HEADER CELL CYCLE 07-NOV-21 7Q6G TITLE XENORHABDUS POINARII FTSA 1-396 ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN FTSA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENORHABDUS POINARII G6; SOURCE 3 ORGANISM_TAXID: 1354304; SOURCE 4 GENE: FTSA, XPG1_0684; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: CD41(DE3) KEYWDS BACTERIAL CELL DIVISION, DIVISOME, ACTIN HOMOLOGUE, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR T.NIERHAUS,D.KUREISAITE-CIZIENE,J.LOWE REVDAT 5 31-JAN-24 7Q6G 1 REMARK REVDAT 4 12-OCT-22 7Q6G 1 JRNL REVDAT 3 05-OCT-22 7Q6G 1 JRNL REVDAT 2 28-SEP-22 7Q6G 1 JRNL REVDAT 1 21-SEP-22 7Q6G 0 JRNL AUTH T.NIERHAUS,S.H.MCLAUGHLIN,F.BURMANN,D.KUREISAITE-CIZIENE, JRNL AUTH 2 S.L.MASLEN,J.M.SKEHEL,C.W.H.YU,S.M.V.FREUND,L.F.H.FUNKE, JRNL AUTH 3 J.W.CHIN,J.LOWE JRNL TITL BACTERIAL DIVISOME PROTEIN FTSA FORMS CURVED ANTIPARALLEL JRNL TITL 2 DOUBLE FILAMENTS WHEN BINDING TO FTSN. JRNL REF NAT MICROBIOL V. 7 1686 2022 JRNL REFN ESSN 2058-5276 JRNL PMID 36123441 JRNL DOI 10.1038/S41564-022-01206-9 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 12241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8300 - 5.6000 0.98 2764 163 0.1716 0.1819 REMARK 3 2 5.6000 - 4.4400 0.96 2751 134 0.1702 0.1861 REMARK 3 3 4.4400 - 3.8800 0.96 2761 107 0.1915 0.2515 REMARK 3 4 3.8800 - 3.5300 0.95 2719 151 0.2404 0.2909 REMARK 3 5 3.5300 - 3.2700 0.94 2664 145 0.2621 0.3679 REMARK 3 6 3.2700 - 3.0800 0.96 2689 143 0.2682 0.3265 REMARK 3 7 3.0800 - 2.9300 0.95 2704 151 0.2729 0.3088 REMARK 3 8 2.9300 - 2.8000 0.91 2521 148 0.3141 0.3840 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Q6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12283 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.25700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.85700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7Q6D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M SODIUM SUCCINATE PH 7.0, 0.1 M BIS REMARK 280 -TRIS-PROPANE PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.13800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.35750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.13800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.35750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 GLY A 393 REMARK 465 ASP A 394 REMARK 465 SER A 395 REMARK 465 ASP A 396 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 6 -135.24 -122.17 REMARK 500 SER A 43 96.92 -66.50 REMARK 500 ASP A 47 -164.98 -75.45 REMARK 500 HIS A 87 46.85 -85.22 REMARK 500 ARG A 122 140.87 -36.74 REMARK 500 LYS A 144 -62.61 -93.59 REMARK 500 PRO A 233 35.44 -83.71 REMARK 500 ALA A 235 -141.63 -144.86 REMARK 500 HIS A 326 -27.45 -146.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 501 O2B REMARK 620 2 ADP A 501 O2A 75.1 REMARK 620 N 1 DBREF1 7Q6G A 1 396 UNP A0A068QZX9_9GAMM DBREF2 7Q6G A A0A068QZX9 13 408 SEQRES 1 A 396 MET ILE LYS SER THR ASP ARG LYS LEU VAL VAL GLY LEU SEQRES 2 A 396 GLU ILE GLY THR ALA LYS VAL SER ALA LEU VAL GLY GLU SEQRES 3 A 396 ILE LEU PRO ASP GLY MET VAL ASN ILE ILE GLY VAL GLY SEQRES 4 A 396 ASN CYS PRO SER ARG GLY MET ASP LYS GLY GLY VAL ASN SEQRES 5 A 396 ASP LEU GLU SER VAL VAL LYS CYS VAL GLN ARG ALA ILE SEQRES 6 A 396 ASP GLN ALA GLU LEU MET ALA ASP CYS GLN ILE SER SER SEQRES 7 A 396 VAL TYR LEU ALA LEU SER GLY LYS HIS ILE SER CYS GLN SEQRES 8 A 396 ASN GLU ILE GLY MET VAL PRO VAL SER GLU GLU GLU VAL SEQRES 9 A 396 THR GLN ASP ASP VAL ASP SER VAL VAL HIS THR ALA LYS SEQRES 10 A 396 SER VAL ARG VAL ARG ASP GLU HIS ARG ILE LEU HIS VAL SEQRES 11 A 396 ILE PRO GLN GLU TYR ALA ILE ASP TYR GLN GLU GLY ILE SEQRES 12 A 396 LYS ASN PRO VAL GLY LEU SER GLY VAL ARG MET GLN ALA SEQRES 13 A 396 LYS VAL HIS LEU ILE THR CYS HIS ASN ASP MET ALA LYS SEQRES 14 A 396 ASN ILE VAL LYS ALA VAL GLU ARG CYS GLY LEU LYS VAL SEQRES 15 A 396 ASP GLN LEU ILE PHE ALA GLY LEU ALA ALA SER TYR ALA SEQRES 16 A 396 VAL LEU THR GLU ASP GLU ARG GLU LEU GLY VAL CYS VAL SEQRES 17 A 396 VAL ASP ILE GLY GLY GLY THR MET ASP VAL ALA VAL TYR SEQRES 18 A 396 THR GLY GLY ALA LEU ARG HIS THR LYS VAL ILE PRO TYR SEQRES 19 A 396 ALA GLY ASN VAL VAL THR SER ASP ILE ALA TYR ALA PHE SEQRES 20 A 396 GLY THR PRO PRO SER ASP ALA GLU THR ILE LYS VAL ARG SEQRES 21 A 396 HIS GLY CYS ALA LEU GLY SER ILE VAL SER LYS ASP GLU SEQRES 22 A 396 SER VAL GLU VAL PRO SER VAL GLY GLY ARG PRO PRO ARG SEQRES 23 A 396 SER LEU GLN ARG GLN THR LEU ALA GLU VAL ILE GLU PRO SEQRES 24 A 396 ARG TYR THR GLU LEU LEU ASN LEU VAL ASN ASP GLU ILE SEQRES 25 A 396 LEU ARG LEU GLN GLU GLN LEU ARG GLN GLN GLY VAL LYS SEQRES 26 A 396 HIS HIS LEU ALA ALA GLY ILE VAL LEU THR GLY GLY GLY SEQRES 27 A 396 ALA GLN ILE ASP GLY LEU ALA GLU CYS ALA GLN ARG VAL SEQRES 28 A 396 PHE HIS THR GLN VAL ARG ILE GLY ARG PRO LEU ASN ILE SEQRES 29 A 396 THR GLY LEU THR ASP TYR VAL GLN ALA PRO CYS TYR SER SEQRES 30 A 396 THR ALA VAL GLY LEU LEU HIS TYR GLY LYS GLU SER HIS SEQRES 31 A 396 LEU GLY GLY ASP SER ASP HET ADP A 501 27 HET MG A 502 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ HELIX 1 AA1 ASP A 53 ASP A 73 1 21 HELIX 2 AA2 SER A 100 GLU A 103 5 4 HELIX 3 AA3 THR A 105 SER A 118 1 14 HELIX 4 AA4 ALA A 168 ARG A 177 1 10 HELIX 5 AA5 ALA A 188 LEU A 197 1 10 HELIX 6 AA6 THR A 198 GLY A 205 1 8 HELIX 7 AA7 ALA A 235 GLY A 248 1 14 HELIX 8 AA8 PRO A 250 GLY A 262 1 13 HELIX 9 AA9 ARG A 290 GLN A 321 1 32 HELIX 10 AB1 GLY A 336 GLN A 340 5 5 HELIX 11 AB2 GLY A 343 HIS A 353 1 11 HELIX 12 AB3 THR A 368 VAL A 371 5 4 HELIX 13 AB4 ALA A 373 CYS A 375 5 3 HELIX 14 AB5 TYR A 376 LEU A 391 1 16 SHEET 1 AA1 6 LYS A 181 PHE A 187 0 SHEET 2 AA1 6 SER A 78 LEU A 83 1 N LEU A 81 O ILE A 186 SHEET 3 AA1 6 LYS A 8 ILE A 15 1 N LEU A 13 O TYR A 80 SHEET 4 AA1 6 VAL A 20 ILE A 27 -1 O SER A 21 N GLU A 14 SHEET 5 AA1 6 VAL A 33 GLY A 39 -1 O ASN A 34 N GLU A 26 SHEET 6 AA1 6 ILE A 364 GLY A 366 1 O THR A 365 N ILE A 35 SHEET 1 AA2 3 ILE A 88 PRO A 98 0 SHEET 2 AA2 3 ARG A 153 HIS A 164 -1 O LEU A 160 N GLN A 91 SHEET 3 AA2 3 HIS A 125 ILE A 137 -1 N GLN A 133 O LYS A 157 SHEET 1 AA3 5 ALA A 225 ILE A 232 0 SHEET 2 AA3 5 MET A 216 THR A 222 -1 N VAL A 220 O ARG A 227 SHEET 3 AA3 5 VAL A 206 ILE A 211 -1 N ASP A 210 O ASP A 217 SHEET 4 AA3 5 GLY A 331 THR A 335 1 O THR A 335 N ILE A 211 SHEET 5 AA3 5 VAL A 356 ILE A 358 1 O ARG A 357 N LEU A 334 SHEET 1 AA4 2 SER A 274 VAL A 277 0 SHEET 2 AA4 2 ARG A 286 GLN A 289 -1 O ARG A 286 N VAL A 277 LINK O2B ADP A 501 MG MG A 502 1555 1555 2.43 LINK O2A ADP A 501 MG MG A 502 1555 1555 2.13 CRYST1 142.276 70.715 50.719 90.00 100.98 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007029 0.000000 0.001364 0.00000 SCALE2 0.000000 0.014141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020084 0.00000