HEADER VIRAL PROTEIN 03-NOV-21 7Q5F TITLE CRYSTAL STRUCTURE OF F2F-2020216-01X BOUND TO THE MAIN PROTEASE TITLE 2 (3CLPRO/MPRO) OF SARS-COV-2. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SARS-COV-2, MPRO, 3CLPRO, EXSCALATE4COV, DRUG DISCOVERY, ELETTRA, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.COSTANZI,N.DEMITRI,P.STORICI REVDAT 2 31-JAN-24 7Q5F 1 REMARK REVDAT 1 23-NOV-22 7Q5F 0 JRNL AUTH S.PELLICCIA,C.CERCHIA,F.ESPOSITO,R.CANNALIRE,A.CORONA, JRNL AUTH 2 E.COSTANZI,M.KUZIKOV,P.GRIBBON,A.ZALIANI,M.BRINDISI, JRNL AUTH 3 P.STORICI,E.TRAMONTANO,V.SUMMA JRNL TITL EASY ACCESS TO ALPHA-KETOAMIDES AS SARS-COV-2 AND MERS M PRO JRNL TITL 2 INHIBITORS VIA THE PADAM OXIDATION ROUTE. JRNL REF EUR.J.MED.CHEM. V. 244 14853 2022 JRNL REFN ISSN 0223-5234 JRNL PMID 36332546 JRNL DOI 10.1016/J.EJMECH.2022.114853 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 75837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4300 - 5.2200 1.00 2763 156 0.1862 0.1879 REMARK 3 2 5.2200 - 4.1400 1.00 2676 124 0.1331 0.1421 REMARK 3 3 4.1400 - 3.6200 1.00 2630 131 0.1419 0.1511 REMARK 3 4 3.6200 - 3.2900 1.00 2603 150 0.1559 0.1882 REMARK 3 5 3.2900 - 3.0500 1.00 2575 170 0.1711 0.2087 REMARK 3 6 3.0500 - 2.8700 1.00 2561 141 0.1718 0.1789 REMARK 3 7 2.8700 - 2.7300 1.00 2571 163 0.1665 0.1865 REMARK 3 8 2.7300 - 2.6100 1.00 2581 125 0.1636 0.1936 REMARK 3 9 2.6100 - 2.5100 1.00 2583 119 0.1621 0.1776 REMARK 3 10 2.5100 - 2.4200 1.00 2555 133 0.1708 0.1971 REMARK 3 11 2.4200 - 2.3500 1.00 2586 137 0.1644 0.1824 REMARK 3 12 2.3500 - 2.2800 1.00 2560 141 0.1645 0.2121 REMARK 3 13 2.2800 - 2.2200 1.00 2570 129 0.1680 0.2027 REMARK 3 14 2.2200 - 2.1700 1.00 2546 144 0.1640 0.1864 REMARK 3 15 2.1700 - 2.1200 1.00 2529 163 0.1705 0.2084 REMARK 3 16 2.1200 - 2.0700 1.00 2538 145 0.1795 0.2420 REMARK 3 17 2.0700 - 2.0300 1.00 2552 143 0.1837 0.2214 REMARK 3 18 2.0300 - 1.9900 1.00 2545 116 0.1841 0.2111 REMARK 3 19 1.9900 - 1.9600 1.00 2583 121 0.1857 0.2094 REMARK 3 20 1.9600 - 1.9200 1.00 2516 135 0.2088 0.2154 REMARK 3 21 1.9200 - 1.8900 1.00 2560 125 0.2257 0.2462 REMARK 3 22 1.8900 - 1.8600 1.00 2570 131 0.2354 0.2702 REMARK 3 23 1.8600 - 1.8400 1.00 2530 134 0.2442 0.2524 REMARK 3 24 1.8400 - 1.8100 1.00 2561 132 0.2443 0.3236 REMARK 3 25 1.8100 - 1.7900 1.00 2506 146 0.2560 0.2880 REMARK 3 26 1.7900 - 1.7600 1.00 2578 136 0.2671 0.2903 REMARK 3 27 1.7600 - 1.7400 1.00 2501 131 0.2771 0.3216 REMARK 3 28 1.7400 - 1.7200 1.00 2557 130 0.2933 0.3351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.838 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4989 REMARK 3 ANGLE : 1.267 6784 REMARK 3 CHIRALITY : 0.072 755 REMARK 3 PLANARITY : 0.010 883 REMARK 3 DIHEDRAL : 14.917 1800 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2135 -7.2202 -18.3219 REMARK 3 T TENSOR REMARK 3 T11: 0.1766 T22: 0.2045 REMARK 3 T33: 0.1679 T12: 0.0207 REMARK 3 T13: -0.0013 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 3.8565 L22: 0.6973 REMARK 3 L33: 2.1928 L12: -0.0388 REMARK 3 L13: -1.3319 L23: -0.1178 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: -0.1107 S13: -0.0679 REMARK 3 S21: 0.0263 S22: 0.0012 S23: -0.0573 REMARK 3 S31: 0.0315 S32: 0.2850 S33: 0.0745 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9920 -6.0578 -24.6773 REMARK 3 T TENSOR REMARK 3 T11: 0.1992 T22: 0.3205 REMARK 3 T33: 0.2635 T12: 0.0502 REMARK 3 T13: 0.0072 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 4.0884 L22: 0.6737 REMARK 3 L33: 6.1829 L12: 0.7247 REMARK 3 L13: -1.0337 L23: -1.3794 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: -0.3002 S13: 0.0105 REMARK 3 S21: 0.1362 S22: -0.0586 S23: -0.0563 REMARK 3 S31: -0.3108 S32: 0.4527 S33: 0.0528 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7659 -16.2150 -21.2072 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.1387 REMARK 3 T33: 0.2342 T12: 0.0178 REMARK 3 T13: 0.0564 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 4.3741 L22: 2.1390 REMARK 3 L33: 6.8806 L12: -2.7036 REMARK 3 L13: 3.5928 L23: -2.3948 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: -0.0289 S13: -0.2455 REMARK 3 S21: -0.0395 S22: -0.0619 S23: 0.0723 REMARK 3 S31: 0.3507 S32: 0.3224 S33: -0.0154 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6930 -2.4696 -23.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.1448 T22: 0.1341 REMARK 3 T33: 0.2015 T12: -0.0004 REMARK 3 T13: -0.0008 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.3808 L22: 0.9470 REMARK 3 L33: 3.8434 L12: 0.3440 REMARK 3 L13: 0.3746 L23: 0.7631 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: 0.0461 S13: 0.1319 REMARK 3 S21: 0.0236 S22: -0.0328 S23: -0.0427 REMARK 3 S31: -0.1066 S32: 0.1963 S33: 0.0395 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9543 -4.0476 -29.2845 REMARK 3 T TENSOR REMARK 3 T11: 0.1413 T22: 0.1570 REMARK 3 T33: 0.1656 T12: 0.0048 REMARK 3 T13: 0.0049 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 3.3756 L22: 0.7582 REMARK 3 L33: 2.8643 L12: 0.1182 REMARK 3 L13: -0.5114 L23: 0.2928 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: 0.2057 S13: 0.0854 REMARK 3 S21: -0.0522 S22: 0.0034 S23: -0.0465 REMARK 3 S31: -0.0864 S32: 0.1498 S33: -0.0094 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7405 -8.2456 -35.7951 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.2323 REMARK 3 T33: 0.2121 T12: -0.0020 REMARK 3 T13: -0.0243 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.5079 L22: 1.7198 REMARK 3 L33: 1.8566 L12: -0.0895 REMARK 3 L13: -0.0849 L23: -0.2371 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: 0.0719 S13: -0.0708 REMARK 3 S21: -0.0820 S22: 0.0163 S23: 0.1018 REMARK 3 S31: 0.0259 S32: -0.0203 S33: -0.0023 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0974 -5.8385 -24.3202 REMARK 3 T TENSOR REMARK 3 T11: 0.1579 T22: 0.2710 REMARK 3 T33: 0.2198 T12: -0.0186 REMARK 3 T13: 0.0202 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.8984 L22: 3.2711 REMARK 3 L33: 3.4189 L12: -2.2376 REMARK 3 L13: 0.5953 L23: 0.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: -0.1894 S13: -0.2743 REMARK 3 S21: 0.2675 S22: 0.0968 S23: 0.4936 REMARK 3 S31: -0.0258 S32: -0.2886 S33: -0.0154 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8773 -6.8474 -7.8842 REMARK 3 T TENSOR REMARK 3 T11: 0.2028 T22: 0.1564 REMARK 3 T33: 0.1871 T12: 0.0279 REMARK 3 T13: 0.0199 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.0931 L22: 4.4198 REMARK 3 L33: 6.1502 L12: 1.1966 REMARK 3 L13: -1.9521 L23: -4.1843 REMARK 3 S TENSOR REMARK 3 S11: 0.0969 S12: 0.0056 S13: 0.0074 REMARK 3 S21: -0.1786 S22: -0.1091 S23: 0.1577 REMARK 3 S31: 0.3059 S32: 0.2876 S33: -0.0155 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3242 -16.7812 8.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.3711 T22: 0.2948 REMARK 3 T33: 0.3014 T12: -0.0435 REMARK 3 T13: 0.0237 T23: 0.1350 REMARK 3 L TENSOR REMARK 3 L11: 3.3509 L22: 2.0480 REMARK 3 L33: 3.1602 L12: -0.6989 REMARK 3 L13: 0.6380 L23: 0.2500 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: -0.6773 S13: -0.7603 REMARK 3 S21: 0.0978 S22: 0.0538 S23: 0.2652 REMARK 3 S31: 0.6901 S32: -0.2258 S33: -0.0027 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6153 -3.7472 3.8512 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: 0.2074 REMARK 3 T33: 0.1315 T12: -0.0266 REMARK 3 T13: 0.0135 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 5.8448 L22: 4.1388 REMARK 3 L33: 5.1823 L12: -3.5912 REMARK 3 L13: 1.8615 L23: -1.8676 REMARK 3 S TENSOR REMARK 3 S11: -0.1132 S12: -0.2955 S13: 0.0251 REMARK 3 S21: 0.1775 S22: -0.0036 S23: -0.0028 REMARK 3 S31: -0.0294 S32: 0.3726 S33: 0.1503 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9637 -4.2377 -6.8628 REMARK 3 T TENSOR REMARK 3 T11: 0.1714 T22: 0.1373 REMARK 3 T33: 0.1455 T12: -0.0039 REMARK 3 T13: 0.0039 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 2.7741 L22: 3.4888 REMARK 3 L33: 4.0917 L12: -0.8273 REMARK 3 L13: -0.6525 L23: -0.2765 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: -0.0337 S13: -0.0420 REMARK 3 S21: -0.0057 S22: -0.0479 S23: -0.1672 REMARK 3 S31: 0.0905 S32: 0.0311 S33: 0.0036 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2672 2.4091 -4.8318 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1567 REMARK 3 T33: 0.1724 T12: 0.0078 REMARK 3 T13: 0.0136 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.1337 L22: 1.6947 REMARK 3 L33: 2.7043 L12: 0.4582 REMARK 3 L13: -0.7981 L23: -0.9204 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: 0.0103 S13: 0.0644 REMARK 3 S21: 0.0000 S22: 0.0831 S23: 0.1043 REMARK 3 S31: -0.0425 S32: -0.2033 S33: -0.1283 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9307 24.9589 -18.5437 REMARK 3 T TENSOR REMARK 3 T11: 0.4513 T22: 0.2214 REMARK 3 T33: 0.2708 T12: 0.0566 REMARK 3 T13: 0.0930 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.5807 L22: 3.4193 REMARK 3 L33: 1.4743 L12: 1.7064 REMARK 3 L13: 0.0505 L23: -1.5942 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: -0.0009 S13: 0.2148 REMARK 3 S21: 0.3357 S22: 0.1157 S23: 0.1554 REMARK 3 S31: -0.2286 S32: -0.1795 S33: -0.1160 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 238 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1994 17.8840 -16.1088 REMARK 3 T TENSOR REMARK 3 T11: 0.3182 T22: 0.1662 REMARK 3 T33: 0.2511 T12: -0.0486 REMARK 3 T13: 0.0612 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 2.2909 L22: 3.3845 REMARK 3 L33: 4.5148 L12: -0.3808 REMARK 3 L13: -2.0841 L23: 0.9788 REMARK 3 S TENSOR REMARK 3 S11: 0.1471 S12: -0.1899 S13: 0.2488 REMARK 3 S21: -0.1461 S22: 0.1189 S23: -0.2164 REMARK 3 S31: -0.7113 S32: 0.1872 S33: -0.1831 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Q5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75937 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 103.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BB2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09M SODIUM NITRATE 0.09 SODIUM REMARK 280 PHOSPHATE DIBASIC 0.09M AMMONIUM SULFATE, 0.1M HEPES/MOPS PH 7.5, REMARK 280 20% V/V PEG 500 MME 10 % W/V PEG 20000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.93300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.81550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.22050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.81550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.93300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.22050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -127.38 52.85 REMARK 500 ASN A 51 57.59 -143.09 REMARK 500 ASN A 84 -123.98 55.10 REMARK 500 ASP B 33 -134.11 51.48 REMARK 500 ASN B 51 77.40 -161.26 REMARK 500 ASN B 84 -125.39 52.91 REMARK 500 TYR B 154 -108.36 57.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 813 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 814 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 815 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 816 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 817 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 818 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH B 712 DISTANCE = 6.13 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 221 O REMARK 620 2 ASN B 221 OD1 74.6 REMARK 620 3 PHE B 223 O 109.6 95.2 REMARK 620 4 ASP B 263 O 155.2 118.9 90.7 REMARK 620 5 ASP B 263 OD1 95.6 170.0 89.6 69.7 REMARK 620 6 HOH B 520 O 78.9 96.9 166.7 78.7 79.3 REMARK 620 N 1 2 3 4 5 DBREF 7Q5F A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 7Q5F B 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN HET 90X A 401 94 HET SO4 A 402 5 HET EDO A 403 10 HET CL A 404 1 HET CL A 405 1 HET 90X B 401 94 HET NO3 B 402 4 HET SO4 B 403 5 HET NO3 B 404 4 HET NA B 405 1 HETNAM 90X (S)-1-(2-(2,4-DICHLOROPHENOXY)ACETYL)-N-((S)-3,4-DIOXO- HETNAM 2 90X 1-((S)-2-OXOPYRROLIDIN-3-YL)-4-(PHENETHYLAMINO)BUTAN- HETNAM 3 90X 2-YL)PYRROLIDINE-2-CARBOXAMIDE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM NO3 NITRATE ION HETNAM NA SODIUM ION HETSYN 90X (2S)-1-[2-[2,4-BIS(CHLORANYL)PHENOXY]ETHANOYL]-N-[(2S)- HETSYN 2 90X 3,4-BIS(OXIDANYLIDENE)-1-[(3S)-2- HETSYN 3 90X OXIDANYLIDENEPYRROLIDIN-3-YL]-4-(2-PHENYLETHYLAMINO) HETSYN 4 90X BUTAN-2-YL]PYRROLIDINE-2-CARBOXAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 90X 2(C29 H34 CL2 N4 O6) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 EDO C2 H6 O2 FORMUL 6 CL 2(CL 1-) FORMUL 9 NO3 2(N O3 1-) FORMUL 12 NA NA 1+ FORMUL 13 HOH *530(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 SER A 46 LEU A 50 5 5 HELIX 4 AA4 ASN A 53 ARG A 60 1 8 HELIX 5 AA5 LYS A 61 HIS A 64 5 4 HELIX 6 AA6 ILE A 152 CYS A 156 5 5 HELIX 7 AA7 ILE A 200 ASN A 214 1 15 HELIX 8 AA8 THR A 226 MET A 235 1 10 HELIX 9 AA9 LYS A 236 ASN A 238 5 3 HELIX 10 AB1 THR A 243 LEU A 250 1 8 HELIX 11 AB2 LEU A 250 GLY A 258 1 9 HELIX 12 AB3 ALA A 260 GLY A 275 1 16 HELIX 13 AB4 THR A 292 CYS A 300 1 9 HELIX 14 AB5 SER B 10 GLY B 15 1 6 HELIX 15 AB6 HIS B 41 CYS B 44 5 4 HELIX 16 AB7 THR B 45 ASN B 51 1 7 HELIX 17 AB8 ASN B 53 ARG B 60 1 8 HELIX 18 AB9 SER B 62 PHE B 66 5 5 HELIX 19 AC1 ILE B 200 ASN B 214 1 15 HELIX 20 AC2 THR B 226 TYR B 237 1 12 HELIX 21 AC3 THR B 243 GLY B 258 1 16 HELIX 22 AC4 ALA B 260 GLY B 275 1 16 HELIX 23 AC5 THR B 292 SER B 301 1 10 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 89 N VAL A 36 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 VAL A 157 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASN A 151 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O TYR A 126 N VAL A 114 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 VAL A 157 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 LEU B 67 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N SER B 81 O LYS B 88 SHEET 1 AA5 5 TYR B 101 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O TYR B 126 N VAL B 114 SHEET 1 AA6 3 TYR B 101 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 LINK SG CYS A 145 C19 90X A 401 1555 1555 1.80 LINK SG CYS B 145 C19 90X B 401 1555 1555 1.83 LINK O ASN B 221 NA NA B 405 1555 1555 2.67 LINK OD1 ASN B 221 NA NA B 405 1555 1555 2.20 LINK O PHE B 223 NA NA B 405 1555 1555 2.37 LINK O ASP B 263 NA NA B 405 1555 1555 2.99 LINK OD1 ASP B 263 NA NA B 405 1555 1555 2.02 LINK NA NA B 405 O HOH B 520 1555 1555 2.30 CRYST1 67.866 100.441 103.631 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014735 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009956 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009650 0.00000