HEADER HYDROLASE 17-OCT-21 7Q0Y TITLE CRYSTAL STRUCTURE OF CTX-M-14 IN COMPLEX WITH BORTEZOMIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LACTAMASE, ANTIBIOTIC, RESISTENCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.WERNER,M.PERBANDT,W.HINRICHS,A.PRESTER,H.ROHDE,M.AEPFELBACHER, AUTHOR 2 C.BETZEL REVDAT 2 31-JAN-24 7Q0Y 1 REMARK REVDAT 1 13-APR-22 7Q0Y 0 JRNL AUTH M.PERBANDT,N.WERNER,A.PRESTER,H.ROHDE,M.AEPFELBACHER, JRNL AUTH 2 W.HINRICHS,C.BETZEL JRNL TITL STRUCTURAL BASIS TO REPURPOSE BORON-BASED PROTEASOME JRNL TITL 2 INHIBITORS BORTEZOMIB AND IXAZOMIB AS BETA-LACTAMASE JRNL TITL 3 INHIBITORS. JRNL REF SCI REP V. 12 5510 2022 JRNL REFN ESSN 2045-2322 JRNL PMID 35365689 JRNL DOI 10.1038/S41598-022-09392-6 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 104656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.128 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.620 REMARK 3 FREE R VALUE TEST SET COUNT : 3791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1200 - 3.8900 0.99 3775 141 0.1288 0.1516 REMARK 3 2 3.8900 - 3.0900 1.00 3762 147 0.1102 0.1316 REMARK 3 3 3.0900 - 2.7000 0.99 3763 141 0.1123 0.1156 REMARK 3 4 2.7000 - 2.4500 1.00 3778 141 0.1150 0.1131 REMARK 3 5 2.4500 - 2.2800 1.00 3758 146 0.1099 0.1109 REMARK 3 6 2.2800 - 2.1400 1.00 3803 142 0.1045 0.1307 REMARK 3 7 2.1400 - 2.0400 1.00 3771 141 0.1063 0.1305 REMARK 3 8 2.0400 - 1.9500 0.99 3793 146 0.1112 0.1147 REMARK 3 9 1.9500 - 1.8700 0.99 3697 140 0.1153 0.1473 REMARK 3 10 1.8700 - 1.8100 1.00 3836 141 0.1241 0.1384 REMARK 3 11 1.8100 - 1.7500 1.00 3782 145 0.1222 0.1482 REMARK 3 12 1.7500 - 1.7000 0.99 3789 138 0.1234 0.1317 REMARK 3 13 1.7000 - 1.6600 1.00 3761 142 0.1319 0.1543 REMARK 3 14 1.6600 - 1.6200 0.99 3792 144 0.1347 0.1698 REMARK 3 15 1.6200 - 1.5800 0.99 3758 141 0.1346 0.1492 REMARK 3 16 1.5800 - 1.5500 0.99 3758 135 0.1403 0.1809 REMARK 3 17 1.5500 - 1.5100 0.99 3738 140 0.1446 0.1797 REMARK 3 18 1.5100 - 1.4900 0.99 3802 143 0.1484 0.1687 REMARK 3 19 1.4900 - 1.4600 0.98 3717 141 0.1520 0.1850 REMARK 3 20 1.4600 - 1.4300 0.99 3775 141 0.1611 0.1750 REMARK 3 21 1.4300 - 1.4100 0.98 3713 139 0.1676 0.1850 REMARK 3 22 1.4100 - 1.3900 0.98 3700 142 0.1828 0.1821 REMARK 3 23 1.3900 - 1.3700 0.97 3733 135 0.1826 0.1874 REMARK 3 24 1.3700 - 1.3500 0.96 3644 138 0.1992 0.2319 REMARK 3 25 1.3500 - 1.3300 0.97 3633 136 0.1945 0.1851 REMARK 3 26 1.3300 - 1.3100 0.95 3630 134 0.2018 0.2017 REMARK 3 27 1.3100 - 1.3000 0.90 3404 131 0.2221 0.2329 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.089 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.887 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2068 REMARK 3 ANGLE : 1.224 2823 REMARK 3 CHIRALITY : 0.086 334 REMARK 3 PLANARITY : 0.013 372 REMARK 3 DIHEDRAL : 13.824 768 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3172 -15.5005 -22.9188 REMARK 3 T TENSOR REMARK 3 T11: 0.0659 T22: 0.0516 REMARK 3 T33: 0.0500 T12: 0.0059 REMARK 3 T13: -0.0059 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.2426 L22: 2.3847 REMARK 3 L33: 2.4428 L12: 1.0678 REMARK 3 L13: -0.1124 L23: 0.9472 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: 0.1841 S13: -0.0972 REMARK 3 S21: -0.1269 S22: 0.1034 S23: -0.0513 REMARK 3 S31: 0.0581 S32: 0.0806 S33: -0.0406 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6152 -9.4836 -7.5727 REMARK 3 T TENSOR REMARK 3 T11: 0.0798 T22: 0.0716 REMARK 3 T33: 0.0644 T12: -0.0050 REMARK 3 T13: 0.0036 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.9826 L22: 0.7365 REMARK 3 L33: 0.8119 L12: -0.4169 REMARK 3 L13: -0.4061 L23: 0.4799 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: -0.0057 S13: -0.1110 REMARK 3 S21: 0.0498 S22: -0.0195 S23: 0.0660 REMARK 3 S31: 0.0920 S32: -0.0202 S33: 0.0540 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8884 10.3583 6.1946 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.1113 REMARK 3 T33: 0.0663 T12: -0.0056 REMARK 3 T13: 0.0101 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 6.7750 L22: 4.4894 REMARK 3 L33: 1.8541 L12: 4.0424 REMARK 3 L13: -2.0774 L23: -0.1569 REMARK 3 S TENSOR REMARK 3 S11: 0.2435 S12: -0.5712 S13: 0.3985 REMARK 3 S21: 0.2930 S22: -0.2999 S23: 0.3584 REMARK 3 S31: 0.0204 S32: 0.0748 S33: 0.0408 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1434 13.2696 -3.2233 REMARK 3 T TENSOR REMARK 3 T11: 0.0774 T22: 0.0703 REMARK 3 T33: 0.0733 T12: -0.0008 REMARK 3 T13: 0.0007 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.5614 L22: 1.0278 REMARK 3 L33: 1.0002 L12: 0.1639 REMARK 3 L13: -0.9971 L23: 0.0963 REMARK 3 S TENSOR REMARK 3 S11: 0.0876 S12: -0.0758 S13: 0.2655 REMARK 3 S21: 0.0391 S22: -0.0119 S23: 0.0225 REMARK 3 S31: -0.1211 S32: 0.0378 S33: -0.0671 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4770 -2.0667 -0.2809 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.1052 REMARK 3 T33: 0.0718 T12: -0.0016 REMARK 3 T13: -0.0084 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.7070 L22: 0.5423 REMARK 3 L33: 0.2914 L12: -0.2182 REMARK 3 L13: -0.1479 L23: 0.0217 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: -0.1254 S13: -0.0350 REMARK 3 S21: 0.0612 S22: 0.0232 S23: -0.0072 REMARK 3 S31: 0.0074 S32: 0.0466 S33: -0.0060 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0762 -12.2918 -7.7483 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.0571 REMARK 3 T33: 0.0447 T12: -0.0080 REMARK 3 T13: 0.0049 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 8.3395 L22: 1.3335 REMARK 3 L33: 1.1570 L12: -3.0248 REMARK 3 L13: 1.1984 L23: -0.0517 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 0.0035 S13: -0.2336 REMARK 3 S21: -0.0424 S22: -0.0072 S23: 0.1240 REMARK 3 S31: 0.0679 S32: -0.0401 S33: 0.0228 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5502 -2.3126 -13.3873 REMARK 3 T TENSOR REMARK 3 T11: 0.0686 T22: 0.0798 REMARK 3 T33: 0.0489 T12: -0.0061 REMARK 3 T13: -0.0129 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.0003 L22: 0.5264 REMARK 3 L33: 0.3238 L12: 0.1037 REMARK 3 L13: -0.1201 L23: -0.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: 0.1299 S13: -0.0196 REMARK 3 S21: -0.0754 S22: 0.0365 S23: 0.0415 REMARK 3 S31: 0.0477 S32: -0.1041 S33: -0.0242 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1631 -4.4306 -16.9101 REMARK 3 T TENSOR REMARK 3 T11: 0.0613 T22: 0.0514 REMARK 3 T33: 0.0275 T12: 0.0034 REMARK 3 T13: -0.0038 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 4.3604 L22: 0.8034 REMARK 3 L33: 0.9482 L12: 0.1625 REMARK 3 L13: 0.4340 L23: -0.1575 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: 0.0921 S13: -0.0436 REMARK 3 S21: -0.0472 S22: 0.0217 S23: 0.0022 REMARK 3 S31: -0.0051 S32: -0.0085 S33: 0.0184 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0700 -8.3368 -25.6363 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.0873 REMARK 3 T33: 0.0637 T12: 0.0050 REMARK 3 T13: -0.0028 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 7.6245 L22: 7.4564 REMARK 3 L33: 5.9969 L12: 5.9271 REMARK 3 L13: 2.2428 L23: 2.3657 REMARK 3 S TENSOR REMARK 3 S11: -0.1496 S12: 0.1994 S13: -0.0310 REMARK 3 S21: -0.2363 S22: 0.0295 S23: 0.1845 REMARK 3 S31: 0.1023 S32: -0.1610 S33: 0.0842 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Q0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1292118769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55064 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 35.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6GTH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG8000, 0.2 M LITHIUM SULFATE, REMARK 280 0.1 M SODIUM ACETATE, PH 4.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.65150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.12200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.16550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.12200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.65150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.16550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 88 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 111 CD CE NZ REMARK 480 GLN A 253 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 417 O HOH A 673 1.62 REMARK 500 O HOH A 441 O HOH A 683 1.73 REMARK 500 O HOH A 415 O HOH A 505 1.75 REMARK 500 O HOH A 651 O HOH A 697 1.80 REMARK 500 O HOH A 430 O HOH A 515 1.87 REMARK 500 O HOH A 797 O HOH A 845 1.87 REMARK 500 O HOH A 575 O HOH A 665 1.90 REMARK 500 O HOH A 565 O HOH A 621 1.91 REMARK 500 O HOH A 409 O HOH A 782 1.92 REMARK 500 O HOH A 574 O HOH A 588 1.95 REMARK 500 O HOH A 684 O HOH A 706 1.95 REMARK 500 O HOH A 730 O HOH A 752 2.00 REMARK 500 O HOH A 503 O HOH A 794 2.02 REMARK 500 O HOH A 712 O HOH A 752 2.02 REMARK 500 O HOH A 795 O HOH A 818 2.06 REMARK 500 O HOH A 486 O HOH A 717 2.07 REMARK 500 O HOH A 597 O HOH A 614 2.07 REMARK 500 O HOH A 407 O HOH A 420 2.07 REMARK 500 O HOH A 746 O HOH A 824 2.10 REMARK 500 O HOH A 545 O HOH A 842 2.10 REMARK 500 OE1 GLN A 192 O HOH A 403 2.12 REMARK 500 O HOH A 408 O HOH A 600 2.12 REMARK 500 O HOH A 490 O HOH A 735 2.12 REMARK 500 O HOH A 632 O HOH A 808 2.12 REMARK 500 O HOH A 624 O HOH A 790 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 794 O HOH A 845 1455 1.80 REMARK 500 O HOH A 824 O HOH A 837 4455 1.84 REMARK 500 O HOH A 631 O HOH A 730 4445 1.92 REMARK 500 O HOH A 405 O HOH A 620 3554 1.94 REMARK 500 O HOH A 829 O HOH A 861 2555 2.06 REMARK 500 O HOH A 666 O HOH A 686 3554 2.06 REMARK 500 O HOH A 600 O HOH A 730 4445 2.06 REMARK 500 O HOH A 599 O HOH A 672 3554 2.14 REMARK 500 O HOH A 673 O HOH A 701 1455 2.16 REMARK 500 O HOH A 719 O HOH A 797 4455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -136.50 49.62 REMARK 500 VAL A 103 -136.99 -115.06 REMARK 500 SER A 220 -128.94 -105.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 865 DISTANCE = 6.64 ANGSTROMS DBREF1 7Q0Y A 26 289 UNP A0A2S1JJX2_KLEPN DBREF2 7Q0Y A A0A2S1JJX2 25 286 SEQADV 7Q0Y GLU A 25 UNP A0A2S1JJX EXPRESSION TAG SEQRES 1 A 263 GLU THR SER ALA VAL GLN GLN LYS LEU ALA ALA LEU GLU SEQRES 2 A 263 LYS SER SER GLY GLY ARG LEU GLY VAL ALA LEU ILE ASP SEQRES 3 A 263 THR ALA ASP ASN THR GLN VAL LEU TYR ARG GLY ASP GLU SEQRES 4 A 263 ARG PHE PRO MET CYS SER THR SER LYS VAL MET ALA ALA SEQRES 5 A 263 ALA ALA VAL LEU LYS GLN SER GLU THR GLN LYS GLN LEU SEQRES 6 A 263 LEU ASN GLN PRO VAL GLU ILE LYS PRO ALA ASP LEU VAL SEQRES 7 A 263 ASN TYR ASN PRO ILE ALA GLU LYS HIS VAL ASN GLY THR SEQRES 8 A 263 MET THR LEU ALA GLU LEU SER ALA ALA ALA LEU GLN TYR SEQRES 9 A 263 SER ASP ASN THR ALA MET ASN LYS LEU ILE ALA GLN LEU SEQRES 10 A 263 GLY GLY PRO GLY GLY VAL THR ALA PHE ALA ARG ALA ILE SEQRES 11 A 263 GLY ASP GLU THR PHE ARG LEU ASP ARG THR GLU PRO THR SEQRES 12 A 263 LEU ASN THR ALA ILE PRO GLY ASP PRO ARG ASP THR THR SEQRES 13 A 263 THR PRO ARG ALA MET ALA GLN THR LEU ARG GLN LEU THR SEQRES 14 A 263 LEU GLY HIS ALA LEU GLY GLU THR GLN ARG ALA GLN LEU SEQRES 15 A 263 VAL THR TRP LEU LYS GLY ASN THR THR GLY ALA ALA SER SEQRES 16 A 263 ILE ARG ALA GLY LEU PRO THR SER TRP THR VAL GLY ASP SEQRES 17 A 263 LYS THR GLY SER GLY ASP TYR GLY THR THR ASN ASP ILE SEQRES 18 A 263 ALA VAL ILE TRP PRO GLN GLY ARG ALA PRO LEU VAL LEU SEQRES 19 A 263 VAL THR TYR PHE THR GLN PRO GLN GLN ASN ALA GLU SER SEQRES 20 A 263 ARG ARG ASP VAL LEU ALA SER ALA ALA ARG ILE ILE ALA SEQRES 21 A 263 GLU GLY LEU HET BO2 A 301 53 HET GOL A 302 14 HET ACT A 303 7 HET CL A 304 1 HETNAM BO2 N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2- HETNAM 2 BO2 YLCARBONYL)-L-PHENYLALANINAMIDE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETSYN BO2 BORTEZOMIB HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BO2 C19 H25 B N4 O4 FORMUL 3 GOL C3 H8 O3 FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 CL CL 1- FORMUL 6 HOH *465(H2 O) HELIX 1 AA1 SER A 27 GLY A 41 1 15 HELIX 2 AA2 CYS A 69 THR A 71 5 3 HELIX 3 AA3 SER A 72 GLU A 85 1 14 HELIX 4 AA4 GLN A 89 ASN A 92 5 4 HELIX 5 AA5 LYS A 98 LEU A 102 5 5 HELIX 6 AA6 ILE A 108 VAL A 113 5 6 HELIX 7 AA7 LEU A 119 TYR A 129 1 11 HELIX 8 AA8 ASP A 131 LEU A 142 1 12 HELIX 9 AA9 GLY A 144 ILE A 155 1 12 HELIX 10 AB1 PRO A 167 THR A 171 5 5 HELIX 11 AB2 THR A 182 LEU A 195 1 14 HELIX 12 AB3 GLY A 200 GLY A 213 1 14 HELIX 13 AB4 SER A 220 LEU A 225 5 6 HELIX 14 AB5 ARG A 274 GLU A 287 1 14 SHEET 1 AA1 5 GLN A 56 TYR A 60 0 SHEET 2 AA1 5 ARG A 43 ASP A 50 -1 N VAL A 46 O TYR A 60 SHEET 3 AA1 5 LEU A 258 THR A 265 -1 O TYR A 263 N GLY A 45 SHEET 4 AA1 5 THR A 243 TRP A 251 -1 N ILE A 250 O LEU A 258 SHEET 5 AA1 5 THR A 230 GLY A 238 -1 N GLY A 236 O ASN A 245 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AA3 2 PRO A 94 ILE A 97 0 SHEET 2 AA3 2 GLY A 115 THR A 118 -1 O MET A 117 N VAL A 95 LINK OG SER A 70 B26 BO2 A 301 1555 1555 1.56 CISPEP 1 GLU A 166 PRO A 167 0 6.27 CRYST1 41.303 62.331 86.244 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024211 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011595 0.00000