data_7Q3U # _entry.id 7Q3U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7Q3U pdb_00007q3u 10.2210/pdb7q3u/pdb WWPDB D_1292118470 ? ? EMDB EMD-13795 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of TDP43 core peptide amyloid fiber' _pdbx_database_related.db_id EMD-13795 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7Q3U _pdbx_database_status.recvd_initial_deposition_date 2021-10-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Nazarov, S.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Neurosci. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-6256 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 26 _citation.language ? _citation.page_first 983 _citation.page_last 996 _citation.title 'Seeding the aggregation of TDP-43 requires post-fibrillization proteolytic cleavage.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41593-023-01341-4 _citation.pdbx_database_id_PubMed 37248338 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumar, S.T.' 1 0000-0002-4322-3963 primary 'Nazarov, S.' 2 ? primary 'Porta, S.' 3 ? primary 'Maharjan, N.' 4 ? primary 'Cendrowska, U.' 5 ? primary 'Kabani, M.' 6 ? primary 'Finamore, F.' 7 ? primary 'Xu, Y.' 8 ? primary 'Lee, V.M.' 9 0000-0003-3536-6902 primary 'Lashuel, H.A.' 10 0000-0001-7682-8320 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7Q3U _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'TAR DNA-binding protein 43' _entity.formula_weight 8042.687 _entity.pdbx_number_of_molecules 5 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name TDP-43 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGN MQ ; _entity_poly.pdbx_seq_one_letter_code_can ;NPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGN MQ ; _entity_poly.pdbx_strand_id A,B,C,D,E _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 PRO n 1 3 GLY n 1 4 GLY n 1 5 PHE n 1 6 GLY n 1 7 ASN n 1 8 GLN n 1 9 GLY n 1 10 GLY n 1 11 PHE n 1 12 GLY n 1 13 ASN n 1 14 SER n 1 15 ARG n 1 16 GLY n 1 17 GLY n 1 18 GLY n 1 19 ALA n 1 20 GLY n 1 21 LEU n 1 22 GLY n 1 23 ASN n 1 24 ASN n 1 25 GLN n 1 26 GLY n 1 27 SER n 1 28 ASN n 1 29 MET n 1 30 GLY n 1 31 GLY n 1 32 GLY n 1 33 MET n 1 34 ASN n 1 35 PHE n 1 36 GLY n 1 37 ALA n 1 38 PHE n 1 39 SER n 1 40 ILE n 1 41 ASN n 1 42 PRO n 1 43 ALA n 1 44 MET n 1 45 MET n 1 46 ALA n 1 47 ALA n 1 48 ALA n 1 49 GLN n 1 50 ALA n 1 51 ALA n 1 52 LEU n 1 53 GLN n 1 54 SER n 1 55 SER n 1 56 TRP n 1 57 GLY n 1 58 MET n 1 59 MET n 1 60 GLY n 1 61 MET n 1 62 LEU n 1 63 ALA n 1 64 SER n 1 65 GLN n 1 66 GLN n 1 67 ASN n 1 68 GLN n 1 69 SER n 1 70 GLY n 1 71 PRO n 1 72 SER n 1 73 GLY n 1 74 ASN n 1 75 ASN n 1 76 GLN n 1 77 ASN n 1 78 GLN n 1 79 GLY n 1 80 ASN n 1 81 MET n 1 82 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 82 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TARDBP, TDP43' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TADBP_HUMAN _struct_ref.pdbx_db_accession Q13148 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGN MQ ; _struct_ref.pdbx_align_begin 279 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7Q3U A 1 ? 82 ? Q13148 279 ? 360 ? 279 360 2 1 7Q3U B 1 ? 82 ? Q13148 279 ? 360 ? 279 360 3 1 7Q3U C 1 ? 82 ? Q13148 279 ? 360 ? 279 360 4 1 7Q3U D 1 ? 82 ? Q13148 279 ? 360 ? 279 360 5 1 7Q3U E 1 ? 82 ? Q13148 279 ? 360 ? 279 360 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7Q3U _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7Q3U _struct.title 'Cryo-EM structure of TDP43 core peptide amyloid fiber' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7Q3U _struct_keywords.text 'TDP-43, Amyloid, Neurodegeneration, Helical, Cryo-EM, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET C 33 ? ASN C 34 ? MET C 311 ASN C 312 AA1 2 MET A 33 ? ASN A 34 ? MET A 311 ASN A 312 AA1 3 GLY B 32 ? ASN B 34 ? GLY B 310 ASN B 312 AA1 4 GLY D 32 ? ASN D 34 ? GLY D 310 ASN D 312 AA1 5 GLY E 32 ? ASN E 34 ? GLY E 310 ASN E 312 AA2 1 SER C 39 ? ILE C 40 ? SER C 317 ILE C 318 AA2 2 SER A 39 ? ILE A 40 ? SER A 317 ILE A 318 AA2 3 SER B 39 ? ILE B 40 ? SER B 317 ILE B 318 AA2 4 SER D 39 ? ILE D 40 ? SER D 317 ILE D 318 AA2 5 SER E 39 ? ILE E 40 ? SER E 317 ILE E 318 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O MET C 33 ? O MET C 311 N ASN A 34 ? N ASN A 312 AA1 2 3 N MET A 33 ? N MET A 311 O GLY B 32 ? O GLY B 310 AA1 3 4 N MET B 33 ? N MET B 311 O GLY D 32 ? O GLY D 310 AA1 4 5 N MET D 33 ? N MET D 311 O GLY E 32 ? O GLY E 310 AA2 1 2 O SER C 39 ? O SER C 317 N ILE A 40 ? N ILE A 318 AA2 2 3 N SER A 39 ? N SER A 317 O ILE B 40 ? O ILE B 318 AA2 3 4 N SER B 39 ? N SER B 317 O ILE D 40 ? O ILE D 318 AA2 4 5 N SER D 39 ? N SER D 317 O ILE E 40 ? O ILE E 318 # _atom_sites.entry_id 7Q3U _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 279 ? ? ? A . n A 1 2 PRO 2 280 ? ? ? A . n A 1 3 GLY 3 281 281 GLY GLY A . n A 1 4 GLY 4 282 282 GLY GLY A . n A 1 5 PHE 5 283 283 PHE PHE A . n A 1 6 GLY 6 284 284 GLY GLY A . n A 1 7 ASN 7 285 285 ASN ASN A . n A 1 8 GLN 8 286 286 GLN GLN A . n A 1 9 GLY 9 287 287 GLY GLY A . n A 1 10 GLY 10 288 288 GLY GLY A . n A 1 11 PHE 11 289 289 PHE PHE A . n A 1 12 GLY 12 290 290 GLY GLY A . n A 1 13 ASN 13 291 291 ASN ASN A . n A 1 14 SER 14 292 292 SER SER A . n A 1 15 ARG 15 293 293 ARG ARG A . n A 1 16 GLY 16 294 294 GLY GLY A . n A 1 17 GLY 17 295 295 GLY GLY A . n A 1 18 GLY 18 296 296 GLY GLY A . n A 1 19 ALA 19 297 297 ALA ALA A . n A 1 20 GLY 20 298 298 GLY GLY A . n A 1 21 LEU 21 299 299 LEU LEU A . n A 1 22 GLY 22 300 300 GLY GLY A . n A 1 23 ASN 23 301 301 ASN ASN A . n A 1 24 ASN 24 302 302 ASN ASN A . n A 1 25 GLN 25 303 303 GLN GLN A . n A 1 26 GLY 26 304 304 GLY GLY A . n A 1 27 SER 27 305 305 SER SER A . n A 1 28 ASN 28 306 306 ASN ASN A . n A 1 29 MET 29 307 307 MET MET A . n A 1 30 GLY 30 308 308 GLY GLY A . n A 1 31 GLY 31 309 309 GLY GLY A . n A 1 32 GLY 32 310 310 GLY GLY A . n A 1 33 MET 33 311 311 MET MET A . n A 1 34 ASN 34 312 312 ASN ASN A . n A 1 35 PHE 35 313 313 PHE PHE A . n A 1 36 GLY 36 314 314 GLY GLY A . n A 1 37 ALA 37 315 315 ALA ALA A . n A 1 38 PHE 38 316 316 PHE PHE A . n A 1 39 SER 39 317 317 SER SER A . n A 1 40 ILE 40 318 318 ILE ILE A . n A 1 41 ASN 41 319 319 ASN ASN A . n A 1 42 PRO 42 320 320 PRO PRO A . n A 1 43 ALA 43 321 321 ALA ALA A . n A 1 44 MET 44 322 322 MET MET A . n A 1 45 MET 45 323 323 MET MET A . n A 1 46 ALA 46 324 324 ALA ALA A . n A 1 47 ALA 47 325 325 ALA ALA A . n A 1 48 ALA 48 326 326 ALA ALA A . n A 1 49 GLN 49 327 327 GLN GLN A . n A 1 50 ALA 50 328 328 ALA ALA A . n A 1 51 ALA 51 329 329 ALA ALA A . n A 1 52 LEU 52 330 330 LEU LEU A . n A 1 53 GLN 53 331 331 GLN GLN A . n A 1 54 SER 54 332 332 SER SER A . n A 1 55 SER 55 333 333 SER SER A . n A 1 56 TRP 56 334 334 TRP TRP A . n A 1 57 GLY 57 335 335 GLY GLY A . n A 1 58 MET 58 336 336 MET MET A . n A 1 59 MET 59 337 337 MET MET A . n A 1 60 GLY 60 338 338 GLY GLY A . n A 1 61 MET 61 339 339 MET MET A . n A 1 62 LEU 62 340 340 LEU LEU A . n A 1 63 ALA 63 341 341 ALA ALA A . n A 1 64 SER 64 342 342 SER SER A . n A 1 65 GLN 65 343 343 GLN GLN A . n A 1 66 GLN 66 344 344 GLN GLN A . n A 1 67 ASN 67 345 345 ASN ASN A . n A 1 68 GLN 68 346 346 GLN GLN A . n A 1 69 SER 69 347 347 SER SER A . n A 1 70 GLY 70 348 348 GLY GLY A . n A 1 71 PRO 71 349 349 PRO PRO A . n A 1 72 SER 72 350 350 SER SER A . n A 1 73 GLY 73 351 351 GLY GLY A . n A 1 74 ASN 74 352 ? ? ? A . n A 1 75 ASN 75 353 ? ? ? A . n A 1 76 GLN 76 354 ? ? ? A . n A 1 77 ASN 77 355 ? ? ? A . n A 1 78 GLN 78 356 ? ? ? A . n A 1 79 GLY 79 357 ? ? ? A . n A 1 80 ASN 80 358 ? ? ? A . n A 1 81 MET 81 359 ? ? ? A . n A 1 82 GLN 82 360 ? ? ? A . n B 1 1 ASN 1 279 ? ? ? B . n B 1 2 PRO 2 280 ? ? ? B . n B 1 3 GLY 3 281 281 GLY GLY B . n B 1 4 GLY 4 282 282 GLY GLY B . n B 1 5 PHE 5 283 283 PHE PHE B . n B 1 6 GLY 6 284 284 GLY GLY B . n B 1 7 ASN 7 285 285 ASN ASN B . n B 1 8 GLN 8 286 286 GLN GLN B . n B 1 9 GLY 9 287 287 GLY GLY B . n B 1 10 GLY 10 288 288 GLY GLY B . n B 1 11 PHE 11 289 289 PHE PHE B . n B 1 12 GLY 12 290 290 GLY GLY B . n B 1 13 ASN 13 291 291 ASN ASN B . n B 1 14 SER 14 292 292 SER SER B . n B 1 15 ARG 15 293 293 ARG ARG B . n B 1 16 GLY 16 294 294 GLY GLY B . n B 1 17 GLY 17 295 295 GLY GLY B . n B 1 18 GLY 18 296 296 GLY GLY B . n B 1 19 ALA 19 297 297 ALA ALA B . n B 1 20 GLY 20 298 298 GLY GLY B . n B 1 21 LEU 21 299 299 LEU LEU B . n B 1 22 GLY 22 300 300 GLY GLY B . n B 1 23 ASN 23 301 301 ASN ASN B . n B 1 24 ASN 24 302 302 ASN ASN B . n B 1 25 GLN 25 303 303 GLN GLN B . n B 1 26 GLY 26 304 304 GLY GLY B . n B 1 27 SER 27 305 305 SER SER B . n B 1 28 ASN 28 306 306 ASN ASN B . n B 1 29 MET 29 307 307 MET MET B . n B 1 30 GLY 30 308 308 GLY GLY B . n B 1 31 GLY 31 309 309 GLY GLY B . n B 1 32 GLY 32 310 310 GLY GLY B . n B 1 33 MET 33 311 311 MET MET B . n B 1 34 ASN 34 312 312 ASN ASN B . n B 1 35 PHE 35 313 313 PHE PHE B . n B 1 36 GLY 36 314 314 GLY GLY B . n B 1 37 ALA 37 315 315 ALA ALA B . n B 1 38 PHE 38 316 316 PHE PHE B . n B 1 39 SER 39 317 317 SER SER B . n B 1 40 ILE 40 318 318 ILE ILE B . n B 1 41 ASN 41 319 319 ASN ASN B . n B 1 42 PRO 42 320 320 PRO PRO B . n B 1 43 ALA 43 321 321 ALA ALA B . n B 1 44 MET 44 322 322 MET MET B . n B 1 45 MET 45 323 323 MET MET B . n B 1 46 ALA 46 324 324 ALA ALA B . n B 1 47 ALA 47 325 325 ALA ALA B . n B 1 48 ALA 48 326 326 ALA ALA B . n B 1 49 GLN 49 327 327 GLN GLN B . n B 1 50 ALA 50 328 328 ALA ALA B . n B 1 51 ALA 51 329 329 ALA ALA B . n B 1 52 LEU 52 330 330 LEU LEU B . n B 1 53 GLN 53 331 331 GLN GLN B . n B 1 54 SER 54 332 332 SER SER B . n B 1 55 SER 55 333 333 SER SER B . n B 1 56 TRP 56 334 334 TRP TRP B . n B 1 57 GLY 57 335 335 GLY GLY B . n B 1 58 MET 58 336 336 MET MET B . n B 1 59 MET 59 337 337 MET MET B . n B 1 60 GLY 60 338 338 GLY GLY B . n B 1 61 MET 61 339 339 MET MET B . n B 1 62 LEU 62 340 340 LEU LEU B . n B 1 63 ALA 63 341 341 ALA ALA B . n B 1 64 SER 64 342 342 SER SER B . n B 1 65 GLN 65 343 343 GLN GLN B . n B 1 66 GLN 66 344 344 GLN GLN B . n B 1 67 ASN 67 345 345 ASN ASN B . n B 1 68 GLN 68 346 346 GLN GLN B . n B 1 69 SER 69 347 347 SER SER B . n B 1 70 GLY 70 348 348 GLY GLY B . n B 1 71 PRO 71 349 349 PRO PRO B . n B 1 72 SER 72 350 350 SER SER B . n B 1 73 GLY 73 351 351 GLY GLY B . n B 1 74 ASN 74 352 ? ? ? B . n B 1 75 ASN 75 353 ? ? ? B . n B 1 76 GLN 76 354 ? ? ? B . n B 1 77 ASN 77 355 ? ? ? B . n B 1 78 GLN 78 356 ? ? ? B . n B 1 79 GLY 79 357 ? ? ? B . n B 1 80 ASN 80 358 ? ? ? B . n B 1 81 MET 81 359 ? ? ? B . n B 1 82 GLN 82 360 ? ? ? B . n C 1 1 ASN 1 279 ? ? ? C . n C 1 2 PRO 2 280 ? ? ? C . n C 1 3 GLY 3 281 281 GLY GLY C . n C 1 4 GLY 4 282 282 GLY GLY C . n C 1 5 PHE 5 283 283 PHE PHE C . n C 1 6 GLY 6 284 284 GLY GLY C . n C 1 7 ASN 7 285 285 ASN ASN C . n C 1 8 GLN 8 286 286 GLN GLN C . n C 1 9 GLY 9 287 287 GLY GLY C . n C 1 10 GLY 10 288 288 GLY GLY C . n C 1 11 PHE 11 289 289 PHE PHE C . n C 1 12 GLY 12 290 290 GLY GLY C . n C 1 13 ASN 13 291 291 ASN ASN C . n C 1 14 SER 14 292 292 SER SER C . n C 1 15 ARG 15 293 293 ARG ARG C . n C 1 16 GLY 16 294 294 GLY GLY C . n C 1 17 GLY 17 295 295 GLY GLY C . n C 1 18 GLY 18 296 296 GLY GLY C . n C 1 19 ALA 19 297 297 ALA ALA C . n C 1 20 GLY 20 298 298 GLY GLY C . n C 1 21 LEU 21 299 299 LEU LEU C . n C 1 22 GLY 22 300 300 GLY GLY C . n C 1 23 ASN 23 301 301 ASN ASN C . n C 1 24 ASN 24 302 302 ASN ASN C . n C 1 25 GLN 25 303 303 GLN GLN C . n C 1 26 GLY 26 304 304 GLY GLY C . n C 1 27 SER 27 305 305 SER SER C . n C 1 28 ASN 28 306 306 ASN ASN C . n C 1 29 MET 29 307 307 MET MET C . n C 1 30 GLY 30 308 308 GLY GLY C . n C 1 31 GLY 31 309 309 GLY GLY C . n C 1 32 GLY 32 310 310 GLY GLY C . n C 1 33 MET 33 311 311 MET MET C . n C 1 34 ASN 34 312 312 ASN ASN C . n C 1 35 PHE 35 313 313 PHE PHE C . n C 1 36 GLY 36 314 314 GLY GLY C . n C 1 37 ALA 37 315 315 ALA ALA C . n C 1 38 PHE 38 316 316 PHE PHE C . n C 1 39 SER 39 317 317 SER SER C . n C 1 40 ILE 40 318 318 ILE ILE C . n C 1 41 ASN 41 319 319 ASN ASN C . n C 1 42 PRO 42 320 320 PRO PRO C . n C 1 43 ALA 43 321 321 ALA ALA C . n C 1 44 MET 44 322 322 MET MET C . n C 1 45 MET 45 323 323 MET MET C . n C 1 46 ALA 46 324 324 ALA ALA C . n C 1 47 ALA 47 325 325 ALA ALA C . n C 1 48 ALA 48 326 326 ALA ALA C . n C 1 49 GLN 49 327 327 GLN GLN C . n C 1 50 ALA 50 328 328 ALA ALA C . n C 1 51 ALA 51 329 329 ALA ALA C . n C 1 52 LEU 52 330 330 LEU LEU C . n C 1 53 GLN 53 331 331 GLN GLN C . n C 1 54 SER 54 332 332 SER SER C . n C 1 55 SER 55 333 333 SER SER C . n C 1 56 TRP 56 334 334 TRP TRP C . n C 1 57 GLY 57 335 335 GLY GLY C . n C 1 58 MET 58 336 336 MET MET C . n C 1 59 MET 59 337 337 MET MET C . n C 1 60 GLY 60 338 338 GLY GLY C . n C 1 61 MET 61 339 339 MET MET C . n C 1 62 LEU 62 340 340 LEU LEU C . n C 1 63 ALA 63 341 341 ALA ALA C . n C 1 64 SER 64 342 342 SER SER C . n C 1 65 GLN 65 343 343 GLN GLN C . n C 1 66 GLN 66 344 344 GLN GLN C . n C 1 67 ASN 67 345 345 ASN ASN C . n C 1 68 GLN 68 346 346 GLN GLN C . n C 1 69 SER 69 347 347 SER SER C . n C 1 70 GLY 70 348 348 GLY GLY C . n C 1 71 PRO 71 349 349 PRO PRO C . n C 1 72 SER 72 350 350 SER SER C . n C 1 73 GLY 73 351 351 GLY GLY C . n C 1 74 ASN 74 352 ? ? ? C . n C 1 75 ASN 75 353 ? ? ? C . n C 1 76 GLN 76 354 ? ? ? C . n C 1 77 ASN 77 355 ? ? ? C . n C 1 78 GLN 78 356 ? ? ? C . n C 1 79 GLY 79 357 ? ? ? C . n C 1 80 ASN 80 358 ? ? ? C . n C 1 81 MET 81 359 ? ? ? C . n C 1 82 GLN 82 360 ? ? ? C . n D 1 1 ASN 1 279 ? ? ? D . n D 1 2 PRO 2 280 ? ? ? D . n D 1 3 GLY 3 281 281 GLY GLY D . n D 1 4 GLY 4 282 282 GLY GLY D . n D 1 5 PHE 5 283 283 PHE PHE D . n D 1 6 GLY 6 284 284 GLY GLY D . n D 1 7 ASN 7 285 285 ASN ASN D . n D 1 8 GLN 8 286 286 GLN GLN D . n D 1 9 GLY 9 287 287 GLY GLY D . n D 1 10 GLY 10 288 288 GLY GLY D . n D 1 11 PHE 11 289 289 PHE PHE D . n D 1 12 GLY 12 290 290 GLY GLY D . n D 1 13 ASN 13 291 291 ASN ASN D . n D 1 14 SER 14 292 292 SER SER D . n D 1 15 ARG 15 293 293 ARG ARG D . n D 1 16 GLY 16 294 294 GLY GLY D . n D 1 17 GLY 17 295 295 GLY GLY D . n D 1 18 GLY 18 296 296 GLY GLY D . n D 1 19 ALA 19 297 297 ALA ALA D . n D 1 20 GLY 20 298 298 GLY GLY D . n D 1 21 LEU 21 299 299 LEU LEU D . n D 1 22 GLY 22 300 300 GLY GLY D . n D 1 23 ASN 23 301 301 ASN ASN D . n D 1 24 ASN 24 302 302 ASN ASN D . n D 1 25 GLN 25 303 303 GLN GLN D . n D 1 26 GLY 26 304 304 GLY GLY D . n D 1 27 SER 27 305 305 SER SER D . n D 1 28 ASN 28 306 306 ASN ASN D . n D 1 29 MET 29 307 307 MET MET D . n D 1 30 GLY 30 308 308 GLY GLY D . n D 1 31 GLY 31 309 309 GLY GLY D . n D 1 32 GLY 32 310 310 GLY GLY D . n D 1 33 MET 33 311 311 MET MET D . n D 1 34 ASN 34 312 312 ASN ASN D . n D 1 35 PHE 35 313 313 PHE PHE D . n D 1 36 GLY 36 314 314 GLY GLY D . n D 1 37 ALA 37 315 315 ALA ALA D . n D 1 38 PHE 38 316 316 PHE PHE D . n D 1 39 SER 39 317 317 SER SER D . n D 1 40 ILE 40 318 318 ILE ILE D . n D 1 41 ASN 41 319 319 ASN ASN D . n D 1 42 PRO 42 320 320 PRO PRO D . n D 1 43 ALA 43 321 321 ALA ALA D . n D 1 44 MET 44 322 322 MET MET D . n D 1 45 MET 45 323 323 MET MET D . n D 1 46 ALA 46 324 324 ALA ALA D . n D 1 47 ALA 47 325 325 ALA ALA D . n D 1 48 ALA 48 326 326 ALA ALA D . n D 1 49 GLN 49 327 327 GLN GLN D . n D 1 50 ALA 50 328 328 ALA ALA D . n D 1 51 ALA 51 329 329 ALA ALA D . n D 1 52 LEU 52 330 330 LEU LEU D . n D 1 53 GLN 53 331 331 GLN GLN D . n D 1 54 SER 54 332 332 SER SER D . n D 1 55 SER 55 333 333 SER SER D . n D 1 56 TRP 56 334 334 TRP TRP D . n D 1 57 GLY 57 335 335 GLY GLY D . n D 1 58 MET 58 336 336 MET MET D . n D 1 59 MET 59 337 337 MET MET D . n D 1 60 GLY 60 338 338 GLY GLY D . n D 1 61 MET 61 339 339 MET MET D . n D 1 62 LEU 62 340 340 LEU LEU D . n D 1 63 ALA 63 341 341 ALA ALA D . n D 1 64 SER 64 342 342 SER SER D . n D 1 65 GLN 65 343 343 GLN GLN D . n D 1 66 GLN 66 344 344 GLN GLN D . n D 1 67 ASN 67 345 345 ASN ASN D . n D 1 68 GLN 68 346 346 GLN GLN D . n D 1 69 SER 69 347 347 SER SER D . n D 1 70 GLY 70 348 348 GLY GLY D . n D 1 71 PRO 71 349 349 PRO PRO D . n D 1 72 SER 72 350 350 SER SER D . n D 1 73 GLY 73 351 351 GLY GLY D . n D 1 74 ASN 74 352 ? ? ? D . n D 1 75 ASN 75 353 ? ? ? D . n D 1 76 GLN 76 354 ? ? ? D . n D 1 77 ASN 77 355 ? ? ? D . n D 1 78 GLN 78 356 ? ? ? D . n D 1 79 GLY 79 357 ? ? ? D . n D 1 80 ASN 80 358 ? ? ? D . n D 1 81 MET 81 359 ? ? ? D . n D 1 82 GLN 82 360 ? ? ? D . n E 1 1 ASN 1 279 ? ? ? E . n E 1 2 PRO 2 280 ? ? ? E . n E 1 3 GLY 3 281 281 GLY GLY E . n E 1 4 GLY 4 282 282 GLY GLY E . n E 1 5 PHE 5 283 283 PHE PHE E . n E 1 6 GLY 6 284 284 GLY GLY E . n E 1 7 ASN 7 285 285 ASN ASN E . n E 1 8 GLN 8 286 286 GLN GLN E . n E 1 9 GLY 9 287 287 GLY GLY E . n E 1 10 GLY 10 288 288 GLY GLY E . n E 1 11 PHE 11 289 289 PHE PHE E . n E 1 12 GLY 12 290 290 GLY GLY E . n E 1 13 ASN 13 291 291 ASN ASN E . n E 1 14 SER 14 292 292 SER SER E . n E 1 15 ARG 15 293 293 ARG ARG E . n E 1 16 GLY 16 294 294 GLY GLY E . n E 1 17 GLY 17 295 295 GLY GLY E . n E 1 18 GLY 18 296 296 GLY GLY E . n E 1 19 ALA 19 297 297 ALA ALA E . n E 1 20 GLY 20 298 298 GLY GLY E . n E 1 21 LEU 21 299 299 LEU LEU E . n E 1 22 GLY 22 300 300 GLY GLY E . n E 1 23 ASN 23 301 301 ASN ASN E . n E 1 24 ASN 24 302 302 ASN ASN E . n E 1 25 GLN 25 303 303 GLN GLN E . n E 1 26 GLY 26 304 304 GLY GLY E . n E 1 27 SER 27 305 305 SER SER E . n E 1 28 ASN 28 306 306 ASN ASN E . n E 1 29 MET 29 307 307 MET MET E . n E 1 30 GLY 30 308 308 GLY GLY E . n E 1 31 GLY 31 309 309 GLY GLY E . n E 1 32 GLY 32 310 310 GLY GLY E . n E 1 33 MET 33 311 311 MET MET E . n E 1 34 ASN 34 312 312 ASN ASN E . n E 1 35 PHE 35 313 313 PHE PHE E . n E 1 36 GLY 36 314 314 GLY GLY E . n E 1 37 ALA 37 315 315 ALA ALA E . n E 1 38 PHE 38 316 316 PHE PHE E . n E 1 39 SER 39 317 317 SER SER E . n E 1 40 ILE 40 318 318 ILE ILE E . n E 1 41 ASN 41 319 319 ASN ASN E . n E 1 42 PRO 42 320 320 PRO PRO E . n E 1 43 ALA 43 321 321 ALA ALA E . n E 1 44 MET 44 322 322 MET MET E . n E 1 45 MET 45 323 323 MET MET E . n E 1 46 ALA 46 324 324 ALA ALA E . n E 1 47 ALA 47 325 325 ALA ALA E . n E 1 48 ALA 48 326 326 ALA ALA E . n E 1 49 GLN 49 327 327 GLN GLN E . n E 1 50 ALA 50 328 328 ALA ALA E . n E 1 51 ALA 51 329 329 ALA ALA E . n E 1 52 LEU 52 330 330 LEU LEU E . n E 1 53 GLN 53 331 331 GLN GLN E . n E 1 54 SER 54 332 332 SER SER E . n E 1 55 SER 55 333 333 SER SER E . n E 1 56 TRP 56 334 334 TRP TRP E . n E 1 57 GLY 57 335 335 GLY GLY E . n E 1 58 MET 58 336 336 MET MET E . n E 1 59 MET 59 337 337 MET MET E . n E 1 60 GLY 60 338 338 GLY GLY E . n E 1 61 MET 61 339 339 MET MET E . n E 1 62 LEU 62 340 340 LEU LEU E . n E 1 63 ALA 63 341 341 ALA ALA E . n E 1 64 SER 64 342 342 SER SER E . n E 1 65 GLN 65 343 343 GLN GLN E . n E 1 66 GLN 66 344 344 GLN GLN E . n E 1 67 ASN 67 345 345 ASN ASN E . n E 1 68 GLN 68 346 346 GLN GLN E . n E 1 69 SER 69 347 347 SER SER E . n E 1 70 GLY 70 348 348 GLY GLY E . n E 1 71 PRO 71 349 349 PRO PRO E . n E 1 72 SER 72 350 350 SER SER E . n E 1 73 GLY 73 351 351 GLY GLY E . n E 1 74 ASN 74 352 ? ? ? E . n E 1 75 ASN 75 353 ? ? ? E . n E 1 76 GLN 76 354 ? ? ? E . n E 1 77 ASN 77 355 ? ? ? E . n E 1 78 GLN 78 356 ? ? ? E . n E 1 79 GLY 79 357 ? ? ? E . n E 1 80 ASN 80 358 ? ? ? E . n E 1 81 MET 81 359 ? ? ? E . n E 1 82 GLN 82 360 ? ? ? E . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email hilal.lashuel@epfl.ch _pdbx_contact_author.name_first Hilal _pdbx_contact_author.name_last Lashuel _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7682-8320 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 21040 ? 1 MORE -70 ? 1 'SSA (A^2)' 11230 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-03-22 2 'Structure model' 1 1 2023-04-12 3 'Structure model' 1 2 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' em_entity_assembly 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' citation 5 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_em_entity_assembly.name' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 3 'Structure model' '_citation.pdbx_database_id_DOI' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 3 'Structure model' '_citation.year' # _em_3d_fitting.entry_id 7Q3U _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 103 _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7Q3U _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 5795 _em_3d_reconstruction.resolution 3.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Helical filament from TDP43 core peptide' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7Q3U _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 50.0 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 2000 _em_imaging.nominal_defocus_min 900 _em_imaging.nominal_magnification 81000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.citation_id ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 90 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7Q3U _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7Q3U _em_experiment.id 1 _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NE2 A GLN 331 ? ? OG D SER 347 ? ? 2.12 2 1 OG B SER 347 ? ? NE2 C GLN 331 ? ? 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 291 ? ? 57.44 -129.02 2 1 ALA A 326 ? ? 58.92 -137.79 3 1 GLN A 344 ? ? -162.32 114.73 4 1 ASN B 291 ? ? 57.41 -129.06 5 1 ALA B 326 ? ? 58.91 -137.75 6 1 GLN B 344 ? ? -162.43 114.66 7 1 ASN C 291 ? ? 57.37 -128.99 8 1 ALA C 326 ? ? 58.96 -137.74 9 1 GLN C 344 ? ? -162.34 114.70 10 1 ASN D 291 ? ? 57.42 -128.97 11 1 ALA D 326 ? ? 58.93 -137.76 12 1 GLN D 344 ? ? -162.41 114.70 13 1 ASN E 291 ? ? 57.39 -129.01 14 1 ALA E 326 ? ? 58.86 -137.77 15 1 GLN E 344 ? ? -162.37 114.74 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 279 ? A ASN 1 2 1 Y 1 A PRO 280 ? A PRO 2 3 1 Y 1 A ASN 352 ? A ASN 74 4 1 Y 1 A ASN 353 ? A ASN 75 5 1 Y 1 A GLN 354 ? A GLN 76 6 1 Y 1 A ASN 355 ? A ASN 77 7 1 Y 1 A GLN 356 ? A GLN 78 8 1 Y 1 A GLY 357 ? A GLY 79 9 1 Y 1 A ASN 358 ? A ASN 80 10 1 Y 1 A MET 359 ? A MET 81 11 1 Y 1 A GLN 360 ? A GLN 82 12 1 Y 1 B ASN 279 ? B ASN 1 13 1 Y 1 B PRO 280 ? B PRO 2 14 1 Y 1 B ASN 352 ? B ASN 74 15 1 Y 1 B ASN 353 ? B ASN 75 16 1 Y 1 B GLN 354 ? B GLN 76 17 1 Y 1 B ASN 355 ? B ASN 77 18 1 Y 1 B GLN 356 ? B GLN 78 19 1 Y 1 B GLY 357 ? B GLY 79 20 1 Y 1 B ASN 358 ? B ASN 80 21 1 Y 1 B MET 359 ? B MET 81 22 1 Y 1 B GLN 360 ? B GLN 82 23 1 Y 1 C ASN 279 ? C ASN 1 24 1 Y 1 C PRO 280 ? C PRO 2 25 1 Y 1 C ASN 352 ? C ASN 74 26 1 Y 1 C ASN 353 ? C ASN 75 27 1 Y 1 C GLN 354 ? C GLN 76 28 1 Y 1 C ASN 355 ? C ASN 77 29 1 Y 1 C GLN 356 ? C GLN 78 30 1 Y 1 C GLY 357 ? C GLY 79 31 1 Y 1 C ASN 358 ? C ASN 80 32 1 Y 1 C MET 359 ? C MET 81 33 1 Y 1 C GLN 360 ? C GLN 82 34 1 Y 1 D ASN 279 ? D ASN 1 35 1 Y 1 D PRO 280 ? D PRO 2 36 1 Y 1 D ASN 352 ? D ASN 74 37 1 Y 1 D ASN 353 ? D ASN 75 38 1 Y 1 D GLN 354 ? D GLN 76 39 1 Y 1 D ASN 355 ? D ASN 77 40 1 Y 1 D GLN 356 ? D GLN 78 41 1 Y 1 D GLY 357 ? D GLY 79 42 1 Y 1 D ASN 358 ? D ASN 80 43 1 Y 1 D MET 359 ? D MET 81 44 1 Y 1 D GLN 360 ? D GLN 82 45 1 Y 1 E ASN 279 ? E ASN 1 46 1 Y 1 E PRO 280 ? E PRO 2 47 1 Y 1 E ASN 352 ? E ASN 74 48 1 Y 1 E ASN 353 ? E ASN 75 49 1 Y 1 E GLN 354 ? E GLN 76 50 1 Y 1 E ASN 355 ? E ASN 77 51 1 Y 1 E GLN 356 ? E GLN 78 52 1 Y 1 E GLY 357 ? E GLY 79 53 1 Y 1 E ASN 358 ? E ASN 80 54 1 Y 1 E MET 359 ? E MET 81 55 1 Y 1 E GLN 360 ? E GLN 82 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 GLN N N N N 58 GLN CA C N S 59 GLN C C N N 60 GLN O O N N 61 GLN CB C N N 62 GLN CG C N N 63 GLN CD C N N 64 GLN OE1 O N N 65 GLN NE2 N N N 66 GLN OXT O N N 67 GLN H H N N 68 GLN H2 H N N 69 GLN HA H N N 70 GLN HB2 H N N 71 GLN HB3 H N N 72 GLN HG2 H N N 73 GLN HG3 H N N 74 GLN HE21 H N N 75 GLN HE22 H N N 76 GLN HXT H N N 77 GLY N N N N 78 GLY CA C N N 79 GLY C C N N 80 GLY O O N N 81 GLY OXT O N N 82 GLY H H N N 83 GLY H2 H N N 84 GLY HA2 H N N 85 GLY HA3 H N N 86 GLY HXT H N N 87 ILE N N N N 88 ILE CA C N S 89 ILE C C N N 90 ILE O O N N 91 ILE CB C N S 92 ILE CG1 C N N 93 ILE CG2 C N N 94 ILE CD1 C N N 95 ILE OXT O N N 96 ILE H H N N 97 ILE H2 H N N 98 ILE HA H N N 99 ILE HB H N N 100 ILE HG12 H N N 101 ILE HG13 H N N 102 ILE HG21 H N N 103 ILE HG22 H N N 104 ILE HG23 H N N 105 ILE HD11 H N N 106 ILE HD12 H N N 107 ILE HD13 H N N 108 ILE HXT H N N 109 LEU N N N N 110 LEU CA C N S 111 LEU C C N N 112 LEU O O N N 113 LEU CB C N N 114 LEU CG C N N 115 LEU CD1 C N N 116 LEU CD2 C N N 117 LEU OXT O N N 118 LEU H H N N 119 LEU H2 H N N 120 LEU HA H N N 121 LEU HB2 H N N 122 LEU HB3 H N N 123 LEU HG H N N 124 LEU HD11 H N N 125 LEU HD12 H N N 126 LEU HD13 H N N 127 LEU HD21 H N N 128 LEU HD22 H N N 129 LEU HD23 H N N 130 LEU HXT H N N 131 MET N N N N 132 MET CA C N S 133 MET C C N N 134 MET O O N N 135 MET CB C N N 136 MET CG C N N 137 MET SD S N N 138 MET CE C N N 139 MET OXT O N N 140 MET H H N N 141 MET H2 H N N 142 MET HA H N N 143 MET HB2 H N N 144 MET HB3 H N N 145 MET HG2 H N N 146 MET HG3 H N N 147 MET HE1 H N N 148 MET HE2 H N N 149 MET HE3 H N N 150 MET HXT H N N 151 PHE N N N N 152 PHE CA C N S 153 PHE C C N N 154 PHE O O N N 155 PHE CB C N N 156 PHE CG C Y N 157 PHE CD1 C Y N 158 PHE CD2 C Y N 159 PHE CE1 C Y N 160 PHE CE2 C Y N 161 PHE CZ C Y N 162 PHE OXT O N N 163 PHE H H N N 164 PHE H2 H N N 165 PHE HA H N N 166 PHE HB2 H N N 167 PHE HB3 H N N 168 PHE HD1 H N N 169 PHE HD2 H N N 170 PHE HE1 H N N 171 PHE HE2 H N N 172 PHE HZ H N N 173 PHE HXT H N N 174 PRO N N N N 175 PRO CA C N S 176 PRO C C N N 177 PRO O O N N 178 PRO CB C N N 179 PRO CG C N N 180 PRO CD C N N 181 PRO OXT O N N 182 PRO H H N N 183 PRO HA H N N 184 PRO HB2 H N N 185 PRO HB3 H N N 186 PRO HG2 H N N 187 PRO HG3 H N N 188 PRO HD2 H N N 189 PRO HD3 H N N 190 PRO HXT H N N 191 SER N N N N 192 SER CA C N S 193 SER C C N N 194 SER O O N N 195 SER CB C N N 196 SER OG O N N 197 SER OXT O N N 198 SER H H N N 199 SER H2 H N N 200 SER HA H N N 201 SER HB2 H N N 202 SER HB3 H N N 203 SER HG H N N 204 SER HXT H N N 205 TRP N N N N 206 TRP CA C N S 207 TRP C C N N 208 TRP O O N N 209 TRP CB C N N 210 TRP CG C Y N 211 TRP CD1 C Y N 212 TRP CD2 C Y N 213 TRP NE1 N Y N 214 TRP CE2 C Y N 215 TRP CE3 C Y N 216 TRP CZ2 C Y N 217 TRP CZ3 C Y N 218 TRP CH2 C Y N 219 TRP OXT O N N 220 TRP H H N N 221 TRP H2 H N N 222 TRP HA H N N 223 TRP HB2 H N N 224 TRP HB3 H N N 225 TRP HD1 H N N 226 TRP HE1 H N N 227 TRP HE3 H N N 228 TRP HZ2 H N N 229 TRP HZ3 H N N 230 TRP HH2 H N N 231 TRP HXT H N N 232 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 GLN N CA sing N N 55 GLN N H sing N N 56 GLN N H2 sing N N 57 GLN CA C sing N N 58 GLN CA CB sing N N 59 GLN CA HA sing N N 60 GLN C O doub N N 61 GLN C OXT sing N N 62 GLN CB CG sing N N 63 GLN CB HB2 sing N N 64 GLN CB HB3 sing N N 65 GLN CG CD sing N N 66 GLN CG HG2 sing N N 67 GLN CG HG3 sing N N 68 GLN CD OE1 doub N N 69 GLN CD NE2 sing N N 70 GLN NE2 HE21 sing N N 71 GLN NE2 HE22 sing N N 72 GLN OXT HXT sing N N 73 GLY N CA sing N N 74 GLY N H sing N N 75 GLY N H2 sing N N 76 GLY CA C sing N N 77 GLY CA HA2 sing N N 78 GLY CA HA3 sing N N 79 GLY C O doub N N 80 GLY C OXT sing N N 81 GLY OXT HXT sing N N 82 ILE N CA sing N N 83 ILE N H sing N N 84 ILE N H2 sing N N 85 ILE CA C sing N N 86 ILE CA CB sing N N 87 ILE CA HA sing N N 88 ILE C O doub N N 89 ILE C OXT sing N N 90 ILE CB CG1 sing N N 91 ILE CB CG2 sing N N 92 ILE CB HB sing N N 93 ILE CG1 CD1 sing N N 94 ILE CG1 HG12 sing N N 95 ILE CG1 HG13 sing N N 96 ILE CG2 HG21 sing N N 97 ILE CG2 HG22 sing N N 98 ILE CG2 HG23 sing N N 99 ILE CD1 HD11 sing N N 100 ILE CD1 HD12 sing N N 101 ILE CD1 HD13 sing N N 102 ILE OXT HXT sing N N 103 LEU N CA sing N N 104 LEU N H sing N N 105 LEU N H2 sing N N 106 LEU CA C sing N N 107 LEU CA CB sing N N 108 LEU CA HA sing N N 109 LEU C O doub N N 110 LEU C OXT sing N N 111 LEU CB CG sing N N 112 LEU CB HB2 sing N N 113 LEU CB HB3 sing N N 114 LEU CG CD1 sing N N 115 LEU CG CD2 sing N N 116 LEU CG HG sing N N 117 LEU CD1 HD11 sing N N 118 LEU CD1 HD12 sing N N 119 LEU CD1 HD13 sing N N 120 LEU CD2 HD21 sing N N 121 LEU CD2 HD22 sing N N 122 LEU CD2 HD23 sing N N 123 LEU OXT HXT sing N N 124 MET N CA sing N N 125 MET N H sing N N 126 MET N H2 sing N N 127 MET CA C sing N N 128 MET CA CB sing N N 129 MET CA HA sing N N 130 MET C O doub N N 131 MET C OXT sing N N 132 MET CB CG sing N N 133 MET CB HB2 sing N N 134 MET CB HB3 sing N N 135 MET CG SD sing N N 136 MET CG HG2 sing N N 137 MET CG HG3 sing N N 138 MET SD CE sing N N 139 MET CE HE1 sing N N 140 MET CE HE2 sing N N 141 MET CE HE3 sing N N 142 MET OXT HXT sing N N 143 PHE N CA sing N N 144 PHE N H sing N N 145 PHE N H2 sing N N 146 PHE CA C sing N N 147 PHE CA CB sing N N 148 PHE CA HA sing N N 149 PHE C O doub N N 150 PHE C OXT sing N N 151 PHE CB CG sing N N 152 PHE CB HB2 sing N N 153 PHE CB HB3 sing N N 154 PHE CG CD1 doub Y N 155 PHE CG CD2 sing Y N 156 PHE CD1 CE1 sing Y N 157 PHE CD1 HD1 sing N N 158 PHE CD2 CE2 doub Y N 159 PHE CD2 HD2 sing N N 160 PHE CE1 CZ doub Y N 161 PHE CE1 HE1 sing N N 162 PHE CE2 CZ sing Y N 163 PHE CE2 HE2 sing N N 164 PHE CZ HZ sing N N 165 PHE OXT HXT sing N N 166 PRO N CA sing N N 167 PRO N CD sing N N 168 PRO N H sing N N 169 PRO CA C sing N N 170 PRO CA CB sing N N 171 PRO CA HA sing N N 172 PRO C O doub N N 173 PRO C OXT sing N N 174 PRO CB CG sing N N 175 PRO CB HB2 sing N N 176 PRO CB HB3 sing N N 177 PRO CG CD sing N N 178 PRO CG HG2 sing N N 179 PRO CG HG3 sing N N 180 PRO CD HD2 sing N N 181 PRO CD HD3 sing N N 182 PRO OXT HXT sing N N 183 SER N CA sing N N 184 SER N H sing N N 185 SER N H2 sing N N 186 SER CA C sing N N 187 SER CA CB sing N N 188 SER CA HA sing N N 189 SER C O doub N N 190 SER C OXT sing N N 191 SER CB OG sing N N 192 SER CB HB2 sing N N 193 SER CB HB3 sing N N 194 SER OG HG sing N N 195 SER OXT HXT sing N N 196 TRP N CA sing N N 197 TRP N H sing N N 198 TRP N H2 sing N N 199 TRP CA C sing N N 200 TRP CA CB sing N N 201 TRP CA HA sing N N 202 TRP C O doub N N 203 TRP C OXT sing N N 204 TRP CB CG sing N N 205 TRP CB HB2 sing N N 206 TRP CB HB3 sing N N 207 TRP CG CD1 doub Y N 208 TRP CG CD2 sing Y N 209 TRP CD1 NE1 sing Y N 210 TRP CD1 HD1 sing N N 211 TRP CD2 CE2 doub Y N 212 TRP CD2 CE3 sing Y N 213 TRP NE1 CE2 sing Y N 214 TRP NE1 HE1 sing N N 215 TRP CE2 CZ2 sing Y N 216 TRP CE3 CZ3 doub Y N 217 TRP CE3 HE3 sing N N 218 TRP CZ2 CH2 doub Y N 219 TRP CZ2 HZ2 sing N N 220 TRP CZ3 CH2 sing Y N 221 TRP CZ3 HZ3 sing N N 222 TRP CH2 HH2 sing N N 223 TRP OXT HXT sing N N 224 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -3.09 _em_helical_entity.axial_rise_per_subunit 4.83 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.average_exposure_time 3.99 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images 3171 _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? EPU 2.6.1 ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot 0.9.6 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 11 CLASSIFICATION ? RELION 3.1 1 ? ? 12 RECONSTRUCTION ? RELION 3.1 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.19.2-4158 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Swiss National Science Foundation' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #