HEADER OXIDOREDUCTASE 04-NOV-21 7Q5V TITLE HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH N-OXALYLGLYCINE TITLE 2 (NOG) AND HIF-2 ALPHA CODD (523-542) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 5 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 6 EC: 1.14.11.29; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: EPAS-1,BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP2,CLASS E BASIC COMPND 12 HELIX-LOOP-HELIX PROTEIN 73,BHLHE73,HIF-1-ALPHA-LIKE FACTOR,HLF, COMPND 13 HYPOXIA-INDUCIBLE FACTOR 2-ALPHA,HIF-2-ALPHA,HIF2-ALPHA,MEMBER OF PAS COMPND 14 PROTEIN 2,PAS DOMAIN-CONTAINING PROTEIN 2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PHD2, HIF-2ALPHA, COMPLEX, OXIDOREDUCTASE, HYPOXIA EXPDTA X-RAY DIFFRACTION AUTHOR W.D.FIGG JR,M.A.MCDONOUGH,R.CHOWDHURY,Y.NAKASHIMA,C.J.SCHOFIELD REVDAT 4 31-JAN-24 7Q5V 1 REMARK REVDAT 3 18-OCT-23 7Q5V 1 JRNL REVDAT 2 26-JUL-23 7Q5V 1 JRNL REVDAT 1 16-NOV-22 7Q5V 0 JRNL AUTH W.D.FIGG JR.,G.FIORINI,R.CHOWDHURY,Y.NAKASHIMA,A.TUMBER, JRNL AUTH 2 M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS FOR BINDING OF THE RENAL CARCINOMA TARGET JRNL TITL 2 HYPOXIA-INDUCIBLE FACTOR 2 ALPHA TO PROLYL HYDROXYLASE JRNL TITL 3 DOMAIN 2. JRNL REF PROTEINS V. 91 1510 2023 JRNL REFN ESSN 1097-0134 JRNL PMID 37449559 JRNL DOI 10.1002/PROT.26541 REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 73654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 3747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8800 - 3.5100 1.00 2850 136 0.1395 0.1610 REMARK 3 2 3.5100 - 2.7900 1.00 2716 134 0.1322 0.1588 REMARK 3 3 2.7900 - 2.4300 1.00 2649 138 0.1357 0.1593 REMARK 3 4 2.4300 - 2.2100 1.00 2641 121 0.1330 0.1436 REMARK 3 5 2.2100 - 2.0500 1.00 2619 153 0.1366 0.1535 REMARK 3 6 2.0500 - 1.9300 1.00 2610 141 0.1413 0.1626 REMARK 3 7 1.9300 - 1.8300 1.00 2593 153 0.1461 0.1514 REMARK 3 8 1.8300 - 1.7500 1.00 2601 149 0.1450 0.1911 REMARK 3 9 1.7500 - 1.6900 1.00 2569 157 0.1548 0.2121 REMARK 3 10 1.6900 - 1.6300 1.00 2605 126 0.1591 0.1869 REMARK 3 11 1.6300 - 1.5800 1.00 2579 144 0.1567 0.1874 REMARK 3 12 1.5800 - 1.5300 1.00 2561 127 0.1668 0.1808 REMARK 3 13 1.5300 - 1.4900 1.00 2630 121 0.1838 0.2075 REMARK 3 14 1.4900 - 1.4600 1.00 2595 141 0.1897 0.2097 REMARK 3 15 1.4600 - 1.4200 1.00 2512 144 0.1860 0.2133 REMARK 3 16 1.4200 - 1.3900 1.00 2584 146 0.1968 0.2040 REMARK 3 17 1.3900 - 1.3600 1.00 2574 127 0.2026 0.2079 REMARK 3 18 1.3600 - 1.3400 1.00 2548 146 0.2081 0.2324 REMARK 3 19 1.3400 - 1.3200 1.00 2585 145 0.2178 0.2474 REMARK 3 20 1.3200 - 1.2900 1.00 2534 164 0.2232 0.2482 REMARK 3 21 1.2900 - 1.2700 1.00 2550 125 0.2468 0.2379 REMARK 3 22 1.2700 - 1.2500 1.00 2556 132 0.2502 0.2686 REMARK 3 23 1.2500 - 1.2300 1.00 2556 145 0.2669 0.2439 REMARK 3 24 1.2300 - 1.2200 1.00 2563 154 0.2851 0.2973 REMARK 3 25 1.2200 - 1.2000 1.00 2550 119 0.2869 0.3068 REMARK 3 26 1.2000 - 1.1800 0.98 2542 129 0.3091 0.3188 REMARK 3 27 1.1800 - 1.1700 0.96 2435 130 0.3109 0.3070 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5525 26.7259 16.9036 REMARK 3 T TENSOR REMARK 3 T11: 0.2548 T22: 0.2824 REMARK 3 T33: 0.2212 T12: 0.1020 REMARK 3 T13: -0.0188 T23: -0.0680 REMARK 3 L TENSOR REMARK 3 L11: 6.9579 L22: 7.8020 REMARK 3 L33: 2.1313 L12: 4.2682 REMARK 3 L13: -3.5867 L23: -1.6348 REMARK 3 S TENSOR REMARK 3 S11: -0.3015 S12: -0.9101 S13: 0.2893 REMARK 3 S21: 0.9664 S22: 0.0480 S23: 0.0382 REMARK 3 S31: -0.3289 S32: 0.1731 S33: 0.3017 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8645 6.4194 13.9396 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.1177 REMARK 3 T33: 0.1064 T12: 0.0064 REMARK 3 T13: -0.0220 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.3220 L22: 2.0044 REMARK 3 L33: 1.2035 L12: -0.5893 REMARK 3 L13: 0.2150 L23: -0.3517 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: -0.1439 S13: -0.1142 REMARK 3 S21: 0.1508 S22: 0.1007 S23: -0.0355 REMARK 3 S31: 0.0707 S32: -0.0323 S33: -0.0413 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2503 11.4648 9.3590 REMARK 3 T TENSOR REMARK 3 T11: 0.0908 T22: 0.0899 REMARK 3 T33: 0.0912 T12: 0.0102 REMARK 3 T13: -0.0144 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.4290 L22: 1.1761 REMARK 3 L33: 0.7089 L12: -0.5775 REMARK 3 L13: -0.0265 L23: -0.1347 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: -0.0533 S13: 0.0240 REMARK 3 S21: 0.0540 S22: 0.0622 S23: 0.0349 REMARK 3 S31: -0.0456 S32: -0.0844 S33: -0.0047 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0562 15.5346 12.1641 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.0649 REMARK 3 T33: 0.1725 T12: -0.0066 REMARK 3 T13: -0.0318 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 3.4010 L22: 2.1372 REMARK 3 L33: 4.3044 L12: 0.6609 REMARK 3 L13: 0.1018 L23: -1.0869 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: -0.0507 S13: 0.1749 REMARK 3 S21: 0.1156 S22: 0.0057 S23: -0.2111 REMARK 3 S31: -0.2614 S32: 0.1677 S33: -0.0061 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6715 14.1101 9.0196 REMARK 3 T TENSOR REMARK 3 T11: 0.0841 T22: 0.0618 REMARK 3 T33: 0.1134 T12: -0.0152 REMARK 3 T13: -0.0175 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.3613 L22: 1.5560 REMARK 3 L33: 2.4077 L12: -0.7627 REMARK 3 L13: 0.4612 L23: -0.5982 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: -0.0600 S13: 0.1064 REMARK 3 S21: 0.0150 S22: 0.0170 S23: -0.1769 REMARK 3 S31: -0.1108 S32: 0.0799 S33: -0.0084 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 382 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2430 5.0398 1.9494 REMARK 3 T TENSOR REMARK 3 T11: 0.0855 T22: 0.0978 REMARK 3 T33: 0.0964 T12: -0.0107 REMARK 3 T13: 0.0065 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 4.5289 L22: 1.3297 REMARK 3 L33: 5.3005 L12: 1.2057 REMARK 3 L13: 3.8469 L23: 0.9493 REMARK 3 S TENSOR REMARK 3 S11: -0.0581 S12: 0.2062 S13: -0.1334 REMARK 3 S21: -0.1364 S22: 0.0851 S23: 0.0380 REMARK 3 S31: 0.0775 S32: -0.0439 S33: -0.0517 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 523 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1091 2.9201 -7.2898 REMARK 3 T TENSOR REMARK 3 T11: 0.3357 T22: 0.3481 REMARK 3 T33: 0.1951 T12: -0.0000 REMARK 3 T13: 0.0616 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 4.9275 L22: 5.1947 REMARK 3 L33: 4.8519 L12: 1.6357 REMARK 3 L13: -2.5803 L23: -4.5719 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: 1.2414 S13: -0.0130 REMARK 3 S21: -1.4283 S22: 0.1017 S23: -0.4194 REMARK 3 S31: 0.6201 S32: 0.7370 S33: 0.0446 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 530 THROUGH 542 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8310 1.7237 6.0215 REMARK 3 T TENSOR REMARK 3 T11: 0.1179 T22: 0.1491 REMARK 3 T33: 0.2184 T12: -0.0120 REMARK 3 T13: 0.0260 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 5.7594 L22: 0.9094 REMARK 3 L33: 1.0438 L12: 0.0934 REMARK 3 L13: -2.2014 L23: 0.0345 REMARK 3 S TENSOR REMARK 3 S11: -0.3339 S12: 0.1698 S13: -0.8763 REMARK 3 S21: 0.1137 S22: 0.0181 S23: 0.2580 REMARK 3 S31: 0.1621 S32: -0.2119 S33: 0.3043 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Q5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292118938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.5.769 REMARK 200 DATA SCALING SOFTWARE : DIALS 1.12.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73796 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 43.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 23.90 REMARK 200 R MERGE (I) : 0.14670 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 15.40 REMARK 200 R MERGE FOR SHELL (I) : 3.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 3HQR REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SAMPLE: 1.0 MM PHD2, 1.2 MM MNCL2, 2.0 REMARK 280 MM NOG, 2 MM 3C, 2-4 MM HIF-2ALPHA-CODD; RESERVOIR: 0.31 M REMARK 280 MAGNESIUM FORMATE (RANGE: 0.25-0.39 M), 16.6% W/V POLYETHYLENE REMARK 280 GLYCOL 3350 (RANGE: 18-22%); SITTING DROP (200 NL): PROTEIN-TO- REMARK 280 WELL RATIO, 1:1; CRYO-PROTECTANT: 15% V/V DILUTION OF RESERVOIR REMARK 280 WITH GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 65.45700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.16100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 65.45700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 19.16100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 185 OG1 CG2 REMARK 470 LYS A 216 CE NZ REMARK 470 GLU A 217 CD OE1 OE2 REMARK 470 LYS A 244 NZ REMARK 470 GLU A 260 CD OE1 OE2 REMARK 470 LYS A 337 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 682 O HOH A 785 1.83 REMARK 500 OD1 ASN A 293 O HOH A 601 1.86 REMARK 500 O HOH A 785 O HOH A 787 1.91 REMARK 500 O HOH A 791 O HOH A 803 1.94 REMARK 500 O PHE A 391 O HOH A 601 1.97 REMARK 500 O HOH A 602 O HOH B 713 2.02 REMARK 500 O HOH A 622 O HOH A 652 2.03 REMARK 500 O HOH A 630 O HOH A 748 2.06 REMARK 500 O HOH A 646 O HOH A 826 2.06 REMARK 500 O HOH A 784 O HOH A 826 2.11 REMARK 500 OD1 ASN A 293 O HOH A 602 2.13 REMARK 500 O HOH A 744 O HOH A 787 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 250 HH21 ARG A 312 3545 1.59 REMARK 500 O HOH A 826 O HOH A 833 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -59.46 -124.79 REMARK 500 LYS A 244 -81.42 -101.48 REMARK 500 PHE A 346 71.39 -112.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 510 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 244 O REMARK 620 2 ASP A 246 O 131.2 REMARK 620 3 ASP A 246 O 131.5 2.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 511 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 280 O REMARK 620 2 ILE A 280 O 1.1 REMARK 620 3 ASN A 284 OD1 85.1 84.6 REMARK 620 4 HOH A 780 O 142.2 143.3 111.9 REMARK 620 5 HOH A 780 O 154.2 155.0 91.3 22.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 93.9 REMARK 620 3 HIS A 374 NE2 85.8 90.9 REMARK 620 4 OGA A 502 O1 95.6 99.4 169.4 REMARK 620 5 OGA A 502 O2' 93.9 172.1 88.6 80.9 REMARK 620 6 HOH A 654 O 177.4 87.6 92.0 86.3 84.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 830 O REMARK 620 2 GLN B 541 O 124.4 REMARK 620 3 HOH B 721 O 81.8 110.3 REMARK 620 N 1 2 DBREF 7Q5V A 181 407 UNP Q9GZT9 EGLN1_HUMAN 181 407 DBREF 7Q5V B 523 542 UNP Q99814 EPAS1_HUMAN 523 542 SEQADV 7Q5V GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 7Q5V SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 7Q5V HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 7Q5V MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 7Q5V ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 7Q5V SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQRES 1 A 233 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 233 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 233 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 233 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 233 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 233 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 233 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 233 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 233 LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 233 ILE ASN GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 233 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 233 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 233 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 233 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 233 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 233 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 233 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 233 ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU SEQRES 1 B 20 GLU LEU ASP LEU GLU THR LEU ALA PRO TYR ILE PRO MET SEQRES 2 B 20 ASP GLY GLU ASP PHE GLN LEU HET MN A 501 1 HET OGA A 502 13 HET PEG A 503 17 HET GOL A 504 13 HET FMT A 505 4 HET FMT A 506 4 HET PEG A 507 17 HET PEG A 508 17 HET CL A 509 1 HET MG A 510 1 HET MG A 511 1 HET FMT B 601 4 HET MG B 602 1 HETNAM MN MANGANESE (II) ION HETNAM OGA N-OXALYLGLYCINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN MN 2+ FORMUL 4 OGA C4 H5 N O5 FORMUL 5 PEG 3(C4 H10 O3) FORMUL 6 GOL C3 H8 O3 FORMUL 7 FMT 3(C H2 O2) FORMUL 11 CL CL 1- FORMUL 12 MG 3(MG 2+) FORMUL 16 HOH *262(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 THR A 232 1 18 HELIX 4 AA4 SER A 247 ILE A 251 5 5 HELIX 5 AA5 CYS A 266 CYS A 283 1 18 HELIX 6 AA6 ASP A 335 GLY A 340 1 6 HELIX 7 AA7 ALA A 393 THR A 405 1 13 HELIX 8 AA8 ASP B 525 LEU B 529 5 5 SHEET 1 AA1 7 ILE A 207 VAL A 210 0 SHEET 2 AA1 7 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA1 7 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA1 7 THR A 382 ASP A 392 -1 O TYR A 390 N CYS A 323 SHEET 5 AA1 7 ALA A 298 PRO A 304 -1 N MET A 299 O THR A 387 SHEET 6 AA1 7 LYS A 255 ILE A 259 -1 N THR A 257 O VAL A 300 SHEET 7 AA1 7 THR A 236 ASP A 237 -1 N THR A 236 O ILE A 256 SHEET 1 AA2 6 ILE A 207 VAL A 210 0 SHEET 2 AA2 6 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA2 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA2 6 THR A 382 ASP A 392 -1 O TYR A 390 N CYS A 323 SHEET 5 AA2 6 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 6 AA2 6 PHE B 540 GLN B 541 -1 O PHE B 540 N ARG A 295 SHEET 1 AA3 4 THR A 308 HIS A 313 0 SHEET 2 AA3 4 HIS A 374 ALA A 379 -1 O HIS A 374 N HIS A 313 SHEET 3 AA3 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA3 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 SSBOND 1 CYS A 201 CYS A 208 1555 1555 2.05 LINK O LYS A 244 MG MG A 510 1555 1555 2.98 LINK O AASP A 246 MG MG A 510 1555 1555 2.82 LINK O BASP A 246 MG MG A 510 1555 1555 2.74 LINK O AILE A 280 MG MG A 511 1555 1555 2.82 LINK O BILE A 280 MG MG A 511 1555 1555 2.75 LINK OD1AASN A 284 MG MG A 511 1555 1555 2.21 LINK NE2 HIS A 313 MN MN A 501 1555 1555 2.19 LINK OD1 ASP A 315 MN MN A 501 1555 1555 2.14 LINK NE2 HIS A 374 MN MN A 501 1555 1555 2.17 LINK MN MN A 501 O1 OGA A 502 1555 1555 2.16 LINK MN MN A 501 O2' OGA A 502 1555 1555 2.17 LINK MN MN A 501 O HOH A 654 1555 1555 2.22 LINK MG MG A 511 O AHOH A 780 1555 1555 2.78 LINK MG MG A 511 O BHOH A 780 1555 1555 2.99 LINK O HOH A 830 MG MG B 602 2565 1555 2.91 LINK O GLN B 541 MG MG B 602 1555 1555 2.80 LINK MG MG B 602 O HOH B 721 1555 1555 2.28 CISPEP 1 LYS A 186 PRO A 187 0 2.08 CRYST1 130.914 38.322 42.880 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007639 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023321 0.00000