HEADER OXIDOREDUCTASE 05-NOV-21 7Q68 TITLE CRYSTAL STRUCTURE OF CHAETOMIUM THERMOPHILUM WILD-TYPE AHP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 3 1495; SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 GENE: CTHT_0014370; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS URMYLATION, URM1, UBIQUITIN-LIKE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.E.RAVICHANDRAN,P.WILK,P.GRUDNIK,S.GLATT REVDAT 5 13-NOV-24 7Q68 1 REMARK REVDAT 4 31-JAN-24 7Q68 1 REMARK REVDAT 3 26-OCT-22 7Q68 1 JRNL REVDAT 2 28-SEP-22 7Q68 1 JRNL REVDAT 1 31-AUG-22 7Q68 0 JRNL AUTH K.E.RAVICHANDRAN,L.KADUHR,B.SKUPIEN-RABIAN,E.SHVETSOVA, JRNL AUTH 2 M.SOKOLOWSKI,R.C.KRUTYHOLOWA,D.KWASNA,C.BRACHMANN,S.LIN, JRNL AUTH 3 S.GUZMAN PEREZ,P.WILK,M.KOSTERS,P.GRUDNIK,U.JANKOWSKA, JRNL AUTH 4 S.A.LEIDEL,R.SCHAFFRATH,S.GLATT JRNL TITL E2/E3-INDEPENDENT UBIQUITIN-LIKE PROTEIN CONJUGATION BY URM1 JRNL TITL 2 IS DIRECTLY COUPLED TO CYSTEINE PERSULFIDATION. JRNL REF EMBO J. V. 41 11318 2022 JRNL REFN ESSN 1460-2075 JRNL PMID 36102610 JRNL DOI 10.15252/EMBJ.2022111318 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 32590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9200 - 4.0000 1.00 2804 148 0.1642 0.1699 REMARK 3 2 4.0000 - 3.1800 1.00 2646 139 0.1743 0.1832 REMARK 3 3 3.1800 - 2.7800 1.00 2609 138 0.2006 0.2268 REMARK 3 4 2.7800 - 2.5200 1.00 2586 136 0.2032 0.2114 REMARK 3 5 2.5200 - 2.3400 1.00 2578 136 0.1937 0.1913 REMARK 3 6 2.3400 - 2.2000 1.00 2555 134 0.1815 0.2434 REMARK 3 7 2.2000 - 2.0900 1.00 2557 134 0.1905 0.2362 REMARK 3 8 2.0900 - 2.0000 1.00 2560 136 0.2127 0.2240 REMARK 3 9 2.0000 - 1.9200 0.99 2514 133 0.2420 0.2634 REMARK 3 10 1.9200 - 1.8600 1.00 2541 134 0.3008 0.3431 REMARK 3 11 1.8600 - 1.8000 1.00 2534 132 0.3370 0.3857 REMARK 3 12 1.8000 - 1.7500 0.98 2477 129 0.3731 0.3967 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.251 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.454 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1305 REMARK 3 ANGLE : 0.584 1777 REMARK 3 CHIRALITY : 0.048 204 REMARK 3 PLANARITY : 0.004 227 REMARK 3 DIHEDRAL : 19.617 453 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9703 70.1964 41.5231 REMARK 3 T TENSOR REMARK 3 T11: 0.3566 T22: 0.5720 REMARK 3 T33: 0.3608 T12: -0.0273 REMARK 3 T13: -0.0241 T23: 0.0629 REMARK 3 L TENSOR REMARK 3 L11: 7.5717 L22: 1.9582 REMARK 3 L33: 3.9770 L12: 1.6440 REMARK 3 L13: 5.0424 L23: 2.0953 REMARK 3 S TENSOR REMARK 3 S11: 0.0656 S12: 0.4826 S13: -0.1612 REMARK 3 S21: 0.2802 S22: 0.1132 S23: -0.3974 REMARK 3 S31: 0.0481 S32: 0.8841 S33: -0.3194 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2924 73.0971 31.4233 REMARK 3 T TENSOR REMARK 3 T11: 0.3472 T22: 0.5001 REMARK 3 T33: 0.4467 T12: -0.0309 REMARK 3 T13: 0.0044 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 4.5211 L22: 5.0195 REMARK 3 L33: 7.5809 L12: -4.7144 REMARK 3 L13: -3.5532 L23: 4.4850 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.2884 S13: -0.2520 REMARK 3 S21: -0.0533 S22: -0.2366 S23: 0.4122 REMARK 3 S31: 0.5591 S32: -0.8951 S33: 0.2336 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5929 76.3576 37.0920 REMARK 3 T TENSOR REMARK 3 T11: 0.3238 T22: 0.4608 REMARK 3 T33: 0.3299 T12: -0.0805 REMARK 3 T13: -0.0517 T23: 0.1174 REMARK 3 L TENSOR REMARK 3 L11: 8.5055 L22: 8.3796 REMARK 3 L33: 1.4142 L12: 4.6719 REMARK 3 L13: 1.6035 L23: 0.2292 REMARK 3 S TENSOR REMARK 3 S11: -0.3771 S12: 0.4089 S13: 0.2485 REMARK 3 S21: -0.3045 S22: 0.1081 S23: -0.4081 REMARK 3 S31: -1.0863 S32: 1.0518 S33: 0.2553 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6831 68.3171 52.1563 REMARK 3 T TENSOR REMARK 3 T11: 0.7677 T22: 0.8288 REMARK 3 T33: 0.5235 T12: -0.0105 REMARK 3 T13: 0.1615 T23: -0.0768 REMARK 3 L TENSOR REMARK 3 L11: 3.9180 L22: 8.7811 REMARK 3 L33: 2.9965 L12: 2.4711 REMARK 3 L13: 0.2737 L23: 4.6238 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: -2.1257 S13: 0.5463 REMARK 3 S21: 2.3323 S22: -0.6053 S23: 1.1588 REMARK 3 S31: 0.2275 S32: -0.6790 S33: 0.5709 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0069 73.2594 43.6146 REMARK 3 T TENSOR REMARK 3 T11: 0.3644 T22: 0.3747 REMARK 3 T33: 0.3226 T12: 0.0026 REMARK 3 T13: -0.0093 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 4.3748 L22: 1.9949 REMARK 3 L33: 4.3541 L12: 0.1310 REMARK 3 L13: 1.2198 L23: -0.4812 REMARK 3 S TENSOR REMARK 3 S11: -0.1727 S12: -0.1701 S13: 0.2251 REMARK 3 S21: 0.1547 S22: 0.0024 S23: -0.0541 REMARK 3 S31: -0.3628 S32: 0.1367 S33: 0.1716 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5029 75.6431 48.6196 REMARK 3 T TENSOR REMARK 3 T11: 0.3561 T22: 0.5012 REMARK 3 T33: 0.4097 T12: -0.0835 REMARK 3 T13: -0.1133 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 6.6818 L22: 3.8388 REMARK 3 L33: 6.9519 L12: 0.5397 REMARK 3 L13: 0.3507 L23: -0.6266 REMARK 3 S TENSOR REMARK 3 S11: -0.1679 S12: -0.0625 S13: 0.5501 REMARK 3 S21: 0.3763 S22: -0.0044 S23: -0.3114 REMARK 3 S31: -0.6737 S32: 0.5829 S33: 0.2587 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7650 77.5306 56.3335 REMARK 3 T TENSOR REMARK 3 T11: 0.5576 T22: 0.6536 REMARK 3 T33: 0.4313 T12: 0.0133 REMARK 3 T13: -0.1077 T23: -0.0659 REMARK 3 L TENSOR REMARK 3 L11: 9.1425 L22: 2.3946 REMARK 3 L33: 9.3336 L12: 0.9169 REMARK 3 L13: 0.5571 L23: -1.2980 REMARK 3 S TENSOR REMARK 3 S11: -0.4268 S12: -1.2820 S13: 0.3535 REMARK 3 S21: 0.1747 S22: -0.2018 S23: -0.1122 REMARK 3 S31: -0.8541 S32: 0.0633 S33: 0.6722 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Q68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32659 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 47.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.329 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.46 REMARK 200 R MERGE FOR SHELL (I) : 1.88300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DSR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE AND 0.1 M SODIUM REMARK 280 CACODYLATE -PH 6.5., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.12050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.68075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.56025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.12050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.56025 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.68075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 75.24900 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 75.24900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 82.68075 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 471 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 493 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 500 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 170 REMARK 465 LYS A 171 REMARK 465 LEU A 172 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 44 CD CE NZ REMARK 480 ARG A 76 NE CZ NH1 NH2 REMARK 480 LYS A 138 CD CE NZ REMARK 480 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H VAL A 150 O HOH A 401 1.31 REMARK 500 O HOH A 470 O HOH A 483 1.92 REMARK 500 O HOH A 401 O HOH A 423 2.08 REMARK 500 O HOH A 449 O HOH A 469 2.12 REMARK 500 N VAL A 150 O HOH A 401 2.15 REMARK 500 O HOH A 442 O HOH A 447 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 105 -157.30 -137.00 REMARK 500 REMARK 500 REMARK: NULL DBREF 7Q68 A 1 172 UNP G0S1P8 G0S1P8_CHATD 1 172 SEQRES 1 A 172 MET ALA PRO LEU GLN PRO GLY ASP SER PHE PRO ALA ASN SEQRES 2 A 172 VAL VAL PHE SER TYR ILE PRO PRO THR GLY SER LEU ASP SEQRES 3 A 172 LEU THR VAL CYS GLY ARG PRO ILE GLU TYR ASN ALA SER SEQRES 4 A 172 GLU ALA LEU ALA LYS GLY THR SER VAL LEU VAL ALA VAL SEQRES 5 A 172 PRO GLY ALA PHE THR PRO THR CYS GLN GLU LYS HIS VAL SEQRES 6 A 172 THR GLY PHE ILE ALA LYS LEU ASP GLN LEU ARG GLN ALA SEQRES 7 A 172 GLY VAL ASP ARG VAL LEU PHE ILE ALA SER ASN ASP ALA SEQRES 8 A 172 PHE VAL MET SER ALA TRP GLY LYS ALA ASN GLY ILE LYS SEQRES 9 A 172 ASP GLU SER ILE LEU PHE LEU SER ASP SER ASP THR ALA SEQRES 10 A 172 PHE SER SER SER ILE GLY TRP ALA ASN ALA GLY ARG THR SEQRES 11 A 172 GLY ARG TYR ALA ILE VAL VAL LYS ASP GLY LYS VAL VAL SEQRES 12 A 172 TYR ALA ALA VAL ASP THR VAL ARG GLY SER THR GLU LYS SEQRES 13 A 172 SER GLY VAL ASP ALA VAL LEU THR VAL LEU GLY ASN GLN SEQRES 14 A 172 GLY LYS LEU HET GOL A 301 14 HET GOL A 302 14 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 HOH *101(H2 O) HELIX 1 AA1 ALA A 38 ALA A 43 1 6 HELIX 2 AA2 LYS A 63 LYS A 71 1 9 HELIX 3 AA3 LYS A 71 ALA A 78 1 8 HELIX 4 AA4 ASP A 90 ASN A 101 1 12 HELIX 5 AA5 THR A 116 ILE A 122 1 7 HELIX 6 AA6 GLY A 158 GLY A 167 1 10 SHEET 1 AA1 2 VAL A 15 TYR A 18 0 SHEET 2 AA1 2 ILE A 34 ASN A 37 -1 O TYR A 36 N PHE A 16 SHEET 1 AA2 5 LEU A 109 SER A 112 0 SHEET 2 AA2 5 ARG A 82 ALA A 87 1 N PHE A 85 O LEU A 109 SHEET 3 AA2 5 THR A 46 ALA A 51 1 N VAL A 50 O LEU A 84 SHEET 4 AA2 5 ARG A 132 LYS A 138 -1 O ILE A 135 N LEU A 49 SHEET 5 AA2 5 LYS A 141 ASP A 148 -1 O VAL A 143 N VAL A 136 SHEET 1 AA3 2 ALA A 125 ASN A 126 0 SHEET 2 AA3 2 ARG A 129 THR A 130 -1 O ARG A 129 N ASN A 126 SSBOND 1 CYS A 30 CYS A 60 1555 8665 2.03 CRYST1 75.249 75.249 110.241 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013289 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009071 0.00000