data_7Q2Q # _entry.id 7Q2Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.361 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7Q2Q pdb_00007q2q 10.2210/pdb7q2q/pdb WWPDB D_1292118886 ? ? EMDB EMD-13780 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'cryo iDPC-STEM structure recorded with CSA 3.5' _pdbx_database_related.db_id EMD-13780 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7Q2Q _pdbx_database_status.recvd_initial_deposition_date 2021-10-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sachse, C.' 1 ? 'Leidl, M.L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Methods _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1548-7105 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 19 _citation.language ? _citation.page_first 1126 _citation.page_last 1136 _citation.title 'Single-particle cryo-EM structures from iDPC-STEM at near-atomic resolution.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41592-022-01586-0 _citation.pdbx_database_id_PubMed 36064775 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lazic, I.' 1 0000-0001-5238-952X primary 'Wirix, M.' 2 ? primary 'Leidl, M.L.' 3 0000-0001-8896-1647 primary 'de Haas, F.' 4 ? primary 'Mann, D.' 5 0000-0002-9106-9358 primary 'Beckers, M.' 6 ? primary 'Pechnikova, E.V.' 7 ? primary 'Muller-Caspary, K.' 8 ? primary 'Egoavil, R.' 9 ? primary 'Bosch, E.G.T.' 10 ? primary 'Sachse, C.' 11 0000-0002-1168-5143 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Capsid protein' 17091.998 1 ? ? ? ? 2 polymer nat ;RNA (5'-R(P*GP*AP*A)-3') ; 958.660 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Coat protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWT ; ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWT ; A ? 2 polyribonucleotide no no GAA GAA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TYR n 1 3 SER n 1 4 ILE n 1 5 THR n 1 6 THR n 1 7 PRO n 1 8 SER n 1 9 GLN n 1 10 PHE n 1 11 VAL n 1 12 PHE n 1 13 LEU n 1 14 SER n 1 15 SER n 1 16 ALA n 1 17 TRP n 1 18 ALA n 1 19 ASP n 1 20 PRO n 1 21 ILE n 1 22 GLU n 1 23 LEU n 1 24 ILE n 1 25 ASN n 1 26 LEU n 1 27 CYS n 1 28 THR n 1 29 ASN n 1 30 ALA n 1 31 LEU n 1 32 GLY n 1 33 ASN n 1 34 GLN n 1 35 PHE n 1 36 GLN n 1 37 THR n 1 38 GLN n 1 39 GLN n 1 40 ALA n 1 41 ARG n 1 42 THR n 1 43 VAL n 1 44 VAL n 1 45 GLN n 1 46 ARG n 1 47 GLN n 1 48 PHE n 1 49 SER n 1 50 GLU n 1 51 VAL n 1 52 TRP n 1 53 LYS n 1 54 PRO n 1 55 SER n 1 56 PRO n 1 57 GLN n 1 58 VAL n 1 59 THR n 1 60 VAL n 1 61 ARG n 1 62 PHE n 1 63 PRO n 1 64 ASP n 1 65 SER n 1 66 ASP n 1 67 PHE n 1 68 LYS n 1 69 VAL n 1 70 TYR n 1 71 ARG n 1 72 TYR n 1 73 ASN n 1 74 ALA n 1 75 VAL n 1 76 LEU n 1 77 ASP n 1 78 PRO n 1 79 LEU n 1 80 VAL n 1 81 THR n 1 82 ALA n 1 83 LEU n 1 84 LEU n 1 85 GLY n 1 86 ALA n 1 87 PHE n 1 88 ASP n 1 89 THR n 1 90 ARG n 1 91 ASN n 1 92 ARG n 1 93 ILE n 1 94 ILE n 1 95 GLU n 1 96 VAL n 1 97 GLU n 1 98 ASN n 1 99 GLN n 1 100 ALA n 1 101 ASN n 1 102 PRO n 1 103 THR n 1 104 THR n 1 105 ALA n 1 106 GLU n 1 107 THR n 1 108 LEU n 1 109 ASP n 1 110 ALA n 1 111 THR n 1 112 ARG n 1 113 ARG n 1 114 VAL n 1 115 ASP n 1 116 ASP n 1 117 ALA n 1 118 THR n 1 119 VAL n 1 120 ALA n 1 121 ILE n 1 122 ARG n 1 123 SER n 1 124 ALA n 1 125 ILE n 1 126 ASN n 1 127 ASN n 1 128 LEU n 1 129 ILE n 1 130 VAL n 1 131 GLU n 1 132 LEU n 1 133 ILE n 1 134 ARG n 1 135 GLY n 1 136 THR n 1 137 GLY n 1 138 SER n 1 139 TYR n 1 140 ASN n 1 141 ARG n 1 142 SER n 1 143 SER n 1 144 PHE n 1 145 GLU n 1 146 SER n 1 147 SER n 1 148 SER n 1 149 GLY n 1 150 LEU n 1 151 VAL n 1 152 TRP n 1 153 THR n 2 1 G n 2 2 A n 2 3 A n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 153 'TMV, Tobacco mosaic virus (strain U1)' 'Tobacco mosaic virus (vulgare)' 12243 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 3 'TMV, Tobacco mosaic virus (strain U1)' 'Tobacco mosaic virus (vulgare)' 12243 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP CAPSD_TMV P69687 ? 1 ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWT ; 2 2 PDB 7Q2Q 7Q2Q ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7Q2Q A 1 ? 153 ? P69687 2 ? 154 ? 1 153 2 2 7Q2Q B 1 ? 3 ? 7Q2Q 1 ? 3 ? 1 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7Q2Q _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7Q2Q _struct.title 'cryo iDPC-STEM structure recorded with CSA 3.5' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7Q2Q _struct_keywords.text 'tobacco mosaic virus, RNA virus, VIRUS' _struct_keywords.pdbx_keywords VIRUS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 10 ? SER A 14 ? PHE A 10 SER A 14 5 ? 5 HELX_P HELX_P2 AA2 ASP A 19 ? ASN A 29 ? ASP A 19 ASN A 29 1 ? 11 HELX_P HELX_P3 AA3 ALA A 30 ? GLY A 32 ? ALA A 30 GLY A 32 5 ? 3 HELX_P HELX_P4 AA4 THR A 37 ? SER A 49 ? THR A 37 SER A 49 1 ? 13 HELX_P HELX_P5 AA5 VAL A 75 ? PHE A 87 ? VAL A 75 PHE A 87 1 ? 13 HELX_P HELX_P6 AA6 ARG A 92 ? GLU A 97 ? ARG A 92 GLU A 97 1 ? 6 HELX_P HELX_P7 AA7 THR A 103 ? ILE A 133 ? THR A 103 ILE A 133 1 ? 31 HELX_P HELX_P8 AA8 SER A 142 ? GLY A 149 ? SER A 142 GLY A 149 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 17 ? ALA A 18 ? TRP A 17 ALA A 18 AA1 2 LYS A 68 ? TYR A 70 ? LYS A 68 TYR A 70 AA1 3 SER A 138 ? TYR A 139 ? SER A 138 TYR A 139 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 18 ? N ALA A 18 O VAL A 69 ? O VAL A 69 AA1 2 3 N LYS A 68 ? N LYS A 68 O TYR A 139 ? O TYR A 139 # _atom_sites.entry_id 7Q2Q _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 TRP 52 52 52 TRP TRP A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 ARG 134 134 134 ARG ARG A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 TRP 152 152 152 TRP TRP A . n A 1 153 THR 153 153 153 THR THR A . n B 2 1 G 1 1 1 G G B . n B 2 2 A 2 2 2 A A B . n B 2 3 A 3 3 3 A A B . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email c.sachse@fz-juelich.de _pdbx_contact_author.name_first CARSTEN _pdbx_contact_author.name_last SACHSE _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1168-5143 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details 'UCSF CHIMERA 1.15_b42258.' _pdbx_struct_assembly.oligomeric_details 98-meric _pdbx_struct_assembly.oligomeric_count 98 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49 ; _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.000000 0.000000 0.000000 0.00000 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 2 'point symmetry operation' ? ? 0.521456 0.853278 0.000000 -64.26694 -0.853278 0.521456 0.000000 228.40737 0.000000 -0.000000 1.000000 -26.75200 3 'point symmetry operation' ? ? 0.803441 0.595384 0.000000 -68.39853 -0.595384 0.803441 0.000000 135.81813 0.000000 -0.000000 1.000000 -25.34400 4 'point symmetry operation' ? ? 0.968104 0.250549 0.000000 -37.49897 -0.250549 0.968104 0.000000 48.43933 0.000000 -0.000000 1.000000 -23.93600 5 'point symmetry operation' ? ? 0.991399 -0.130872 0.000000 23.91962 0.130872 0.991399 0.000000 -20.96956 -0.000000 0.000000 1.000000 -22.52800 6 'point symmetry operation' ? ? 0.869926 -0.493183 0.000000 106.88862 0.493183 0.869926 0.000000 -62.27312 -0.000000 0.000000 1.000000 -21.12000 7 'point symmetry operation' ? ? 0.621421 -0.783477 0.000000 199.29248 0.783477 0.621421 0.000000 -69.43999 -0.000000 0.000000 1.000000 -19.71200 8 'point symmetry operation' ? ? 0.282174 -0.959363 0.000000 287.63795 0.959363 0.282174 0.000000 -41.42364 -0.000000 0.000000 1.000000 -18.30400 9 'point symmetry operation' ? ? -0.098278 -0.995159 0.000000 359.02440 0.995159 -0.098278 0.000000 17.68485 0.000000 0.000000 1.000000 -16.89600 10 'point symmetry operation' ? ? -0.464378 -0.885637 0.000000 403.02762 0.885637 -0.464378 0.000000 99.25417 0.000000 0.000000 1.000000 -15.48800 11 'point symmetry operation' ? ? -0.762668 -0.646790 0.000000 413.22207 0.646790 -0.762668 0.000000 191.37317 0.000000 0.000000 1.000000 -14.08000 12 'point symmetry operation' ? ? -0.949590 -0.313495 0.000000 388.11909 0.313495 -0.949590 0.000000 280.59020 0.000000 0.000000 1.000000 -12.67200 13 'point symmetry operation' ? ? -0.997847 0.065577 0.000000 331.38434 -0.065577 -0.997847 0.000000 353.87735 0.000000 0.000000 1.000000 -11.26400 14 'point symmetry operation' ? ? -0.900395 0.435074 0.000000 251.30251 -0.435074 -0.900395 0.000000 400.53288 0.000000 0.000000 1.000000 -9.85600 15 'point symmetry operation' ? ? -0.671462 0.741039 0.000000 159.56753 -0.741039 -0.671462 0.000000 413.74392 0.000000 0.000000 1.000000 -8.44800 16 'point symmetry operation' ? ? -0.344479 0.938794 0.000000 69.57499 -0.938794 -0.344479 0.000000 391.58133 0.000000 0.000000 1.000000 -7.04000 17 'point symmetry operation' ? ? 0.032806 0.999462 0.000000 -5.53397 -0.999462 0.032806 0.000000 337.28141 0.000000 -0.000000 1.000000 -5.63200 18 'point symmetry operation' ? ? 0.405301 0.914183 0.000000 -54.79157 -0.914183 0.405301 0.000000 258.77328 0.000000 -0.000000 1.000000 -4.22400 19 'point symmetry operation' ? ? 0.718612 0.695411 0.000000 -71.00499 -0.695411 0.718612 0.000000 167.52108 0.000000 -0.000000 1.000000 -2.81600 20 'point symmetry operation' ? ? 0.926988 0.375092 0.000000 -51.80665 -0.375092 0.926988 0.000000 76.84991 0.000000 -0.000000 1.000000 -1.40800 21 'point symmetry operation' ? ? 0.926988 -0.375092 0.000000 76.84991 0.375092 0.926988 0.000000 -51.80665 -0.000000 0.000000 1.000000 1.40800 22 'point symmetry operation' ? ? 0.718612 -0.695411 0.000000 167.52108 0.695411 0.718612 0.000000 -71.00499 -0.000000 0.000000 1.000000 2.81600 23 'point symmetry operation' ? ? 0.405301 -0.914183 0.000000 258.77328 0.914183 0.405301 0.000000 -54.79157 -0.000000 0.000000 1.000000 4.22400 24 'point symmetry operation' ? ? 0.032806 -0.999462 0.000000 337.28141 0.999462 0.032806 0.000000 -5.53397 -0.000000 0.000000 1.000000 5.63200 25 'point symmetry operation' ? ? -0.344479 -0.938794 0.000000 391.58133 0.938794 -0.344479 0.000000 69.57499 0.000000 0.000000 1.000000 7.04000 26 'point symmetry operation' ? ? -0.671462 -0.741039 0.000000 413.74392 0.741039 -0.671462 0.000000 159.56753 0.000000 0.000000 1.000000 8.44800 27 'point symmetry operation' ? ? -0.900395 -0.435074 0.000000 400.53288 0.435074 -0.900395 0.000000 251.30251 0.000000 0.000000 1.000000 9.85600 28 'point symmetry operation' ? ? -0.997847 -0.065577 0.000000 353.87735 0.065577 -0.997847 0.000000 331.38434 0.000000 0.000000 1.000000 11.26400 29 'point symmetry operation' ? ? -0.949590 0.313495 0.000000 280.59020 -0.313495 -0.949590 0.000000 388.11909 0.000000 0.000000 1.000000 12.67200 30 'point symmetry operation' ? ? -0.762668 0.646790 0.000000 191.37317 -0.646790 -0.762668 0.000000 413.22207 0.000000 0.000000 1.000000 14.08000 31 'point symmetry operation' ? ? -0.464378 0.885637 0.000000 99.25417 -0.885637 -0.464378 0.000000 403.02762 0.000000 0.000000 1.000000 15.48800 32 'point symmetry operation' ? ? -0.098278 0.995159 0.000000 17.68485 -0.995159 -0.098278 0.000000 359.02440 0.000000 0.000000 1.000000 16.89600 33 'point symmetry operation' ? ? 0.282174 0.959363 0.000000 -41.42364 -0.959363 0.282174 0.000000 287.63795 0.000000 -0.000000 1.000000 18.30400 34 'point symmetry operation' ? ? 0.621421 0.783477 0.000000 -69.43999 -0.783477 0.621421 0.000000 199.29248 0.000000 -0.000000 1.000000 19.71200 35 'point symmetry operation' ? ? 0.869926 0.493183 0.000000 -62.27312 -0.493183 0.869926 0.000000 106.88862 0.000000 -0.000000 1.000000 21.12000 36 'point symmetry operation' ? ? 0.991399 0.130872 0.000000 -20.96956 -0.130872 0.991399 0.000000 23.91962 0.000000 -0.000000 1.000000 22.52800 37 'point symmetry operation' ? ? 0.968104 -0.250549 0.000000 48.43933 0.250549 0.968104 0.000000 -37.49897 -0.000000 0.000000 1.000000 23.93600 38 'point symmetry operation' ? ? 0.803441 -0.595384 0.000000 135.81813 0.595384 0.803441 0.000000 -68.39853 -0.000000 0.000000 1.000000 25.34400 39 'point symmetry operation' ? ? 0.521456 -0.853278 0.000000 228.40737 0.853278 0.521456 0.000000 -64.26694 -0.000000 0.000000 1.000000 26.75200 40 'point symmetry operation' ? ? 0.163326 -0.986572 0.000000 312.68672 0.986572 0.163326 0.000000 -25.70753 -0.000000 0.000000 1.000000 28.16000 41 'point symmetry operation' ? ? -0.218654 -0.975802 0.000000 376.34931 0.975802 -0.218654 0.000000 41.64908 0.000000 0.000000 1.000000 29.56800 42 'point symmetry operation' ? ? -0.568705 -0.822541 0.000000 410.09881 0.822541 -0.568705 0.000000 127.96715 0.000000 0.000000 1.000000 30.97600 43 'point symmetry operation' ? ? -0.835712 -0.549169 0.000000 409.00696 0.549169 -0.835712 0.000000 220.64210 0.000000 0.000000 1.000000 32.38400 44 'point symmetry operation' ? ? -0.980683 -0.195604 0.000000 373.23319 0.195604 -0.980683 0.000000 306.14108 0.000000 0.000000 1.000000 33.79200 45 'point symmetry operation' ? ? -0.982450 0.186524 0.000000 308.00137 -0.186524 -0.982450 0.000000 371.97912 0.000000 0.000000 1.000000 35.20000 46 'point symmetry operation' ? ? -0.840756 0.541415 0.000000 222.83696 -0.541415 -0.840756 0.000000 408.54223 0.000000 0.000000 1.000000 36.60800 47 'point symmetry operation' ? ? -0.576290 0.817245 0.000000 130.17608 -0.817245 -0.576290 0.000000 410.49128 0.000000 0.000000 1.000000 38.01600 48 'point symmetry operation' ? ? -0.227671 0.973738 0.000000 43.54952 -0.973738 -0.227671 0.000000 377.54168 0.000000 0.000000 1.000000 39.42400 49 'point symmetry operation' ? ? 0.154193 0.988041 0.000000 -24.39310 -0.988041 0.154193 0.000000 314.50487 0.000000 -0.000000 1.000000 40.83200 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-09-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _em_3d_fitting.entry_id 7Q2Q _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 4UDV # _em_3d_reconstruction.entry_id 7Q2Q _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 1392 _em_3d_reconstruction.resolution 4.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Tobacco mosaic virus' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7Q2Q _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details iDPC-STEM _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode OTHER _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'blot force of +10 and a duration for blotting of 10 seconds' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7Q2Q _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7Q2Q _em_experiment.id 1 _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 5 ? ? -95.06 -78.63 2 1 SER A 8 ? ? -89.37 34.43 3 1 LEU A 13 ? ? -97.78 34.21 4 1 SER A 15 ? ? -65.30 82.97 5 1 ALA A 16 ? ? -150.00 19.88 6 1 SER A 55 ? ? -129.39 -59.33 7 1 GLN A 99 ? ? -117.15 -92.29 8 1 ARG A 141 ? ? 86.80 3.33 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 131 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 12243 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Tobacco mosaic virus (strain vulgare)' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 22.03 _em_helical_entity.axial_rise_per_subunit 1.408 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details iDPC-STEM # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 35 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model OTHER _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'MODEL REFINEMENT' ? ? ? ? 1 ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? RELION 3.1 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 90 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Helmholtz Association' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #