HEADER RNA 29-OCT-21 7Q48 TITLE SOLUTION STRUCTURE OF AN INTRAMOLECULAR RNA G-QUADRUPLEX FORMED BY THE TITLE 2 6A8U17U MUTANT FROM A 22MER GUANINE-RICH SEQUENCE WITHIN THE 5'UTR OF TITLE 3 BCL-2 PROTO ONCO-GENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'- COMPND 3 R(*GP*GP*GP*CP*CP*AP*UP*UP*GP*GP*GP*UP*GP*GP*GP*AP*UP*CP*UP*GP*GP*G)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS G-QUADRUPLEX, BCL-2, MRNA, 5'UTR, INTRAMOLECULAR, RNA EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Z.WANG,S.JURT,A.DOMINGUEZ-MARTIN,S.JOHANNSEN,R.K.O.SIGEL REVDAT 1 16-NOV-22 7Q48 0 JRNL AUTH Z.WANG,S.JURT,A.DOMINGUEZ-MARTIN,S.JOHANNSEN,R.K.O.SIGEL JRNL TITL SOLUTION STRUCTURE OF AN INTRAMOLECULAR RNA G-QUADRUPLEX JRNL TITL 2 FORMED BY THE 6A8U17U MUTANT FROM A 22MER GUANINE-RICH JRNL TITL 3 SEQUENCE WITHIN THE 5'UTR OF BCL-2 PROTO ONCO-GENE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 3.0 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Q48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1292118738. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298; 298; 298; 298; REMARK 210 298; 298; 298 REMARK 210 PH : 7.0; 7.0; 7.0; 7.0; 7.0; 7.0; REMARK 210 7.0; 7.0; 7.0 REMARK 210 IONIC STRENGTH : 2; 2; 2; 2; 2; 2; 2; 2; 2 REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM; 1 ATM; 1 REMARK 210 ATM; 1 ATM; 1 ATM; 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM BCL-2 6A8U17U, 90% REMARK 210 H2O/10% D2O; 1.0 MM BCL-2 REMARK 210 6A8U17U, 100% D2O; 0.5 MM G & U REMARK 210 15N-LABELED BCL-2 6A8U17U, 90% REMARK 210 H2O/10% D2O; 0.5 MM G & U 15N- REMARK 210 LABELED BCL-2 6A8U17U, 100% D2O; REMARK 210 0.5 MM A & C 15N-LABELED BCL-2 REMARK 210 6A8U17U, 100% D2O; 0.5 MM A 13C, REMARK 210 15N-LABELED BCL-2 6A8U17U, 100% REMARK 210 D2O; 0.3 MM C 13C, 15N-LABELED REMARK 210 BCL-2 6A8U17U, 100% D2O; 0.3 MM REMARK 210 G 13C-LABELED BCL-2 6A8U17U, 100% REMARK 210 D2O; 0.5 MM U 13C, 15N-LABELED REMARK 210 BCL-2 6A8U17U, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-13C HSQC; 2D 1H-15N HSQC; REMARK 210 JR-HMBC; H8N2 HNN-COSY; H1N2 HNN- REMARK 210 COSY; H1PC6/8 HMBC; LONG-RANGE REMARK 210 1H-15N HSQC; CONSTANT-TIME 1H- REMARK 210 13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 4.0.6, NMRFAM-SPARKY REMARK 210 1.414, X-PLOR NIH 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34674 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF AN INTRAMOLECULAR RNA G-QUADRUPLEX FORMED BY REMARK 900 THE 6A8U17U MUTANT FROM A 22MER GUANINE-RICH SEQUENCE WITHIN THE 5' REMARK 900 UTR OF BCL-2 PROTO ONCO-GENE DBREF 7Q48 A 1 22 PDB 7Q48 7Q48 1 22 SEQRES 1 A 22 G G G C C A U U G G G U G SEQRES 2 A 22 G G A U C U G G G CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1