data_7Q5A # _entry.id 7Q5A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.357 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7Q5A pdb_00007q5a 10.2210/pdb7q5a/pdb WWPDB D_1292118996 ? ? EMDB EMD-13830 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Lanreotide nanotube' _pdbx_database_related.db_id EMD-13830 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7Q5A _pdbx_database_status.recvd_initial_deposition_date 2021-11-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Pieri, L.' 1 0000-0003-0779-9014 'Wang, F.' 2 0000-0003-1008-663X 'Arteni, A.A.' 3 0000-0001-6462-905X 'Bressanelli, S.' 4 0000-0002-0921-6727 'Egelman, E.H.' 5 0000-0003-4844-5212 'Paternostre, M.' 6 0000-0002-3303-8959 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 119 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Atomic structure of Lanreotide nanotubes revealed by cryo-EM.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2120346119 _citation.pdbx_database_id_PubMed 35042822 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pieri, L.' 1 0000-0003-0779-9014 primary 'Wang, F.' 2 0000-0003-1008-663X primary 'Arteni, A.A.' 3 0000-0001-6462-905X primary 'Vos, M.' 4 0000-0002-6046-9949 primary 'Winter, J.M.' 5 ? primary 'Le Du, M.H.' 6 ? primary 'Artzner, F.' 7 0000-0002-5613-576X primary 'Gobeaux, F.' 8 0000-0003-4410-2378 primary 'Legrand, P.' 9 0000-0003-2431-2255 primary 'Boulard, Y.' 10 0000-0002-2857-1732 primary 'Bressanelli, S.' 11 0000-0002-0921-6727 primary 'Egelman, E.H.' 12 0000-0003-4844-5212 primary 'Paternostre, M.' 13 0000-0002-3303-8959 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7Q5A _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Lanreotide _entity.formula_weight 1098.339 _entity.pdbx_number_of_molecules 8 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(4J2)CY(DTR)KVCT(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XCYWKVCTX _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 4J2 n 1 2 CYS n 1 3 TYR n 1 4 DTR n 1 5 LYS n 1 6 VAL n 1 7 CYS n 1 8 THR n 1 9 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7Q5A _struct_ref.pdbx_db_accession 7Q5A _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7Q5A A 1 ? 9 ? 7Q5A 1 ? 9 ? 1 9 2 1 7Q5A B 1 ? 9 ? 7Q5A 101 ? 109 ? 101 109 3 1 7Q5A C 1 ? 9 ? 7Q5A 201 ? 209 ? 201 209 4 1 7Q5A D 1 ? 9 ? 7Q5A 301 ? 309 ? 301 309 5 1 7Q5A E 1 ? 9 ? 7Q5A 401 ? 409 ? 401 409 6 1 7Q5A F 1 ? 9 ? 7Q5A 501 ? 509 ? 501 509 7 1 7Q5A G 1 ? 9 ? 7Q5A 601 ? 609 ? 601 609 8 1 7Q5A H 1 ? 9 ? 7Q5A 701 ? 709 ? 701 709 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4J2 'D-peptide linking' . '(2R)-2-amino-3-(naphthalen-2-yl)propanoic acid' ? 'C13 H13 N O2' 215.248 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DTR 'D-peptide linking' . D-TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7Q5A _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 18.52 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7Q5A _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _struct.entry_id 7Q5A _struct.title 'Lanreotide nanotube' _struct.pdbx_structure_determination_methodology ? _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7Q5A _struct_keywords.text 'Lanreotide, nanotube, assembly, HORMONE' _struct_keywords.pdbx_keywords HORMONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 7 SG ? ? A CYS 2 A CYS 7 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf2 disulf ? ? B CYS 2 SG ? ? ? 1_555 B CYS 7 SG ? ? B CYS 102 B CYS 107 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf3 disulf ? ? C CYS 2 SG ? ? ? 1_555 C CYS 7 SG ? ? C CYS 202 C CYS 207 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf4 disulf ? ? D CYS 2 SG ? ? ? 1_555 D CYS 7 SG ? ? D CYS 302 D CYS 307 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf5 disulf ? ? E CYS 2 SG ? ? ? 1_555 E CYS 7 SG ? ? E CYS 402 E CYS 407 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf6 disulf ? ? F CYS 2 SG ? ? ? 1_555 F CYS 7 SG ? ? F CYS 502 F CYS 507 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf7 disulf ? ? G CYS 2 SG ? ? ? 1_555 G CYS 7 SG ? ? G CYS 602 G CYS 607 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf8 disulf ? ? H CYS 2 SG ? ? ? 1_555 H CYS 7 SG ? ? H CYS 702 H CYS 707 1_555 ? ? ? ? ? ? ? 2.036 ? ? covale1 covale both ? A 4J2 1 C ? ? ? 1_555 A CYS 2 N ? ? A 4J2 1 A CYS 2 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale2 covale both ? A TYR 3 C ? ? ? 1_555 A DTR 4 N ? ? A TYR 3 A DTR 4 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale3 covale both ? A DTR 4 C ? ? ? 1_555 A LYS 5 N ? ? A DTR 4 A LYS 5 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A THR 8 C ? ? ? 1_555 A NH2 9 N ? ? A THR 8 A NH2 9 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale5 covale both ? B 4J2 1 C ? ? ? 1_555 B CYS 2 N ? ? B 4J2 101 B CYS 102 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? B TYR 3 C ? ? ? 1_555 B DTR 4 N ? ? B TYR 103 B DTR 104 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale7 covale both ? B DTR 4 C ? ? ? 1_555 B LYS 5 N ? ? B DTR 104 B LYS 105 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale8 covale both ? B THR 8 C ? ? ? 1_555 B NH2 9 N ? ? B THR 108 B NH2 109 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale9 covale both ? C 4J2 1 C ? ? ? 1_555 C CYS 2 N ? ? C 4J2 201 C CYS 202 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale10 covale both ? C TYR 3 C ? ? ? 1_555 C DTR 4 N ? ? C TYR 203 C DTR 204 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale11 covale both ? C DTR 4 C ? ? ? 1_555 C LYS 5 N ? ? C DTR 204 C LYS 205 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale12 covale both ? C THR 8 C ? ? ? 1_555 C NH2 9 N ? ? C THR 208 C NH2 209 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale13 covale both ? D 4J2 1 C ? ? ? 1_555 D CYS 2 N ? ? D 4J2 301 D CYS 302 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale14 covale both ? D TYR 3 C ? ? ? 1_555 D DTR 4 N ? ? D TYR 303 D DTR 304 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale15 covale both ? D DTR 4 C ? ? ? 1_555 D LYS 5 N ? ? D DTR 304 D LYS 305 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale16 covale both ? D THR 8 C ? ? ? 1_555 D NH2 9 N ? ? D THR 308 D NH2 309 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale17 covale both ? E 4J2 1 C ? ? ? 1_555 E CYS 2 N ? ? E 4J2 401 E CYS 402 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale18 covale both ? E TYR 3 C ? ? ? 1_555 E DTR 4 N ? ? E TYR 403 E DTR 404 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale19 covale both ? E DTR 4 C ? ? ? 1_555 E LYS 5 N ? ? E DTR 404 E LYS 405 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale20 covale both ? E THR 8 C ? ? ? 1_555 E NH2 9 N ? ? E THR 408 E NH2 409 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale21 covale both ? F 4J2 1 C ? ? ? 1_555 F CYS 2 N ? ? F 4J2 501 F CYS 502 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale22 covale both ? F TYR 3 C ? ? ? 1_555 F DTR 4 N ? ? F TYR 503 F DTR 504 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale23 covale both ? F DTR 4 C ? ? ? 1_555 F LYS 5 N ? ? F DTR 504 F LYS 505 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale24 covale both ? F THR 8 C ? ? ? 1_555 F NH2 9 N ? ? F THR 508 F NH2 509 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale25 covale both ? G 4J2 1 C ? ? ? 1_555 G CYS 2 N ? ? G 4J2 601 G CYS 602 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale26 covale both ? G TYR 3 C ? ? ? 1_555 G DTR 4 N ? ? G TYR 603 G DTR 604 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale27 covale both ? G DTR 4 C ? ? ? 1_555 G LYS 5 N ? ? G DTR 604 G LYS 605 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale28 covale both ? G THR 8 C ? ? ? 1_555 G NH2 9 N ? ? G THR 608 G NH2 609 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale29 covale both ? H 4J2 1 C ? ? ? 1_555 H CYS 2 N ? ? H 4J2 701 H CYS 702 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale30 covale both ? H TYR 3 C ? ? ? 1_555 H DTR 4 N ? ? H TYR 703 H DTR 704 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale31 covale both ? H DTR 4 C ? ? ? 1_555 H LYS 5 N ? ? H DTR 704 H LYS 705 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale32 covale both ? H THR 8 C ? ? ? 1_555 H NH2 9 N ? ? H THR 708 H NH2 709 1_555 ? ? ? ? ? ? ? 1.326 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 4 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 4 ? AA6 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 CYS A 2 ? TYR A 3 ? CYS A 2 TYR A 3 AA1 2 VAL A 6 ? CYS A 7 ? VAL A 6 CYS A 7 AA2 1 CYS B 2 ? TYR B 3 ? CYS B 102 TYR B 103 AA2 2 VAL B 6 ? NH2 B 9 ? VAL B 106 NH2 B 109 AA2 3 VAL C 6 ? CYS C 7 ? VAL C 206 CYS C 207 AA2 4 CYS C 2 ? TYR C 3 ? CYS C 202 TYR C 203 AA3 1 CYS D 2 ? TYR D 3 ? CYS D 302 TYR D 303 AA3 2 VAL D 6 ? CYS D 7 ? VAL D 306 CYS D 307 AA4 1 CYS E 2 ? TYR E 3 ? CYS E 402 TYR E 403 AA4 2 VAL E 6 ? CYS E 7 ? VAL E 406 CYS E 407 AA5 1 CYS F 2 ? TYR F 3 ? CYS F 502 TYR F 503 AA5 2 VAL F 6 ? NH2 F 9 ? VAL F 506 NH2 F 509 AA5 3 VAL G 6 ? CYS G 7 ? VAL G 606 CYS G 607 AA5 4 CYS G 2 ? TYR G 3 ? CYS G 602 TYR G 603 AA6 1 CYS H 2 ? TYR H 3 ? CYS H 702 TYR H 703 AA6 2 VAL H 6 ? CYS H 7 ? VAL H 706 CYS H 707 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TYR A 3 ? N TYR A 3 O VAL A 6 ? O VAL A 6 AA2 1 2 N TYR B 3 ? N TYR B 103 O VAL B 6 ? O VAL B 106 AA2 2 3 N CYS B 7 ? N CYS B 107 O CYS C 7 ? O CYS C 207 AA2 3 4 O VAL C 6 ? O VAL C 206 N TYR C 3 ? N TYR C 203 AA3 1 2 N TYR D 3 ? N TYR D 303 O VAL D 6 ? O VAL D 306 AA4 1 2 N TYR E 3 ? N TYR E 403 O VAL E 6 ? O VAL E 406 AA5 1 2 N TYR F 3 ? N TYR F 503 O VAL F 6 ? O VAL F 506 AA5 2 3 N CYS F 7 ? N CYS F 507 O CYS G 7 ? O CYS G 607 AA5 3 4 O VAL G 6 ? O VAL G 606 N TYR G 3 ? N TYR G 603 AA6 1 2 N TYR H 3 ? N TYR H 703 O VAL H 6 ? O VAL H 706 # _atom_sites.entry_id 7Q5A _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 4J2 1 1 1 4J2 NAH A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 DTR 4 4 4 DTR DTR A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 NH2 9 9 9 NH2 NH2 A . n B 1 1 4J2 1 101 101 4J2 NAH B . n B 1 2 CYS 2 102 102 CYS CYS B . n B 1 3 TYR 3 103 103 TYR TYR B . n B 1 4 DTR 4 104 104 DTR DTR B . n B 1 5 LYS 5 105 105 LYS LYS B . n B 1 6 VAL 6 106 106 VAL VAL B . n B 1 7 CYS 7 107 107 CYS CYS B . n B 1 8 THR 8 108 108 THR THR B . n B 1 9 NH2 9 109 109 NH2 NH2 B . n C 1 1 4J2 1 201 201 4J2 NAH C . n C 1 2 CYS 2 202 202 CYS CYS C . n C 1 3 TYR 3 203 203 TYR TYR C . n C 1 4 DTR 4 204 204 DTR DTR C . n C 1 5 LYS 5 205 205 LYS LYS C . n C 1 6 VAL 6 206 206 VAL VAL C . n C 1 7 CYS 7 207 207 CYS CYS C . n C 1 8 THR 8 208 208 THR THR C . n C 1 9 NH2 9 209 209 NH2 NH2 C . n D 1 1 4J2 1 301 301 4J2 NAH D . n D 1 2 CYS 2 302 302 CYS CYS D . n D 1 3 TYR 3 303 303 TYR TYR D . n D 1 4 DTR 4 304 304 DTR DTR D . n D 1 5 LYS 5 305 305 LYS LYS D . n D 1 6 VAL 6 306 306 VAL VAL D . n D 1 7 CYS 7 307 307 CYS CYS D . n D 1 8 THR 8 308 308 THR THR D . n D 1 9 NH2 9 309 309 NH2 NH2 D . n E 1 1 4J2 1 401 401 4J2 NAH E . n E 1 2 CYS 2 402 402 CYS CYS E . n E 1 3 TYR 3 403 403 TYR TYR E . n E 1 4 DTR 4 404 404 DTR DTR E . n E 1 5 LYS 5 405 405 LYS LYS E . n E 1 6 VAL 6 406 406 VAL VAL E . n E 1 7 CYS 7 407 407 CYS CYS E . n E 1 8 THR 8 408 408 THR THR E . n E 1 9 NH2 9 409 409 NH2 NH2 E . n F 1 1 4J2 1 501 501 4J2 NAH F . n F 1 2 CYS 2 502 502 CYS CYS F . n F 1 3 TYR 3 503 503 TYR TYR F . n F 1 4 DTR 4 504 504 DTR DTR F . n F 1 5 LYS 5 505 505 LYS LYS F . n F 1 6 VAL 6 506 506 VAL VAL F . n F 1 7 CYS 7 507 507 CYS CYS F . n F 1 8 THR 8 508 508 THR THR F . n F 1 9 NH2 9 509 509 NH2 NH2 F . n G 1 1 4J2 1 601 601 4J2 NAH G . n G 1 2 CYS 2 602 602 CYS CYS G . n G 1 3 TYR 3 603 603 TYR TYR G . n G 1 4 DTR 4 604 604 DTR DTR G . n G 1 5 LYS 5 605 605 LYS LYS G . n G 1 6 VAL 6 606 606 VAL VAL G . n G 1 7 CYS 7 607 607 CYS CYS G . n G 1 8 THR 8 608 608 THR THR G . n G 1 9 NH2 9 609 609 NH2 NH2 G . n H 1 1 4J2 1 701 701 4J2 NAH H . n H 1 2 CYS 2 702 702 CYS CYS H . n H 1 3 TYR 3 703 703 TYR TYR H . n H 1 4 DTR 4 704 704 DTR DTR H . n H 1 5 LYS 5 705 705 LYS LYS H . n H 1 6 VAL 6 706 706 VAL VAL H . n H 1 7 CYS 7 707 707 CYS CYS H . n H 1 8 THR 8 708 708 THR THR H . n H 1 9 NH2 9 709 709 NH2 NH2 H . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 maite.paternostre@i2bc.paris-saclay.fr Maite Paternostre ? 'principal investigator/group leader' 0000-0002-3303-8959 4 stephane.bressanelli@i2bc.paris-saclay.fr Stephane Bressanelli ? 'principal investigator/group leader' 0000-0002-0921-6727 5 egelman@virginia.edu Edward Egelman H. 'principal investigator/group leader' 0000-0003-4844-5212 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 800-mer _pdbx_struct_assembly.oligomeric_count 800 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression '(1-100)' _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 ? 1.0000000 0.000000 0.000000 0.0000000 0.000000 1.0000000 0.000000 0.0000000 0.000000 0.000000 1.000000 0.0000000 2 'point symmetry operation' ? ? -0.629998 -0.776596 0.000000 523.67503 0.776596 -0.629998 0.000000 185.70024 0.000000 0.000000 1.000000 -52.00000 3 'point symmetry operation' ? ? -0.908282 -0.418359 0.000000 506.27698 0.418359 -0.908282 0.000000 324.20733 0.000000 0.000000 1.000000 -50.96000 4 'point symmetry operation' ? ? -0.999663 0.025968 0.000000 429.47608 -0.025968 -0.999663 0.000000 440.77717 0.000000 0.000000 1.000000 -49.92000 5 'point symmetry operation' ? ? -0.885337 0.464950 0.000000 309.07613 -0.464950 -0.885337 0.000000 511.42246 0.000000 0.000000 1.000000 -48.88000 6 'point symmetry operation' ? ? -0.588830 0.808257 0.000000 169.85257 -0.808257 -0.588830 0.000000 521.60609 0.000000 0.000000 1.000000 -47.84000 7 'point symmetry operation' ? ? -0.171155 0.985244 0.000000 40.45430 -0.985244 -0.171155 0.000000 469.23251 0.000000 0.000000 1.000000 -46.80000 8 'point symmetry operation' ? ? 0.281739 0.959491 0.000000 -52.49161 -0.959491 0.281739 0.000000 365.07895 0.000000 -0.000000 1.000000 -45.76000 9 'point symmetry operation' ? ? 0.676658 0.736298 0.000000 -89.85910 -0.736298 0.676658 0.000000 230.57774 0.000000 -0.000000 1.000000 -44.72000 10 'point symmetry operation' ? ? 0.932336 0.361592 0.000000 -63.95883 -0.361592 0.932336 0.000000 93.40602 0.000000 -0.000000 1.000000 -43.68000 11 'point symmetry operation' ? ? 0.996163 -0.087521 0.000000 19.87954 0.087521 0.996163 0.000000 -18.20954 -0.000000 0.000000 1.000000 -42.64000 12 'point symmetry operation' ? ? 0.855002 -0.518624 0.000000 144.40407 0.518624 0.855002 0.000000 -81.30111 -0.000000 0.000000 1.000000 -41.60000 13 'point symmetry operation' ? ? 0.537903 -0.843007 0.000000 283.99058 0.843007 0.537903 0.000000 -82.88596 -0.000000 0.000000 1.000000 -40.56000 14 'point symmetry operation' ? ? 0.110116 -0.993919 0.000000 409.91549 0.993919 0.110116 0.000000 -22.63795 -0.000000 0.000000 1.000000 -39.52000 15 'point symmetry operation' ? ? -0.340330 -0.940306 0.000000 496.26645 0.940306 -0.340330 0.000000 87.04530 0.000000 0.000000 1.000000 -38.48000 16 'point symmetry operation' ? ? -0.720745 -0.693201 0.000000 525.27450 0.693201 -0.720745 0.000000 223.59360 0.000000 0.000000 1.000000 -37.44000 17 'point symmetry operation' ? ? -0.952847 -0.303451 0.000000 490.97046 0.303451 -0.952847 0.000000 358.90856 0.000000 0.000000 1.000000 -36.40000 18 'point symmetry operation' ? ? -0.988876 0.148741 0.000000 400.41330 -0.148741 -0.988876 0.000000 465.14559 0.000000 0.000000 1.000000 -35.36000 19 'point symmetry operation' ? ? -0.821418 0.570327 0.000000 272.23751 -0.570327 -0.821418 0.000000 520.44363 0.000000 0.000000 1.000000 -34.32000 20 'point symmetry operation' ? ? -0.484932 0.874552 0.000000 132.81863 -0.874552 -0.484932 0.000000 513.42366 0.000000 0.000000 1.000000 -33.28000 21 'point symmetry operation' ? ? -0.048658 0.998815 0.000000 10.84573 -0.998815 -0.048658 0.000000 445.53024 0.000000 0.000000 1.000000 -32.24000 22 'point symmetry operation' ? ? 0.397628 0.917547 0.000000 -68.58206 -0.917547 0.397628 0.000000 330.73420 0.000000 -0.000000 1.000000 -31.20000 23 'point symmetry operation' ? ? 0.762092 0.647468 0.000000 -89.12041 -0.647468 0.762092 0.000000 192.65783 0.000000 -0.000000 1.000000 -30.16000 24 'point symmetry operation' ? ? 0.969736 0.244157 0.000000 -46.54300 -0.244157 0.969736 0.000000 59.71398 0.000000 -0.000000 1.000000 -29.12000 25 'point symmetry operation' ? ? 0.977831 -0.209397 0.000000 50.38875 0.209397 0.977831 0.000000 -40.74070 -0.000000 0.000000 1.000000 -28.08000 26 'point symmetry operation' ? ? 0.784711 -0.619861 0.000000 181.72858 0.619861 0.784711 0.000000 -88.03501 -0.000000 0.000000 1.000000 -27.04000 27 'point symmetry operation' ? ? 0.430117 -0.902773 0.000000 320.44991 0.902773 0.430117 0.000000 -72.43692 -0.000000 0.000000 1.000000 -26.00000 28 'point symmetry operation' ? ? -0.012985 -0.999916 0.000000 438.00717 0.999916 -0.012985 0.000000 2.84386 0.000000 0.000000 1.000000 -24.96000 29 'point symmetry operation' ? ? -0.453415 -0.891300 0.000000 510.20988 0.891300 -0.453415 0.000000 122.31633 0.000000 0.000000 1.000000 -23.92000 30 'point symmetry operation' ? ? -0.800543 -0.599275 0.000000 522.20046 0.599275 -0.800543 0.000000 261.39592 0.000000 0.000000 1.000000 -22.88000 31 'point symmetry operation' ? ? -0.982939 -0.183934 0.000000 471.51151 0.183934 -0.982939 0.000000 391.46335 0.000000 0.000000 1.000000 -21.84000 32 'point symmetry operation' ? ? -0.963069 0.269256 0.000000 368.57363 -0.269256 -0.963069 0.000000 485.75384 0.000000 0.000000 1.000000 -20.80000 33 'point symmetry operation' ? ? -0.745022 0.667040 0.000000 234.56897 -0.667040 -0.745022 0.000000 524.86466 0.000000 0.000000 1.000000 -19.76000 34 'point symmetry operation' ? ? -0.373668 0.927563 0.000000 97.07250 -0.927563 -0.373668 0.000000 500.74774 0.000000 0.000000 1.000000 -18.72000 35 'point symmetry operation' ? ? 0.074578 0.997215 0.000000 -15.62228 -0.997215 0.074578 0.000000 418.36575 0.000000 -0.000000 1.000000 -17.68000 36 'point symmetry operation' ? ? 0.507478 0.861665 0.000000 -80.32547 -0.861665 0.507478 0.000000 294.67096 0.000000 -0.000000 1.000000 -16.64000 37 'point symmetry operation' ? ? 0.835951 0.548804 0.000000 -83.72270 -0.548804 0.835951 0.000000 155.11680 0.000000 -0.000000 1.000000 -15.60000 38 'point symmetry operation' ? ? 0.992405 0.123013 0.000000 -25.11489 -0.123013 0.992405 0.000000 28.42019 0.000000 -0.000000 1.000000 -14.56000 39 'point symmetry operation' ? ? 0.944646 -0.328092 0.000000 83.43786 0.328092 0.944646 0.000000 -59.34772 -0.000000 0.000000 1.000000 -13.52000 40 'point symmetry operation' ? ? 0.702501 -0.711683 0.000000 219.59798 0.711683 0.702501 0.000000 -90.12639 -0.000000 0.000000 1.000000 -12.48000 41 'point symmetry operation' ? ? 0.315798 -0.948826 0.000000 355.34697 0.948826 0.315798 0.000000 -57.58229 -0.000000 0.000000 1.000000 -11.44000 42 'point symmetry operation' ? ? -0.135888 -0.990724 0.000000 462.75091 0.990724 -0.135888 0.000000 31.58776 0.000000 0.000000 1.000000 -10.40000 43 'point symmetry operation' ? ? -0.559612 -0.828754 0.000000 519.70863 0.828754 -0.559612 0.000000 159.03470 0.000000 0.000000 1.000000 -9.36000 44 'point symmetry operation' ? ? -0.868181 -0.496247 0.000000 514.49960 0.496247 -0.868181 0.000000 298.53299 0.000000 0.000000 1.000000 -8.32000 45 'point symmetry operation' ? ? -0.998099 -0.061623 0.000000 448.19570 0.061623 -0.998099 0.000000 421.37719 0.000000 0.000000 1.000000 -7.28000 46 'point symmetry operation' ? ? -0.922632 0.385681 0.000000 334.44070 -0.385681 -0.922632 0.000000 502.28890 0.000000 0.000000 1.000000 -6.24000 47 'point symmetry operation' ? ? -0.657309 0.753621 0.000000 196.64267 -0.753621 -0.657309 0.000000 524.61842 0.000000 0.000000 1.000000 -5.20000 48 'point symmetry operation' ? ? -0.256728 0.966484 0.000000 63.15715 -0.966484 -0.256728 0.000000 483.77086 0.000000 0.000000 1.000000 -4.16000 49 'point symmetry operation' ? ? 0.196682 0.980467 0.000000 -38.54770 -0.980467 0.196682 0.000000 388.15168 0.000000 -0.000000 1.000000 -3.12000 50 'point symmetry operation' ? ? 0.609620 0.792694 0.000000 -87.54346 -0.792694 0.609620 0.000000 257.43703 0.000000 -0.000000 1.000000 -2.08000 51 'point symmetry operation' ? ? 0.897112 0.441803 0.000000 -73.74797 -0.441803 0.897112 0.000000 118.52486 0.000000 -0.000000 1.000000 -1.04000 52 'point symmetry operation' ? ? 0.897112 -0.441803 0.000000 118.52486 0.441803 0.897112 0.000000 -73.74797 -0.000000 0.000000 1.000000 1.04000 53 'point symmetry operation' ? ? 0.609620 -0.792694 0.000000 257.43703 0.792694 0.609620 0.000000 -87.54346 -0.000000 0.000000 1.000000 2.08000 54 'point symmetry operation' ? ? 0.196682 -0.980467 0.000000 388.15168 0.980467 0.196682 0.000000 -38.54770 -0.000000 0.000000 1.000000 3.12000 55 'point symmetry operation' ? ? -0.256728 -0.966484 0.000000 483.77086 0.966484 -0.256728 0.000000 63.15715 0.000000 0.000000 1.000000 4.16000 56 'point symmetry operation' ? ? -0.657309 -0.753621 0.000000 524.61842 0.753621 -0.657309 0.000000 196.64267 0.000000 0.000000 1.000000 5.20000 57 'point symmetry operation' ? ? -0.922632 -0.385681 0.000000 502.28890 0.385681 -0.922632 0.000000 334.44070 0.000000 0.000000 1.000000 6.24000 58 'point symmetry operation' ? ? -0.998099 0.061623 0.000000 421.37719 -0.061623 -0.998099 0.000000 448.19570 0.000000 0.000000 1.000000 7.28000 59 'point symmetry operation' ? ? -0.868181 0.496247 0.000000 298.53299 -0.496247 -0.868181 0.000000 514.49960 0.000000 0.000000 1.000000 8.32000 60 'point symmetry operation' ? ? -0.559612 0.828754 0.000000 159.03470 -0.828754 -0.559612 0.000000 519.70863 0.000000 0.000000 1.000000 9.36000 61 'point symmetry operation' ? ? -0.135888 0.990724 0.000000 31.58776 -0.990724 -0.135888 0.000000 462.75091 0.000000 0.000000 1.000000 10.40000 62 'point symmetry operation' ? ? 0.315798 0.948826 0.000000 -57.58229 -0.948826 0.315798 0.000000 355.34697 0.000000 -0.000000 1.000000 11.44000 63 'point symmetry operation' ? ? 0.702501 0.711683 0.000000 -90.12639 -0.711683 0.702501 0.000000 219.59798 0.000000 -0.000000 1.000000 12.48000 64 'point symmetry operation' ? ? 0.944646 0.328092 0.000000 -59.34772 -0.328092 0.944646 0.000000 83.43786 0.000000 -0.000000 1.000000 13.52000 65 'point symmetry operation' ? ? 0.992405 -0.123013 0.000000 28.42019 0.123013 0.992405 0.000000 -25.11489 -0.000000 0.000000 1.000000 14.56000 66 'point symmetry operation' ? ? 0.835951 -0.548804 0.000000 155.11680 0.548804 0.835951 0.000000 -83.72270 -0.000000 0.000000 1.000000 15.60000 67 'point symmetry operation' ? ? 0.507478 -0.861665 0.000000 294.67096 0.861665 0.507478 0.000000 -80.32547 -0.000000 0.000000 1.000000 16.64000 68 'point symmetry operation' ? ? 0.074578 -0.997215 0.000000 418.36575 0.997215 0.074578 0.000000 -15.62228 -0.000000 0.000000 1.000000 17.68000 69 'point symmetry operation' ? ? -0.373668 -0.927563 0.000000 500.74774 0.927563 -0.373668 0.000000 97.07250 0.000000 0.000000 1.000000 18.72000 70 'point symmetry operation' ? ? -0.745022 -0.667040 0.000000 524.86466 0.667040 -0.745022 0.000000 234.56897 0.000000 0.000000 1.000000 19.76000 71 'point symmetry operation' ? ? -0.963069 -0.269256 0.000000 485.75384 0.269256 -0.963069 0.000000 368.57363 0.000000 0.000000 1.000000 20.80000 72 'point symmetry operation' ? ? -0.982939 0.183934 0.000000 391.46335 -0.183934 -0.982939 0.000000 471.51151 0.000000 0.000000 1.000000 21.84000 73 'point symmetry operation' ? ? -0.800543 0.599275 0.000000 261.39592 -0.599275 -0.800543 0.000000 522.20046 0.000000 0.000000 1.000000 22.88000 74 'point symmetry operation' ? ? -0.453415 0.891300 0.000000 122.31633 -0.891300 -0.453415 0.000000 510.20988 0.000000 0.000000 1.000000 23.92000 75 'point symmetry operation' ? ? -0.012985 0.999916 0.000000 2.84386 -0.999916 -0.012985 0.000000 438.00717 0.000000 0.000000 1.000000 24.96000 76 'point symmetry operation' ? ? 0.430117 0.902773 0.000000 -72.43692 -0.902773 0.430117 0.000000 320.44991 0.000000 -0.000000 1.000000 26.00000 77 'point symmetry operation' ? ? 0.784711 0.619861 0.000000 -88.03501 -0.619861 0.784711 0.000000 181.72858 0.000000 -0.000000 1.000000 27.04000 78 'point symmetry operation' ? ? 0.977831 0.209397 0.000000 -40.74070 -0.209397 0.977831 0.000000 50.38875 0.000000 -0.000000 1.000000 28.08000 79 'point symmetry operation' ? ? 0.969736 -0.244157 0.000000 59.71398 0.244157 0.969736 0.000000 -46.54300 -0.000000 0.000000 1.000000 29.12000 80 'point symmetry operation' ? ? 0.762092 -0.647468 0.000000 192.65783 0.647468 0.762092 0.000000 -89.12041 -0.000000 0.000000 1.000000 30.16000 81 'point symmetry operation' ? ? 0.397628 -0.917547 0.000000 330.73420 0.917547 0.397628 0.000000 -68.58206 -0.000000 0.000000 1.000000 31.20000 82 'point symmetry operation' ? ? -0.048658 -0.998815 0.000000 445.53024 0.998815 -0.048658 0.000000 10.84573 0.000000 0.000000 1.000000 32.24000 83 'point symmetry operation' ? ? -0.484932 -0.874552 0.000000 513.42366 0.874552 -0.484932 0.000000 132.81863 0.000000 0.000000 1.000000 33.28000 84 'point symmetry operation' ? ? -0.821418 -0.570327 0.000000 520.44363 0.570327 -0.821418 0.000000 272.23751 0.000000 0.000000 1.000000 34.32000 85 'point symmetry operation' ? ? -0.988876 -0.148741 0.000000 465.14559 0.148741 -0.988876 0.000000 400.41330 0.000000 0.000000 1.000000 35.36000 86 'point symmetry operation' ? ? -0.952847 0.303451 0.000000 358.90856 -0.303451 -0.952847 0.000000 490.97046 0.000000 0.000000 1.000000 36.40000 87 'point symmetry operation' ? ? -0.720745 0.693201 0.000000 223.59360 -0.693201 -0.720745 0.000000 525.27450 0.000000 0.000000 1.000000 37.44000 88 'point symmetry operation' ? ? -0.340330 0.940306 0.000000 87.04530 -0.940306 -0.340330 0.000000 496.26645 0.000000 0.000000 1.000000 38.48000 89 'point symmetry operation' ? ? 0.110116 0.993919 0.000000 -22.63795 -0.993919 0.110116 0.000000 409.91549 0.000000 -0.000000 1.000000 39.52000 90 'point symmetry operation' ? ? 0.537903 0.843007 0.000000 -82.88596 -0.843007 0.537903 0.000000 283.99058 0.000000 -0.000000 1.000000 40.56000 91 'point symmetry operation' ? ? 0.855002 0.518624 0.000000 -81.30111 -0.518624 0.855002 0.000000 144.40407 0.000000 -0.000000 1.000000 41.60000 92 'point symmetry operation' ? ? 0.996163 0.087521 0.000000 -18.20954 -0.087521 0.996163 0.000000 19.87954 0.000000 -0.000000 1.000000 42.64000 93 'point symmetry operation' ? ? 0.932336 -0.361592 0.000000 93.40602 0.361592 0.932336 0.000000 -63.95883 -0.000000 0.000000 1.000000 43.68000 94 'point symmetry operation' ? ? 0.676658 -0.736298 0.000000 230.57774 0.736298 0.676658 0.000000 -89.85910 -0.000000 0.000000 1.000000 44.72000 95 'point symmetry operation' ? ? 0.281739 -0.959491 0.000000 365.07895 0.959491 0.281739 0.000000 -52.49161 -0.000000 0.000000 1.000000 45.76000 96 'point symmetry operation' ? ? -0.171155 -0.985244 0.000000 469.23251 0.985244 -0.171155 0.000000 40.45430 0.000000 0.000000 1.000000 46.80000 97 'point symmetry operation' ? ? -0.588830 -0.808257 0.000000 521.60609 0.808257 -0.588830 0.000000 169.85257 0.000000 0.000000 1.000000 47.84000 98 'point symmetry operation' ? ? -0.885337 -0.464950 0.000000 511.42246 0.464950 -0.885337 0.000000 309.07613 0.000000 0.000000 1.000000 48.88000 99 'point symmetry operation' ? ? -0.999663 -0.025968 0.000000 440.77717 0.025968 -0.999663 0.000000 429.47608 0.000000 0.000000 1.000000 49.92000 100 'point symmetry operation' ? ? -0.908282 0.418359 0.000000 324.20733 -0.418359 -0.908282 0.000000 506.27698 0.000000 0.000000 1.000000 50.96000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-04-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7Q5A _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _em_3d_fitting.entry_id 7Q5A _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7Q5A _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 20 _em_3d_reconstruction.num_particles 2264921 _em_3d_reconstruction.resolution 2.46 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 6 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name Lanreotide _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 7Q5A _em_image_scans.id 1 _em_image_scans.dimension_height 4092 _em_image_scans.dimension_width 5760 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 7Q5A _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 100 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 2400 _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_magnification 105000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'Current intensity 15 mA' _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'PELCO Ultrathin Carbon with Lacey Carbon' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 295 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'Blot for 30 seconds before plunging' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7Q5A _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7Q5A _em_experiment.id 1 _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 DTR A 4 ? ? 59.74 -109.23 2 1 DTR C 204 ? ? 52.53 -100.03 3 1 DTR D 304 ? ? 53.28 -104.40 4 1 DTR E 404 ? ? 61.27 -95.93 5 1 DTR F 504 ? ? 55.82 -97.33 # _em_buffer_component.buffer_id 1 _em_buffer_component.id 1 _em_buffer_component.concentration 40 _em_buffer_component.concentration_units mg/ml _em_buffer_component.formula ? _em_buffer_component.name 'Pure water' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 1.096 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 26.219 _em_helical_entity.axial_rise_per_subunit 1.040 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 39 _em_image_recording.average_exposure_time 1.69 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 19497 _em_image_recording.avg_electron_dose_per_subtomogram ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector 'No corrector' _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector 'No corrector' _em_imaging_optics.details 'Bioquantum + K3 camera' # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details 'Template-based picking' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 5109922 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? cryoSPARC 3.2 1 ? ? 2 'IMAGE ACQUISITION' 'FEI Thermofisher' EPU 2.12.1.278REL ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? cryoSPARC 3.2 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? 10 'INITIAL EULER ASSIGNMENT' ? cryoSPARC 3.2 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? cryoSPARC 3.2 1 ? ? 12 CLASSIFICATION ? cryoSPARC 3.2 1 ? ? 13 RECONSTRUCTION ? cryoSPARC 3.2 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 20 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'French Infrastructure for Integrated Structural Biology (FRISBI)' France ANR-10-INSB-05-01 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM122510 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' K99GM138756 3 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 #