HEADER ANTIMICROBIAL PROTEIN 28-OCT-21 7Q3N TITLE CRYO-EM OF THE COMPLEX BETWEEN HUMAN UROMODULIN (UMOD)/TAMM-HORSFALL TITLE 2 PROTEIN (THP) AND THE FIMH LECTIN DOMAIN FROM UROPATHOGENIC E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROMODULIN; COMPND 3 CHAIN: U; COMPND 4 SYNONYM: TAMM-HORSFALL URINARY GLYCOPROTEIN,THP; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TYPE 1 FIMBIRAL ADHESIN FIMH; COMPND 7 CHAIN: F; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN UTI89 / UPEC); SOURCE 7 ORGANISM_TAXID: 364106; SOURCE 8 GENE: FIMH, UTI89_C5017; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: OVEREXPRESS C43(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PD441-SR KEYWDS EGF DOMAIN, DECOY MODULE, BETA-HAIRPIN, D10C DOMAIN, D8C DOMAIN, KEYWDS 2 EXTRACELLULAR MATRIX, GLYCOPROTEIN, N-GLYCAN, HIGH-MANNOSE SUGAR, KEYWDS 3 CELL ADHESION, ANTIMICROBIAL PROTEIN, BACTERIAL ADHESIN, TYPE I KEYWDS 4 PILUS, SUGAR BINDING PROTEIN, LECTIN, URINARY TRACT INFECTION, UTI, KEYWDS 5 UROPATHOGENIC E. COLI, UPEC EXPDTA ELECTRON MICROSCOPY AUTHOR L.JOVINE,C.XU,A.STSIAPANAVA,M.CARRONI,K.TUNYASUVUNAKOOL,J.JUMPER,B.WU REVDAT 4 23-OCT-24 7Q3N 1 REMARK REVDAT 3 30-MAR-22 7Q3N 1 JRNL REVDAT 2 23-MAR-22 7Q3N 1 JRNL REVDAT 1 16-MAR-22 7Q3N 0 JRNL AUTH A.STSIAPANAVA,C.XU,S.NISHIO,L.HAN,N.YAMAKAWA,M.CARRONI, JRNL AUTH 2 K.TUNYASUVUNAKOOL,J.JUMPER,D.DE SANCTIS,B.WU,L.JOVINE JRNL TITL STRUCTURE OF THE DECOY MODULE OF HUMAN GLYCOPROTEIN 2 AND JRNL TITL 2 UROMODULIN AND ITS INTERACTION WITH BACTERIAL ADHESIN FIMH. JRNL REF NAT.STRUCT.MOL.BIOL. V. 29 190 2022 JRNL REFN ESSN 1545-9985 JRNL PMID 35273390 JRNL DOI 10.1038/S41594-022-00729-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.TAMM,F.L.HORSFALL REMARK 1 TITL CHARACTERIZATION AND SEPARATION OF AN INHIBITOR OF VIRAL REMARK 1 TITL 2 HEMAGGLUTINATION PRESENT IN URINE. REMARK 1 REF PROC SOC EXP BIOL MED V. 74 106 1950 REMARK 1 REFN ISSN 0037-9727 REMARK 1 PMID 15430405 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.PENNICA,W.J.KOHR,W.J.KUANG,D.GLAISTER,B.B.AGGARWAL, REMARK 1 AUTH 2 E.Y.CHEN,D.V.GOEDDEL REMARK 1 TITL IDENTIFICATION OF HUMAN UROMODULIN AS THE TAMM-HORSFALL REMARK 1 TITL 2 URINARY GLYCOPROTEIN. REMARK 1 REF SCIENCE V. 236 83 1987 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 3453112 REMARK 1 DOI 10.1126/SCIENCE.3453112 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.PAK,Y.PU,Z.T.ZHANG,D.L.HASTY,X.R.WU REMARK 1 TITL TAMM-HORSFALL PROTEIN BINDS TO TYPE 1 FIMBRIATED ESCHERICHIA REMARK 1 TITL 2 COLI AND PREVENTS E. COLI FROM BINDING TO UROPLAKIN IA AND REMARK 1 TITL 3 IB RECEPTORS. REMARK 1 REF J BIOL CHEM V. 276 9924 2001 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 11134021 REMARK 1 DOI 10.1074/JBC.M008610200 REMARK 1 REFERENCE 4 REMARK 1 AUTH F.SERAFINI-CESSI,N.MALAGOLINI,D.CAVALLONE REMARK 1 TITL TAMM-HORSFALL GLYCOPROTEIN: BIOLOGY AND CLINICAL RELEVANCE. REMARK 1 REF AM J KIDNEY DIS V. 42 658 2003 REMARK 1 REFN ISSN 1523-6838 REMARK 1 PMID 14520616 REMARK 1 DOI 10.1016/S0272-6386(03)00829-1 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.YANG,C.WU,S.ZHAO,J.GUO REMARK 1 TITL IDENTIFICATION AND CHARACTERIZATION OF D8C, A NOVEL DOMAIN REMARK 1 TITL 2 PRESENT IN LIVER-SPECIFIC LZP, UROMODULIN AND GLYCOPROTEIN REMARK 1 TITL 3 2, MUTATED IN FAMILIAL JUVENILE HYPERURICAEMIC NEPHROPATHY. REMARK 1 REF FEBS LETT V. 578 236 2004 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 15589826 REMARK 1 DOI 10.1016/J.FEBSLET.2004.10.092 REMARK 1 REFERENCE 6 REMARK 1 AUTH V.KALAS,J.S.PINKNER,T.J.HANNAN,M.E.HIBBING,K.W.DODSON, REMARK 1 AUTH 2 A.S.HOLEHOUSE,H.ZHANG,N.H.TOLIA,M.L.GROSS,R.V.PAPPU, REMARK 1 AUTH 3 J.JANETKA,S.J.HULTGREN REMARK 1 TITL EVOLUTIONARY FINE-TUNING OF CONFORMATIONAL ENSEMBLES IN FIMH REMARK 1 TITL 2 DURING HOST-PATHOGEN INTERACTIONS. REMARK 1 REF SCI ADV V. 3 01944 2017 REMARK 1 REFN ESSN 2375-2548 REMARK 1 PMID 28246638 REMARK 1 DOI 10.1126/SCIADV.1601944 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.M.SAUER,R.P.JAKOB,T.LUBER,F.CANONICA,G.NAVARRA,B.ERNST, REMARK 1 AUTH 2 C.UNVERZAGT,T.MAIER,R.GLOCKSHUBER REMARK 1 TITL BINDING OF THE BACTERIAL ADHESIN FIMH TO ITS NATURAL, REMARK 1 TITL 2 MULTIVALENT HIGH-MANNOSE TYPE GLYCAN TARGETS. REMARK 1 REF J AM CHEM SOC V. 141 936 2019 REMARK 1 REFN ESSN 1520-5126 REMARK 1 PMID 30543411 REMARK 1 DOI 10.1021/JACS.8B10736 REMARK 1 REFERENCE 8 REMARK 1 AUTH G.L.WEISS,J.J.STANISICH,M.M.SAUER,C.W.LIN,J.ERAS,D.S.ZYLA, REMARK 1 AUTH 2 J.TRUCK,O.DEVUYST,M.AEBI,M.PILHOFER,R.GLOCKSHUBER REMARK 1 TITL ARCHITECTURE AND FUNCTION OF HUMAN UROMODULIN FILAMENTS IN REMARK 1 TITL 2 URINARY TRACT INFECTIONS. REMARK 1 REF SCIENCE V. 369 1005 2020 REMARK 1 REFN ESSN 1095-9203 REMARK 1 PMID 32616672 REMARK 1 DOI 10.1126/SCIENCE.AAZ9866 REMARK 1 REFERENCE 9 REMARK 1 AUTH A.STSIAPANAVA,C.XU,M.BRUNATI,S.ZAMORA-CABALLERO,C.SCHAEFFER, REMARK 1 AUTH 2 M.BOKHOVE,L.HAN,H.HEBERT,M.CARRONI,S.YASUMASU,L.RAMPOLDI, REMARK 1 AUTH 3 B.WU,L.JOVINE REMARK 1 TITL CRYO-EM STRUCTURE OF NATIVE HUMAN UROMODULIN, A ZONA REMARK 1 TITL 2 PELLUCIDA MODULE POLYMER. REMARK 1 REF EMBO J V. 39 06807 2020 REMARK 1 REFN ESSN 1460-2075 REMARK 1 PMID 33196145 REMARK 1 DOI 10.15252/EMBJ.2020106807 REMARK 1 REFERENCE 10 REMARK 1 AUTH J.JUMPER,R.EVANS,A.PRITZEL,T.GREEN,M.FIGURNOV,O.RONNEBERGER, REMARK 1 AUTH 2 K.TUNYASUVUNAKOOL,R.BATES,A.ZIDEK,A.POTAPENKO,A.BRIDGLAND, REMARK 1 AUTH 3 C.MEYER,S.A.A.KOHL,A.J.BALLARD,A.COWIE,B.ROMERA-PAREDES, REMARK 1 AUTH 4 S.NIKOLOV,R.JAIN,J.ADLER,T.BACK,S.PETERSEN,D.REIMAN, REMARK 1 AUTH 5 E.CLANCY,M.ZIELINSKI,M.STEINEGGER,M.PACHOLSKA,T.BERGHAMMER, REMARK 1 AUTH 6 S.BODENSTEIN,D.SILVER,O.VINYALS,A.W.SENIOR,K.KAVUKCUOGLU, REMARK 1 AUTH 7 P.KOHLI,D.HASSABIS REMARK 1 TITL HIGHLY ACCURATE PROTEIN STRUCTURE PREDICTION WITH ALPHAFOLD. REMARK 1 REF NATURE V. 596 583 2021 REMARK 1 REFN ESSN 1476-4687 REMARK 1 PMID 34265844 REMARK 1 DOI 10.1073/PNAS.2021785118 REMARK 2 REMARK 2 RESOLUTION. 7.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, RELION, UCSF CHIMERA, REMARK 3 COOT, RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 7PFP REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 396.230 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.400 REMARK 3 NUMBER OF PARTICLES : 225819 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7Q3N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292118919. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF HUMAN UROMODULIN REMARK 245 (UMOD)/TAMM-HORSFALL PROTEIN REMARK 245 (THP) AND THE LECTIN DOMAIN OF REMARK 245 THE FIMH ADHESIN OF REMARK 245 UROPATHOGENIC E. COLI; REMARK 245 UROMODULIN; TYPE 1 FIMBIRAL REMARK 245 ADHESIN FIMH REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.80 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 13616 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: U, F, A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS U 317 REMARK 465 LYS U 318 REMARK 465 GLN U 319 REMARK 465 ASP U 320 REMARK 465 PHE U 321 REMARK 465 ASN U 322 REMARK 465 ILE U 323 REMARK 465 THR U 324 REMARK 465 ASP U 325 REMARK 465 ILE U 326 REMARK 465 SER U 327 REMARK 465 LEU U 328 REMARK 465 LEU U 329 REMARK 465 GLU U 330 REMARK 465 HIS U 331 REMARK 465 ARG U 332 REMARK 465 LEU U 333 REMARK 465 GLU U 334 REMARK 465 CYS U 335 REMARK 465 GLY U 336 REMARK 465 ALA U 337 REMARK 465 ASN U 338 REMARK 465 ASP U 339 REMARK 465 MET U 340 REMARK 465 LYS U 341 REMARK 465 VAL U 342 REMARK 465 SER U 343 REMARK 465 LEU U 344 REMARK 465 GLY U 345 REMARK 465 LYS U 346 REMARK 465 CYS U 347 REMARK 465 GLN U 348 REMARK 465 LEU U 349 REMARK 465 LYS U 350 REMARK 465 SER U 351 REMARK 465 LEU U 352 REMARK 465 GLY U 353 REMARK 465 PHE U 354 REMARK 465 ASP U 355 REMARK 465 LYS U 356 REMARK 465 VAL U 357 REMARK 465 PHE U 358 REMARK 465 MET U 359 REMARK 465 TYR U 360 REMARK 465 LEU U 361 REMARK 465 SER U 362 REMARK 465 ASP U 363 REMARK 465 SER U 364 REMARK 465 ARG U 365 REMARK 465 CYS U 366 REMARK 465 SER U 367 REMARK 465 GLY U 368 REMARK 465 PHE U 369 REMARK 465 ASN U 370 REMARK 465 ASP U 371 REMARK 465 ARG U 372 REMARK 465 ASP U 373 REMARK 465 ASN U 374 REMARK 465 ARG U 375 REMARK 465 ASP U 376 REMARK 465 TRP U 377 REMARK 465 VAL U 378 REMARK 465 SER U 379 REMARK 465 VAL U 380 REMARK 465 VAL U 381 REMARK 465 THR U 382 REMARK 465 PRO U 383 REMARK 465 ALA U 384 REMARK 465 ARG U 385 REMARK 465 ASP U 386 REMARK 465 GLY U 387 REMARK 465 PRO U 388 REMARK 465 CYS U 389 REMARK 465 GLY U 390 REMARK 465 THR U 391 REMARK 465 VAL U 392 REMARK 465 LEU U 393 REMARK 465 THR U 394 REMARK 465 ARG U 395 REMARK 465 ASN U 396 REMARK 465 GLU U 397 REMARK 465 THR U 398 REMARK 465 HIS U 399 REMARK 465 ALA U 400 REMARK 465 THR U 401 REMARK 465 TYR U 402 REMARK 465 SER U 403 REMARK 465 ASN U 404 REMARK 465 THR U 405 REMARK 465 LEU U 406 REMARK 465 TYR U 407 REMARK 465 LEU U 408 REMARK 465 ALA U 409 REMARK 465 ASP U 410 REMARK 465 GLU U 411 REMARK 465 ILE U 412 REMARK 465 ILE U 413 REMARK 465 ILE U 414 REMARK 465 ARG U 415 REMARK 465 ASP U 416 REMARK 465 LEU U 417 REMARK 465 ASN U 418 REMARK 465 ILE U 419 REMARK 465 LYS U 420 REMARK 465 ILE U 421 REMARK 465 ASN U 422 REMARK 465 PHE U 423 REMARK 465 ALA U 424 REMARK 465 CYS U 425 REMARK 465 SER U 426 REMARK 465 TYR U 427 REMARK 465 PRO U 428 REMARK 465 LEU U 429 REMARK 465 ASP U 430 REMARK 465 MET U 431 REMARK 465 LYS U 432 REMARK 465 VAL U 433 REMARK 465 SER U 434 REMARK 465 LEU U 435 REMARK 465 LYS U 436 REMARK 465 THR U 437 REMARK 465 ALA U 438 REMARK 465 LEU U 439 REMARK 465 GLN U 440 REMARK 465 PRO U 441 REMARK 465 MET U 442 REMARK 465 VAL U 443 REMARK 465 SER U 444 REMARK 465 ALA U 445 REMARK 465 LEU U 446 REMARK 465 ASN U 447 REMARK 465 ILE U 448 REMARK 465 ARG U 449 REMARK 465 VAL U 450 REMARK 465 GLY U 451 REMARK 465 GLY U 452 REMARK 465 THR U 453 REMARK 465 GLY U 454 REMARK 465 MET U 455 REMARK 465 PHE U 456 REMARK 465 THR U 457 REMARK 465 VAL U 458 REMARK 465 ARG U 459 REMARK 465 MET U 460 REMARK 465 ALA U 461 REMARK 465 LEU U 462 REMARK 465 PHE U 463 REMARK 465 GLN U 464 REMARK 465 THR U 465 REMARK 465 PRO U 466 REMARK 465 SER U 467 REMARK 465 TYR U 468 REMARK 465 THR U 469 REMARK 465 GLN U 470 REMARK 465 PRO U 471 REMARK 465 TYR U 472 REMARK 465 GLN U 473 REMARK 465 GLY U 474 REMARK 465 SER U 475 REMARK 465 SER U 476 REMARK 465 VAL U 477 REMARK 465 THR U 478 REMARK 465 LEU U 479 REMARK 465 SER U 480 REMARK 465 THR U 481 REMARK 465 GLU U 482 REMARK 465 ALA U 483 REMARK 465 PHE U 484 REMARK 465 LEU U 485 REMARK 465 TYR U 486 REMARK 465 VAL U 487 REMARK 465 GLY U 488 REMARK 465 THR U 489 REMARK 465 MET U 490 REMARK 465 LEU U 491 REMARK 465 ASP U 492 REMARK 465 GLY U 493 REMARK 465 GLY U 494 REMARK 465 ASP U 495 REMARK 465 LEU U 496 REMARK 465 SER U 497 REMARK 465 ARG U 498 REMARK 465 PHE U 499 REMARK 465 ALA U 500 REMARK 465 LEU U 501 REMARK 465 LEU U 502 REMARK 465 MET U 503 REMARK 465 THR U 504 REMARK 465 ASN U 505 REMARK 465 CYS U 506 REMARK 465 TYR U 507 REMARK 465 ALA U 508 REMARK 465 THR U 509 REMARK 465 PRO U 510 REMARK 465 SER U 511 REMARK 465 SER U 512 REMARK 465 ASN U 513 REMARK 465 ALA U 514 REMARK 465 THR U 515 REMARK 465 ASP U 516 REMARK 465 PRO U 517 REMARK 465 LEU U 518 REMARK 465 LYS U 519 REMARK 465 TYR U 520 REMARK 465 PHE U 521 REMARK 465 ILE U 522 REMARK 465 ILE U 523 REMARK 465 GLN U 524 REMARK 465 ASP U 525 REMARK 465 ARG U 526 REMARK 465 CYS U 527 REMARK 465 PRO U 528 REMARK 465 HIS U 529 REMARK 465 THR U 530 REMARK 465 ARG U 531 REMARK 465 ASP U 532 REMARK 465 SER U 533 REMARK 465 THR U 534 REMARK 465 ILE U 535 REMARK 465 GLN U 536 REMARK 465 VAL U 537 REMARK 465 VAL U 538 REMARK 465 GLU U 539 REMARK 465 ASN U 540 REMARK 465 GLY U 541 REMARK 465 GLU U 542 REMARK 465 SER U 543 REMARK 465 SER U 544 REMARK 465 GLN U 545 REMARK 465 GLY U 546 REMARK 465 ARG U 547 REMARK 465 PHE U 548 REMARK 465 SER U 549 REMARK 465 VAL U 550 REMARK 465 GLN U 551 REMARK 465 MET U 552 REMARK 465 PHE U 553 REMARK 465 ARG U 554 REMARK 465 PHE U 555 REMARK 465 ALA U 556 REMARK 465 GLY U 557 REMARK 465 ASN U 558 REMARK 465 TYR U 559 REMARK 465 ASP U 560 REMARK 465 LEU U 561 REMARK 465 VAL U 562 REMARK 465 TYR U 563 REMARK 465 LEU U 564 REMARK 465 HIS U 565 REMARK 465 CYS U 566 REMARK 465 GLU U 567 REMARK 465 VAL U 568 REMARK 465 TYR U 569 REMARK 465 LEU U 570 REMARK 465 CYS U 571 REMARK 465 ASP U 572 REMARK 465 THR U 573 REMARK 465 MET U 574 REMARK 465 ASN U 575 REMARK 465 GLU U 576 REMARK 465 LYS U 577 REMARK 465 CYS U 578 REMARK 465 LYS U 579 REMARK 465 PRO U 580 REMARK 465 THR U 581 REMARK 465 CYS U 582 REMARK 465 SER U 583 REMARK 465 GLY U 584 REMARK 465 THR U 585 REMARK 465 ARG U 586 REMARK 465 PHE U 587 REMARK 465 SER F 160 REMARK 465 HIS F 161 REMARK 465 HIS F 162 REMARK 465 TRP F 163 REMARK 465 GLY F 164 REMARK 465 HIS F 165 REMARK 465 HIS F 166 REMARK 465 HIS F 167 REMARK 465 HIS F 168 REMARK 465 HIS F 169 REMARK 465 HIS F 170 REMARK 465 HIS F 171 REMARK 465 HIS F 172 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA U 74 -166.08 58.90 REMARK 500 ASN U 224 18.36 49.07 REMARK 500 SER U 252 -154.94 55.05 REMARK 500 THR F 51 -70.43 -129.12 REMARK 500 ASN F 138 -163.42 -161.78 REMARK 500 SER F 139 54.97 -92.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-13378 RELATED DB: EMDB REMARK 900 FULL-LENGTH CRYO-EM STRUCTURE OF THE NATIVE HUMAN UROMODULIN (UMOD)/ REMARK 900 TAMM-HORSFALL PROTEIN (THP) FILAMENT REMARK 900 RELATED ID: 7PFP RELATED DB: PDB REMARK 900 FULL-LENGTH CRYO-EM STRUCTURE OF THE NATIVE HUMAN UROMODULIN (UMOD)/ REMARK 900 TAMM-HORSFALL PROTEIN (THP) FILAMENT REMARK 900 RELATED ID: EMD-10553 RELATED DB: EMDB REMARK 900 CRYO-EM OF NATIVE HUMAN UROMODULIN (UMOD)/TAMM-HORSFALL PROTEIN REMARK 900 (THP) FILAMENT REMARK 900 RELATED ID: 6TQK RELATED DB: PDB REMARK 900 CRYO-EM OF NATIVE HUMAN UROMODULIN (UMOD)/TAMM-HORSFALL PROTEIN REMARK 900 (THP) FILAMENT REMARK 900 RELATED ID: 6GTW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FIMH LECTIN DOMAIN FROM E.COLI F18 IN REMARK 900 COMPLEX WITH TRIMANNOSE REMARK 900 RELATED ID: EMD-13794 RELATED DB: EMDB REMARK 900 CRYO-EM OF THE COMPLEX BETWEEN HUMAN UROMODULIN (UMOD)/TAMM- REMARK 900 HORSFALL PROTEIN (THP) AND THE FIMH LECTIN DOMAIN FROM REMARK 900 UROPATHOGENIC E. COLI DBREF 7Q3N U 25 587 UNP P07911 UROM_HUMAN 25 587 DBREF 7Q3N F 1 159 UNP Q1R2J4 Q1R2J4_ECOUT 22 180 SEQADV 7Q3N VAL F 27 UNP Q1R2J4 ALA 48 ENGINEERED MUTATION SEQADV 7Q3N SER F 160 UNP Q1R2J4 EXPRESSION TAG SEQADV 7Q3N HIS F 161 UNP Q1R2J4 EXPRESSION TAG SEQADV 7Q3N HIS F 162 UNP Q1R2J4 EXPRESSION TAG SEQADV 7Q3N TRP F 163 UNP Q1R2J4 EXPRESSION TAG SEQADV 7Q3N GLY F 164 UNP Q1R2J4 EXPRESSION TAG SEQADV 7Q3N HIS F 165 UNP Q1R2J4 EXPRESSION TAG SEQADV 7Q3N HIS F 166 UNP Q1R2J4 EXPRESSION TAG SEQADV 7Q3N HIS F 167 UNP Q1R2J4 EXPRESSION TAG SEQADV 7Q3N HIS F 168 UNP Q1R2J4 EXPRESSION TAG SEQADV 7Q3N HIS F 169 UNP Q1R2J4 EXPRESSION TAG SEQADV 7Q3N HIS F 170 UNP Q1R2J4 EXPRESSION TAG SEQADV 7Q3N HIS F 171 UNP Q1R2J4 EXPRESSION TAG SEQADV 7Q3N HIS F 172 UNP Q1R2J4 EXPRESSION TAG SEQRES 1 U 563 ASP THR SER GLU ALA ARG TRP CYS SER GLU CYS HIS SER SEQRES 2 U 563 ASN ALA THR CYS THR GLU ASP GLU ALA VAL THR THR CYS SEQRES 3 U 563 THR CYS GLN GLU GLY PHE THR GLY ASP GLY LEU THR CYS SEQRES 4 U 563 VAL ASP LEU ASP GLU CYS ALA ILE PRO GLY ALA HIS ASN SEQRES 5 U 563 CYS SER ALA ASN SER SER CYS VAL ASN THR PRO GLY SER SEQRES 6 U 563 PHE SER CYS VAL CYS PRO GLU GLY PHE ARG LEU SER PRO SEQRES 7 U 563 GLY LEU GLY CYS THR ASP VAL ASP GLU CYS ALA GLU PRO SEQRES 8 U 563 GLY LEU SER HIS CYS HIS ALA LEU ALA THR CYS VAL ASN SEQRES 9 U 563 VAL VAL GLY SER TYR LEU CYS VAL CYS PRO ALA GLY TYR SEQRES 10 U 563 ARG GLY ASP GLY TRP HIS CYS GLU CYS SER PRO GLY SER SEQRES 11 U 563 CYS GLY PRO GLY LEU ASP CYS VAL PRO GLU GLY ASP ALA SEQRES 12 U 563 LEU VAL CYS ALA ASP PRO CYS GLN ALA HIS ARG THR LEU SEQRES 13 U 563 ASP GLU TYR TRP ARG SER THR GLU TYR GLY GLU GLY TYR SEQRES 14 U 563 ALA CYS ASP THR ASP LEU ARG GLY TRP TYR ARG PHE VAL SEQRES 15 U 563 GLY GLN GLY GLY ALA ARG MET ALA GLU THR CYS VAL PRO SEQRES 16 U 563 VAL LEU ARG CYS ASN THR ALA ALA PRO MET TRP LEU ASN SEQRES 17 U 563 GLY THR HIS PRO SER SER ASP GLU GLY ILE VAL SER ARG SEQRES 18 U 563 LYS ALA CYS ALA HIS TRP SER GLY HIS CYS CYS LEU TRP SEQRES 19 U 563 ASP ALA SER VAL GLN VAL LYS ALA CYS ALA GLY GLY TYR SEQRES 20 U 563 TYR VAL TYR ASN LEU THR ALA PRO PRO GLU CYS HIS LEU SEQRES 21 U 563 ALA TYR CYS THR ASP PRO SER SER VAL GLU GLY THR CYS SEQRES 22 U 563 GLU GLU CYS SER ILE ASP GLU ASP CYS LYS SER ASN ASN SEQRES 23 U 563 GLY ARG TRP HIS CYS GLN CYS LYS GLN ASP PHE ASN ILE SEQRES 24 U 563 THR ASP ILE SER LEU LEU GLU HIS ARG LEU GLU CYS GLY SEQRES 25 U 563 ALA ASN ASP MET LYS VAL SER LEU GLY LYS CYS GLN LEU SEQRES 26 U 563 LYS SER LEU GLY PHE ASP LYS VAL PHE MET TYR LEU SER SEQRES 27 U 563 ASP SER ARG CYS SER GLY PHE ASN ASP ARG ASP ASN ARG SEQRES 28 U 563 ASP TRP VAL SER VAL VAL THR PRO ALA ARG ASP GLY PRO SEQRES 29 U 563 CYS GLY THR VAL LEU THR ARG ASN GLU THR HIS ALA THR SEQRES 30 U 563 TYR SER ASN THR LEU TYR LEU ALA ASP GLU ILE ILE ILE SEQRES 31 U 563 ARG ASP LEU ASN ILE LYS ILE ASN PHE ALA CYS SER TYR SEQRES 32 U 563 PRO LEU ASP MET LYS VAL SER LEU LYS THR ALA LEU GLN SEQRES 33 U 563 PRO MET VAL SER ALA LEU ASN ILE ARG VAL GLY GLY THR SEQRES 34 U 563 GLY MET PHE THR VAL ARG MET ALA LEU PHE GLN THR PRO SEQRES 35 U 563 SER TYR THR GLN PRO TYR GLN GLY SER SER VAL THR LEU SEQRES 36 U 563 SER THR GLU ALA PHE LEU TYR VAL GLY THR MET LEU ASP SEQRES 37 U 563 GLY GLY ASP LEU SER ARG PHE ALA LEU LEU MET THR ASN SEQRES 38 U 563 CYS TYR ALA THR PRO SER SER ASN ALA THR ASP PRO LEU SEQRES 39 U 563 LYS TYR PHE ILE ILE GLN ASP ARG CYS PRO HIS THR ARG SEQRES 40 U 563 ASP SER THR ILE GLN VAL VAL GLU ASN GLY GLU SER SER SEQRES 41 U 563 GLN GLY ARG PHE SER VAL GLN MET PHE ARG PHE ALA GLY SEQRES 42 U 563 ASN TYR ASP LEU VAL TYR LEU HIS CYS GLU VAL TYR LEU SEQRES 43 U 563 CYS ASP THR MET ASN GLU LYS CYS LYS PRO THR CYS SER SEQRES 44 U 563 GLY THR ARG PHE SEQRES 1 F 172 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 F 172 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 F 172 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 F 172 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 F 172 THR ASP TYR VAL THR LEU GLN ARG GLY ALA ALA TYR GLY SEQRES 6 F 172 GLY VAL LEU SER SER PHE SER GLY THR VAL LYS TYR ASN SEQRES 7 F 172 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 F 172 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 F 172 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 F 172 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 F 172 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 F 172 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 F 172 PRO THR GLY SER HIS HIS TRP GLY HIS HIS HIS HIS HIS SEQRES 14 F 172 HIS HIS HIS HET NAG A 1 14 HET NAG A 2 14 HET FUC A 3 10 HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET GAL C 6 11 HET MAN C 7 11 HET NAG C 8 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET MAN D 6 11 HET MAN D 7 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 3 NAG 10(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 5 BMA 2(C6 H12 O6) FORMUL 5 MAN 6(C6 H12 O6) FORMUL 5 GAL C6 H12 O6 HELIX 1 AA1 TRP U 31 CYS U 35 5 5 HELIX 2 AA2 ASP U 67 ILE U 71 5 5 HELIX 3 AA3 ASP U 110 GLU U 114 5 5 HELIX 4 AA4 ASP U 172 HIS U 177 1 6 HELIX 5 AA5 GLU U 182 SER U 186 5 5 HELIX 6 AA6 VAL U 206 GLY U 210 5 5 HELIX 7 AA7 GLY F 65 SER F 70 1 6 SHEET 1 AA1 3 GLU U 28 ALA U 29 0 SHEET 2 AA1 3 VAL U 47 THR U 51 -1 O THR U 48 N ALA U 29 SHEET 3 AA1 3 THR U 40 ASP U 44 -1 N ASP U 44 O VAL U 47 SHEET 1 AA2 2 PHE U 56 GLY U 58 0 SHEET 2 AA2 2 CYS U 63 ASP U 65 -1 O VAL U 64 N THR U 57 SHEET 1 AA3 2 SER U 82 THR U 86 0 SHEET 2 AA3 2 SER U 89 VAL U 93 -1 O SER U 91 N VAL U 84 SHEET 1 AA4 2 PHE U 98 SER U 101 0 SHEET 2 AA4 2 GLY U 105 ASP U 108 -1 O THR U 107 N ARG U 99 SHEET 1 AA5 2 THR U 125 VAL U 129 0 SHEET 2 AA5 2 SER U 132 VAL U 136 -1 O VAL U 136 N THR U 125 SHEET 1 AA6 2 ASP U 160 GLU U 164 0 SHEET 2 AA6 2 ALA U 167 ALA U 171 -1 O VAL U 169 N VAL U 162 SHEET 1 AA7 6 GLY U 201 TYR U 203 0 SHEET 2 AA7 6 TYR U 271 LEU U 276 -1 O TYR U 274 N TYR U 203 SHEET 3 AA7 6 HIS U 254 CYS U 267 -1 N CYS U 267 O TYR U 271 SHEET 4 AA7 6 VAL U 243 TRP U 251 -1 N ARG U 245 O VAL U 262 SHEET 5 AA7 6 ALA U 227 ASN U 232 -1 N TRP U 230 O CYS U 248 SHEET 6 AA7 6 LEU U 284 TYR U 286 1 O ALA U 285 N MET U 229 SHEET 1 AA8 2 ARG U 212 MET U 213 0 SHEET 2 AA8 2 THR U 288 ASP U 289 -1 O ASP U 289 N ARG U 212 SHEET 1 AA9 2 CYS U 306 ASN U 309 0 SHEET 2 AA9 2 ARG U 312 CYS U 315 -1 O HIS U 314 N LYS U 307 SHEET 1 AB1 4 ALA F 10 ILE F 11 0 SHEET 2 AB1 4 ALA F 2 THR F 5 -1 N CYS F 3 O ILE F 11 SHEET 3 AB1 4 ILE F 42 HIS F 45 -1 O PHE F 43 N LYS F 4 SHEET 4 AB1 4 LYS F 101 PRO F 102 -1 O LYS F 101 N CYS F 44 SHEET 1 AB2 5 GLY F 16 VAL F 22 0 SHEET 2 AB2 5 PHE F 142 ALA F 150 1 O VAL F 145 N ALA F 18 SHEET 3 AB2 5 LEU F 125 ASN F 135 -1 N ILE F 126 O ILE F 148 SHEET 4 AB2 5 ASP F 54 ALA F 63 -1 N TYR F 55 O THR F 134 SHEET 5 AB2 5 VAL F 93 TYR F 95 -1 O VAL F 93 N VAL F 56 SHEET 1 AB3 4 LEU F 34 ASP F 37 0 SHEET 2 AB3 4 VAL F 105 PRO F 111 -1 O LEU F 109 N LEU F 34 SHEET 3 AB3 4 PHE F 71 TYR F 77 -1 N SER F 72 O THR F 110 SHEET 4 AB3 4 SER F 80 PHE F 84 -1 O SER F 80 N TYR F 77 SHEET 1 AB4 2 GLY F 117 ILE F 120 0 SHEET 2 AB4 2 VAL F 154 VAL F 156 -1 O VAL F 156 N GLY F 117 SSBOND 1 CYS U 32 CYS U 41 1555 1555 2.03 SSBOND 2 CYS U 35 CYS U 50 1555 1555 2.03 SSBOND 3 CYS U 52 CYS U 63 1555 1555 2.04 SSBOND 4 CYS U 69 CYS U 83 1555 1555 2.03 SSBOND 5 CYS U 77 CYS U 92 1555 1555 2.03 SSBOND 6 CYS U 94 CYS U 106 1555 1555 2.03 SSBOND 7 CYS U 112 CYS U 126 1555 1555 2.03 SSBOND 8 CYS U 120 CYS U 135 1555 1555 2.02 SSBOND 9 CYS U 137 CYS U 148 1555 1555 2.03 SSBOND 10 CYS U 150 CYS U 161 1555 1555 2.04 SSBOND 11 CYS U 155 CYS U 170 1555 1555 2.03 SSBOND 12 CYS U 174 CYS U 267 1555 1555 2.03 SSBOND 13 CYS U 195 CYS U 282 1555 1555 2.03 SSBOND 14 CYS U 217 CYS U 255 1555 1555 2.03 SSBOND 15 CYS U 223 CYS U 287 1555 1555 2.03 SSBOND 16 CYS U 248 CYS U 256 1555 1555 2.03 SSBOND 17 CYS U 297 CYS U 306 1555 1555 2.03 SSBOND 18 CYS U 300 CYS U 315 1555 1555 2.03 SSBOND 19 CYS F 3 CYS F 44 1555 1555 2.03 LINK ND2 ASN U 76 C1 NAG A 1 1555 1555 1.44 LINK ND2 ASN U 80 C1 NAG B 1 1555 1555 1.47 LINK ND2 ASN U 232 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN U 275 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.46 LINK O6 NAG A 1 C1 FUC A 3 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 7 1555 1555 1.45 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.46 LINK O4 NAG C 5 C1 GAL C 6 1555 1555 1.45 LINK O2 MAN C 7 C1 NAG C 8 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 7 1555 1555 1.45 LINK O3 MAN D 4 C1 MAN D 5 1555 1555 1.44 LINK O6 MAN D 4 C1 MAN D 6 1555 1555 1.45 CISPEP 1 PHE F 84 PRO F 85 0 1.86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000