRO ASN PRO LEU TYR ASP PHE LEU ASN SEQRES 4 B 386 HIS ASP GLY LYS THR PHE ASN GLU PHE SER SER ILE VAL SEQRES 5 B 386 ASN ILE VAL LYS SER GLN TYR PRO ASP ARG GLU TYR GLU SEQRES 6 B 386 LEU MET LYS ASP TYR CYS LEU ASN LEU ASP VAL LYS THR SEQRES 7 B 386 LYS ALA ALA ARG SER ALA LEU GLU TYR ALA ASP ALA ASN SEQRES 8 B 386 MET PHE PHE GLU ILE GLU ASP ALA LEU ILE ASP SER MET SEQRES 9 B 386 ILE SER CYS SER ASN MET LYS SER LYS GLU TYR GLY LYS SEQRES 10 B 386 VAL TYR LYS ILE HIS ARG GLU LEU SER LYS GLY GLU ILE SEQRES 11 B 386 ASP VAL PHE GLU ALA SER ALA ASN ILE GLY LYS GLN ARG SEQRES 12 B 386 ILE LYS THR ALA GLU MET ASN ILE PHE SER LYS MET LEU SEQRES 13 B 386 LEU MET TYR ASP CYS LEU ASN LYS GLY ASN PHE ALA PRO SEQRES 14 B 386 MET MET LEU LEU PHE GLN GLN ILE ASP LEU SER GLU ILE SEQRES 15 B 386 LYS GLU ASN ARG TYR LEU LYS ASN SER PHE GLU THR ARG SEQRES 16 B 386 ILE ASN VAL LEU LEU SER ASN ILE TYR LEU ASN GLU ASN SEQRES 17 B 386 ASN LEU GLU LEU CYS ARG GLU TYR ALA GLN LYS ALA ILE SEQRES 18 B 386 SER SER THR ASP THR GLN ARG PHE LEU VAL PHE SER TYR SEQRES 19 B 386 LEU THR ILE GLY THR SER TYR ILE PHE SER ASP PHE ASN SEQRES 20 B 386 LEU SER LYS GLN ASN TYR LEU ILE GLY LEU LYS PHE ALA SEQRES 21 B 386 LYS GLY ASN PRO GLY PHE GLU GLU PHE PHE LYS ARG ASN SEQRES 22 B 386 LEU SER PHE LEU ASN ASN PHE TRP ASN LYS GLU ASN GLU SEQRES 23 B 386 TRP ILE ASN TYR ASP SER ASP ALA VAL THR ASP MET GLN SEQRES 24 B 386 GLU VAL ILE PHE GLU LEU ILE ASN HIS LYS GLU LEU SER SEQRES 25 B 386 LYS ALA LEU GLN LEU LEU ASN LYS LEU GLU GLU ARG ASP SEQRES 26 B 386 GLN ASN GLU ASN GLU LEU GLY PHE HIS TYR TYR LEU LYS SEQRES 27 B 386 GLY LEU ILE THR ASN GLU LYS GLU ALA PHE PHE LYS SER SEQRES 28 B 386 VAL GLU TYR PHE LYS ALA SER GLN ASP LYS LEU SER ILE SEQRES 29 B 386 LYS MET PRO LEU ILE GLN LEU GLU LYS MET GLY GLU ASN SEQRES 30 B 386 PRO ARG LEU LEU LYS ILE ILE THR MET SEQRES 1 C 45 DG DG DC DC DA DT DC DA DC DT DA DG DA SEQRES 2 C 45 DT DG DT DT DA DT DA DA DA DA DA DC DT SEQRES 3 C 45 DT DA DA DT DA DT DT DT DA DA DG DT DG SEQRES 4 C 45 DA DT DC DA DA DC SEQRES 1 D 45 DG DT DT DG DA DT DC DA DC DT DT DA DA SEQRES 2 D 45 DA DT DA DT DT DA DA DG DT DT DT DT DT SEQRES 3 D 45 DA DT DA DA DC DA DT DC DT DA DG DT DG SEQRES 4 D 45 DA DT DG DG DC DC HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 7(O4 S 2-) FORMUL 12 HOH *49(H2 O) HELIX 1 AA1 GLU A 2 GLU A 13 1 12 HELIX 2 AA2 SER A 17 GLY A 27 1 11 HELIX 3 AA3 PRO A 31 HIS A 40 1 10 HELIX 4 AA4 PHE A 48 TYR A 59 1 12 HELIX 5 AA5 ARG A 62 LEU A 72 1 11 HELIX 6 AA6 THR A 78 ASN A 91 1 14 HELIX 7 AA7 PHE A 93 SER A 106 1 14 HELIX 8 AA8 ASN A 109 GLY A 128 1 20 HELIX 9 AA9 ASP A 131 GLN A 142 1 12 HELIX 10 AB1 THR A 146 LYS A 164 1 19 HELIX 11 AB2 ASN A 166 GLN A 175 1 10 HELIX 12 AB3 GLN A 176 ILE A 177 5 2 HELIX 13 AB4 ASP A 178 ILE A 182 5 5 HELIX 14 AB5 ASN A 185 GLU A 207 1 23 HELIX 15 AB6 ASN A 209 SER A 223 1 15 HELIX 16 AB7 THR A 226 SER A 240 1 15 HELIX 17 AB8 ASP A 245 ALA A 260 1 16 HELIX 18 AB9 ASN A 263 ASN A 282 1 20 HELIX 19 AC1 ALA A 294 HIS A 308 1 15 HELIX 20 AC2 GLU A 310 GLU A 323 1 14 HELIX 21 AC3 ASN A 327 ASN A 343 1 17 HELIX 22 AC4 GLU A 344 SER A 358 1 15 HELIX 23 AC5 ILE A 364 MET A 374 1 11 HELIX 24 AC6 ASN A 377 THR A 385 1 9 HELIX 25 AC7 GLU B 2 GLU B 13 1 12 HELIX 26 AC8 SER B 17 GLY B 27 1 11 HELIX 27 AC9 PRO B 31 HIS B 40 1 10 HELIX 28 AD1 PHE B 48 TYR B 59 1 12 HELIX 29 AD2 ARG B 62 LEU B 72 1 11 HELIX 30 AD3 THR B 78 ASN B 91 1 14 HELIX 31 AD4 PHE B 93 SER B 106 1 14 HELIX 32 AD5 ASN B 109 GLY B 128 1 20 HELIX 33 AD6 ASP B 131 GLN B 142 1 12 HELIX 34 AD7 THR B 146 LYS B 164 1 19 HELIX 35 AD8 ASN B 166 GLN B 175 1 10 HELIX 36 AD9 GLN B 176 ILE B 177 5 2 HELIX 37 AE1 ASP B 178 ILE B 182 5 5 HELIX 38 AE2 ASN B 185 GLU B 207 1 23 HELIX 39 AE3 ASN B 209 SER B 223 1 15 HELIX 40 AE4 THR B 226 TYR B 241 1 16 HELIX 41 AE5 ASP B 245 ALA B 260 1 16 HELIX 42 AE6 ASN B 263 ASN B 282 1 20 HELIX 43 AE7 ALA B 294 HIS B 308 1 15 HELIX 44 AE8 GLU B 310 GLU B 323 1 14 HELIX 45 AE9 ASN B 327 ASN B 343 1 17 HELIX 46 AF1 GLU B 344 SER B 358 1 15 HELIX 47 AF2 ILE B 364 MET B 374 1 11 HELIX 48 AF3 ASN B 377 THR B 385 1 9 CRYST1 132.719 39.866 143.015 90.00 100.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007535 0.000000 0.001395 0.00000 SCALE2 0.000000 0.025084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007111 0.00000